Rw1G011450

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000597
Physical Location & Seq
Forward (+)
25739856 .. 25743606
3751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G011450.1

Sequence Viewer

Length: 975 bp
ATGGGAACTGTTGCTGCTCCATACATGATGGAATTAGCATCTGAGGGTGATCAGAAGCAAAATGGTGCCGAGGCGCCCGGCGGCCCTCCGAAAGAGCTTGACGCCGGAGCTCTCTTCGTTCTCAAATCGCAAGGGTCGTGGTTACACGTTGGGTACCACTTGACGACATCTATAGTGGCTCCGGTGCTTCTAAGTCTTCCGTTTGCGATGGCCTTGCTCGGCTGGGTTGGGGGAGTCATTTGTGTAGCCTTGGCAGGTTTGGTCACCTTCTACTCCTACAATCTTCTCTCTTTAGTTCTTGAGCACCAAGAAAAGCTTGGGCATCGTCAACTTCGCTTTCGAGACATGGCCAAAGACATTTTAGGTCCTGCATGGGGCAAATATTTTGTCGGTCCTCTGCAATTTGGGATATGCTATGGTGCAGTCATCGCTTGCACATTACTTGGAGGGCAGAGCCTTAAGTTTATTTACTTGCTCTCTAATCCAGATGGAACAATGAAGCTGTACCAGTTTATTATTATGTTCGGAGGCGTCACACTCTTTTTGGCTCAAATGCCATCCTTCCACTCCTTAAGGCATATTAACCTCGTTTCTCTAATCCTTTGTCTTGCATATAGCGCCTGCGTCACTGCTGGCTGCATATACGTTGGGCATACGAACAATGCTCCTGTAAAGGACTATTCCATAAAAGGAAGTACAAAAGATCGGTATTTTGGTATCTTTAATGGCATCTCAATCATCGCTACCACATACGCAAGTGGAATAATTCCCGAGATACAGGCAACTTTGGCACCTCCAATAAAAGGCAAGATGTTCAAAGGGCTATGTGTGTGCTATAGTGTGATAGTGACAACCTATTTCAGTGTCGCAATGTCTGGGTATTGGGCGTTTGGCAACCAAGCTATGGGAACAGTTCTTTCCAATTTATGGGTGTTGATGGGAAGCTTTTACTCCCTACCTGGTTTTTGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

324

Amino Acids

34.95

Weight (kDa)

8.64

Isoelectric Point (pI)

30.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 44 - 309 9.1e-46 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 245
Acc65I GGTACC 1 cut(s) 153
AccB1I GGYRCC 4 cut(s) 65, 73, 153, 790
AccB7I CCANNNNNTGG 2 cut(s) 904, 927
AciI CCGC 1 cut(s) 81
AcoI YGGCCR 1 cut(s) 348
AcyI GRCGYC 3 cut(s) 74, 102, 531
AfaI GTAC 3 cut(s) 155, 506, 697
AfiI CCNNNNNNNGG 4 cut(s) 374, 803, 904, 927
AflII CTTAAG 2 cut(s) 458, 571
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 1 cut(s) 817
AjnI CCWGG 1 cut(s) 958
AluBI AGCT 6 cut(s) 97, 110, 316, 502, 902, 945
AluI AGCT 6 cut(s) 97, 110, 316, 502, 902, 945
Alw21I GWGCWC 2 cut(s) 112, 306
Alw26I GTCTC 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 770
AoxI GGCC 3 cut(s) 82, 210, 348
ApeKI GCWGC 2 cut(s) 14, 636
ArsI GACNNNNNNTTYG 2 cut(s) 372, 404
Asp718I GGTACC 1 cut(s) 153
AspLEI GCGC 2 cut(s) 76, 620
AspS9I GGNCC 3 cut(s) 83, 365, 392
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 59, 256
AvaI CYCGRG 1 cut(s) 770
AvaII GGWCC 2 cut(s) 365, 392
BalI TGGCCA 1 cut(s) 350
BanI GGYRCC 4 cut(s) 65, 73, 153, 790
BanII GRGCYC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 2 cut(s) 112, 306
BbvI GCAGC 1 cut(s) 623
BccI CCATC 5 cut(s) 22, 202, 482, 565, 931
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 1 cut(s) 960
BclI TGATCA 1 cut(s) 49
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 336
BfmI CTRYAG 2 cut(s) 171, 835
BfoI RGCGCY 2 cut(s) 77, 621
BfrI CTTAAG 2 cut(s) 458, 571
BfuAI ACCTGC 1 cut(s) 245
BisI GCNGC 3 cut(s) 15, 82, 637
BlsI GCNGC 3 cut(s) 16, 83, 638
Bme1390I CCNGG 2 cut(s) 78, 960
Bme18I GGWCC 2 cut(s) 365, 392
BmeT110I CYCGRG 1 cut(s) 770
BmgT120I GGNCC 3 cut(s) 83, 365, 392
BmiI GGNNCC 5 cut(s) 67, 75, 155, 180, 792
BmrFI CCNGG 2 cut(s) 78, 960
BmsI GCATC 3 cut(s) 47, 331, 738
BpiI GAAGAC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 78
BsaHI GRCGYC 3 cut(s) 74, 102, 531
BsaJI CCNNGG 2 cut(s) 69, 249
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 4 cut(s) 374, 803, 904, 927
Bse1I ACTGG 1 cut(s) 508
Bse3DI GCAATG 1 cut(s) 876
BseBI CCWGG 1 cut(s) 960
BseDI CCNNGG 2 cut(s) 69, 249
BseGI GGATG 1 cut(s) 557
BseLI CCNNNNNNNGG 4 cut(s) 374, 803, 904, 927
BseMI GCAATG 1 cut(s) 876
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 508
BseXI GCAGC 1 cut(s) 623
BseYI CCCAGC 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 3 cut(s) 84, 212, 350
BshNI GGYRCC 4 cut(s) 65, 73, 153, 790
BsiHKAI GWGCWC 2 cut(s) 112, 306
BsiHKCI CYCGRG 1 cut(s) 770
BsiSI CCGG 3 cut(s) 78, 105, 182
BslI CCNNNNNNNGG 4 cut(s) 374, 803, 904, 927
BsmAI GTCTC 1 cut(s) 336
BsnI GGCC 3 cut(s) 84, 212, 350
BsoBI CYCGRG 1 cut(s) 770
Bsp1286I GDGCHC 2 cut(s) 112, 306
Bsp143I GATC 2 cut(s) 49, 703
BspACI CCGC 1 cut(s) 81
BspANI GGCC 3 cut(s) 84, 212, 350
BspCNI CTCAG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 971
BspLI GGNNCC 5 cut(s) 67, 75, 155, 180, 792
BspMI ACCTGC 1 cut(s) 245
BspT107I GGYRCC 4 cut(s) 65, 73, 153, 790
BspTI CTTAAG 2 cut(s) 458, 571
BsrDI GCAATG 1 cut(s) 876
BsrI ACTGG 1 cut(s) 508
BssECI CCNNGG 2 cut(s) 69, 249
BssMI GATC 2 cut(s) 49, 703
BssNI GRCGYC 3 cut(s) 74, 102, 531
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 960
Bst4CI ACNGT 2 cut(s) 10, 913
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 3 cut(s) 74, 102, 531
BstAFI CTTAAG 2 cut(s) 458, 571
BstC8I GCNNGC 3 cut(s) 433, 622, 634
BstDEI CTNAG 2 cut(s) 42, 191
BstEII GGTNACC 1 cut(s) 262
BstF5I GGATG 1 cut(s) 557
BstH2I RGCGCY 2 cut(s) 77, 621
BstHHI GCGC 2 cut(s) 76, 620
BstKTI GATC 2 cut(s) 52, 706
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 2 cut(s) 49, 703
BstMWI GCNNNNNNNGC 3 cut(s) 428, 617, 788
BstNI CCWGG 1 cut(s) 960
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 2 cut(s) 76, 958
BstSFI CTRYAG 2 cut(s) 171, 835
BstV1I GCAGC 1 cut(s) 623
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 3 cut(s) 84, 212, 350
BtgZI GCGATG 3 cut(s) 221, 412, 724
BtsCI GGATG 1 cut(s) 557
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 2 cut(s) 627, 868
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 3 cut(s) 433, 622, 634
CciI TCATGA 1 cut(s) 971
CfoI GCGC 2 cut(s) 76, 620
Cfr13I GGNCC 3 cut(s) 83, 365, 392
CseI GACGC 3 cut(s) 110, 520, 613
CsiI ACCWGGT 1 cut(s) 958
Csp6I GTAC 3 cut(s) 154, 505, 696
CspCI CAANNNNNGTGG 2 cut(s) 119, 154
CviAII CATG 4 cut(s) 25, 346, 372, 972
CviQI GTAC 3 cut(s) 154, 505, 696
DdeI CTNAG 2 cut(s) 42, 191
DinI GGCGCC 1 cut(s) 75
DpnI GATC 2 cut(s) 51, 705
DpnII GATC 2 cut(s) 49, 703
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 365, 392
Eco53kI GAGCTC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 770
Eco91I GGTNACC 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 365
EcoO65I GGTNACC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 958
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 112
EgeI GGCGCC 1 cut(s) 75
EheI GGCGCC 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 4 cut(s) 28, 349, 375, 975
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 4 cut(s) 24, 345, 371, 971
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 15, 82, 637
FokI GGATG 1 cut(s) 544
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 15, 82, 637
GlaI GCGC 2 cut(s) 75, 619
GluI GCNGC 3 cut(s) 15, 82, 637
GsaI CCCAGC 1 cut(s) 226
HaeII RGCGCY 2 cut(s) 77, 621
HaeIII GGCC 3 cut(s) 84, 212, 350
HapII CCGG 3 cut(s) 78, 105, 182
HgaI GACGC 3 cut(s) 110, 520, 613
HhaI GCGC 2 cut(s) 76, 620
Hin1I GRCGYC 3 cut(s) 74, 102, 531
Hin1II CATG 4 cut(s) 28, 349, 375, 975
Hin6I GCGC 2 cut(s) 74, 618
HinP1I GCGC 2 cut(s) 74, 618
HincII GTYRAC 1 cut(s) 329
HindII GTYRAC 1 cut(s) 329
HindIII AAGCTT 2 cut(s) 314, 943
HinfI GANTC 1 cut(s) 234
HpaII CCGG 3 cut(s) 78, 105, 182
HphI GGTGA 2 cut(s) 59, 256
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 4 cut(s) 43, 54, 90, 527
Hpy188III TCNNGA 5 cut(s) 299, 341, 485, 770, 972
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 277, 571
HpyCH4III ACNGT 2 cut(s) 10, 913
HpyCH4IV ACGT 2 cut(s) 147, 645
HpyCH4V TGCA 6 cut(s) 371, 400, 422, 435, 611, 639
HpyF10VI GCNNNNNNNGC 3 cut(s) 428, 617, 788
HpyF3I CTNAG 2 cut(s) 42, 191
HpySE526I ACGT 2 cut(s) 147, 645
Hsp92I GRCGYC 3 cut(s) 74, 102, 531
Hsp92II CATG 4 cut(s) 28, 349, 375, 975
HspAI GCGC 2 cut(s) 74, 618
KasI GGCGCC 1 cut(s) 73
KpnI GGTACC 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 2 cut(s) 49, 703
LmnI GCTCC 4 cut(s) 22, 107, 184, 670
Lsp1109I GCAGC 1 cut(s) 623
LweI GCATC 3 cut(s) 47, 331, 738
MabI ACCWGGT 1 cut(s) 958
MaeII ACGT 2 cut(s) 147, 645
MaeIII GTNAC 5 cut(s) 141, 262, 532, 625, 847
MalI GATC 2 cut(s) 51, 705
MboI GATC 2 cut(s) 49, 703
MboII GAAGA 3 cut(s) 106, 188, 275
MhlI GDGCHC 2 cut(s) 112, 306
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 4 cut(s) 32, 401, 765, 922
MluNI TGGCCA 1 cut(s) 350
Mly113I GGCGCC 1 cut(s) 74
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 8 cut(s) 37, 64, 96, 405, 440, 521, 596, 804
Mox20I TGGCCA 1 cut(s) 350
MscI TGGCCA 1 cut(s) 350
MseI TTAA 4 cut(s) 459, 572, 582, 723
Msp20I TGGCCA 1 cut(s) 350
MspCI CTTAAG 2 cut(s) 458, 571
MspI CCGG 3 cut(s) 78, 105, 182
MspR9I CCNGG 2 cut(s) 78, 960
MvaI CCWGG 1 cut(s) 960
MwoI GCNNNNNNNGC 3 cut(s) 428, 617, 788
NarI GGCGCC 1 cut(s) 74
NciI CCSGG 1 cut(s) 78
NdeII GATC 2 cut(s) 49, 703
NlaIII CATG 4 cut(s) 28, 349, 375, 975
NlaIV GGNNCC 5 cut(s) 67, 75, 155, 180, 792
NmeAIII GCCGAG 2 cut(s) 94, 198
NmuCI GTSAC 4 cut(s) 262, 532, 625, 847
PagI TCATGA 1 cut(s) 971
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PflMI CCANNNNNTGG 2 cut(s) 904, 927
PkrI GCNGC 3 cut(s) 16, 83, 638
PleI GAGTC 1 cut(s) 242
PluTI GGCGCC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 365
Psp124BI GAGCTC 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 958
PspEI GGTNACC 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 1 cut(s) 958
PspN4I GGNNCC 5 cut(s) 67, 75, 155, 180, 792
PspPI GGNCC 3 cut(s) 83, 365, 392
PspPPI RGGWCCY 1 cut(s) 365
RsaI GTAC 3 cut(s) 155, 506, 697
RsaNI GTAC 3 cut(s) 154, 505, 696
SacI GAGCTC 1 cut(s) 112
SaqAI TTAA 4 cut(s) 459, 572, 582, 723
SatI GCNGC 3 cut(s) 15, 82, 637
Sau3AI GATC 2 cut(s) 49, 703
Sau96I GGNCC 3 cut(s) 83, 365, 392
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 2 cut(s) 78, 960
SduI GDGCHC 2 cut(s) 112, 306
SexAI ACCWGGT 1 cut(s) 958
SfaNI GCATC 3 cut(s) 47, 331, 738
SfcI CTRYAG 2 cut(s) 171, 835
SfoI GGCGCC 1 cut(s) 75
SinI GGWCC 2 cut(s) 365, 392
SmlI CTYRAG 3 cut(s) 299, 458, 571
SmoI CTYRAG 3 cut(s) 299, 458, 571
Sse9I AATT 4 cut(s) 32, 401, 765, 922
SsiI CCGC 1 cut(s) 81
SspDI GGCGCC 1 cut(s) 73
SspI AATATT 1 cut(s) 383
SstI GAGCTC 1 cut(s) 112
StyD4I CCNGG 2 cut(s) 76, 958
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 10, 913
TaiI ACGT 2 cut(s) 150, 648
TaqI TCGA 1 cut(s) 340
TaqII GACCGA 1 cut(s) 380
TasI AATT 4 cut(s) 32, 401, 765, 922
TatI WGTACW 1 cut(s) 695
TauI GCSGC 1 cut(s) 84
Tru1I TTAA 4 cut(s) 459, 572, 582, 723
Tru9I TTAA 4 cut(s) 459, 572, 582, 723
TscAI CASTG 2 cut(s) 634, 868
TseFI GTSAC 4 cut(s) 262, 532, 625, 847
TseI GCWGC 2 cut(s) 14, 636
Tsp45I GTSAC 4 cut(s) 262, 532, 625, 847
TspDTI ATGAA 1 cut(s) 512
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 2 cut(s) 634, 868
Van91I CCANNNNNTGG 2 cut(s) 904, 927
Vha464I CTTAAG 2 cut(s) 458, 571
VpaK11BI GGWCC 2 cut(s) 365, 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.