Rw0G003740

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00139
OG0000597
Physical Location & Seq
Reverse (-)
13545 .. 15580
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003740.1

Sequence Viewer

Length: 1338 bp
ATGGAGCCAGTAGTAGTGGCAACAGAGGAAGATGAAGCCAACATTCCAAAGAAACTTGATGCTGGAGCTCTATTTGTGCTCAAATCCAGAGGGTCATGGTTTCACTGTGGATATCACTTGACAACTTCAATTGTAGCTCCTGCACTCTTGAGTCTTCCCTATGCACTTTCCCTGATGGGTTGGTTTGCCGGCGTTATATGCCTGACTGTTGCAGCTCTGGTAACTTTCTATTCCTACAACCTTCTGTCCTTGGTTTTAGAGCACCATGCTCACCTTGGTCAGCGCCAGCTTCGCTTCCGCGACATGGCCAGGGATATTTTGGGACCAAGTTGGGGAAGATATTTTGTAGGTCCAATTCAATTTGGCCTATGCTATGGTGCAGTTATAGCTTGCATTCTTTTAGGAGGACAGAGCCTTAAGTACATATTTCTGCTCTCTAGTTCAAGGCCGGAGACCATGAAACTCTACCAATTTGTTATTATATTTGGTGTCCTAATGCTAGTGTTGGCACAAGTTCCATCTTTCCACTCCTTAAGGCATCTCAACCTTGTCTCTCTGGTCCTTTCTCTTGCCTATAGCGCCTGTGCCACAGCCGGCTCCATATACATTGGAAATTCCATGAATGCTTCCAGGAAGGACTATTCCTTAAATGGAAGCAAACAGAATCGCATTTTTGGATTCTTCAATGCTATTTCAATCATTGCTACCACGTACGGAAATGGCATTATTCCTGAAATACAGGCTACTATAGCACCGCCAGTCAAAGGAAAAATGTTCAAGGGATTATGTATATGTTATGCTGTTGTACTTTCAACATTTTTCAGTGTTGCTATATCGGGATATTGGGCATTTGGTAATCAGGCCAAAGGTACAATTTTACTCAACTTTCTAGTTGATGAGAAGCCTCTGTTGCCGACTTGGGTTCTCTTGATGACTAATGTCTTCACCTTCTTGCAAGTAGCAGCTGTTAGTGTGGTTTACTTACAACCAACAAATGAAGTGCTCGAACGCAAGTTTGTCAACGCCAAGATTGATCAGTTCTCTGTTCGAAATGTAGTGCCAAGGTTGGTTTGCCAATCATTGTCTGTCGTGATAGCCACGACAGTTGCAGCTATGTTTCCTTTCTTTGGAGACATCAATGCTTTAATCGGAGCATTTGGTTGCATTCCTCTCGACTTCATTTTGCCAATGGTGTTCTACAATGTTGTATTCAAGCCATCCAAGTACAGCCTTCTTTTCTGGGGAAACACAATAATTGCTTCAACCTTAGGGCTTAATAATAATAATAATAATTTCCTTTATTCCAACCAAAAAAAAAAAAAGTACTCCGCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

445

Amino Acids

49.09

Weight (kDa)

9.33

Isoelectric Point (pI)

26.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 30 - 414 5.5e-68 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1331
AccII CGCG 1 cut(s) 300
AciI CCGC 3 cut(s) 298, 755, 1329
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 613
AfaI GTAC 6 cut(s) 422, 713, 807, 871, 1226, 1325
AfiI CCNNNNNNNGG 4 cut(s) 304, 332, 764, 1127
AflII CTTAAG 2 cut(s) 416, 532
AgsI TTSAA 9 cut(s) 129, 359, 444, 685, 696, 778, 813, 1213, 1263
AjnI CCWGG 2 cut(s) 308, 629
AluBI AGCT 7 cut(s) 68, 137, 215, 289, 389, 965, 1112
AluI AGCT 7 cut(s) 68, 137, 215, 289, 389, 965, 1112
Alw21I GWGCWC 4 cut(s) 70, 81, 264, 1005
Alw26I GTCTC 3 cut(s) 446, 556, 1125
AoxI GGCC 4 cut(s) 306, 364, 446, 861
ApeKI GCWGC 3 cut(s) 212, 962, 1109
ApoI RAATTY 1 cut(s) 613
AspLEI GCGC 2 cut(s) 285, 581
AspS9I GGNCC 3 cut(s) 323, 350, 559
AsuHPI GGTGA 2 cut(s) 263, 937
AsuII TTCGAA 1 cut(s) 1048
AvaII GGWCC 3 cut(s) 323, 350, 559
AxyI CCTNAGG 1 cut(s) 1267
BalI TGGCCA 1 cut(s) 308
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 2 cut(s) 146, 934
Bbv12I GWGCWC 4 cut(s) 70, 81, 264, 1005
BbvI GCAGC 3 cut(s) 224, 974, 1121
BccI CCATC 3 cut(s) 169, 526, 1225
BcgI CGANNNNNNTGC 2 cut(s) 1153, 1187
BciT130I CCWGG 2 cut(s) 310, 631
BclI TGATCA 1 cut(s) 1033
BcoDI GTCTC 3 cut(s) 446, 556, 1125
BfaI CTAG 3 cut(s) 438, 500, 890
BfmI CTRYAG 2 cut(s) 574, 747
BfoI RGCGCY 2 cut(s) 286, 582
BfrI CTTAAG 2 cut(s) 416, 532
BisI GCNGC 3 cut(s) 213, 963, 1110
BlsI GCNGC 3 cut(s) 214, 964, 1111
BmcAI AGTACT 1 cut(s) 1325
Bme1390I CCNGG 2 cut(s) 310, 631
Bme18I GGWCC 3 cut(s) 323, 350, 559
BmgT120I GGNCC 3 cut(s) 323, 350, 559
BmiI GGNNCC 3 cut(s) 6, 324, 598
BmrFI CCNGG 2 cut(s) 310, 631
BmsI GCATC 2 cut(s) 49, 547
BoxI GACNNNNGTC 1 cut(s) 938
BpiI GAAGAC 2 cut(s) 146, 934
BpmI CTGGAG 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 1048
BpuEI CTTGAG 1 cut(s) 169
BsaAI YACGTR 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 4 cut(s) 249, 274, 309, 1061
Bsc4I CCNNNNNNNGG 4 cut(s) 304, 332, 764, 1127
Bse118I RCCGGY 2 cut(s) 188, 593
Bse1I ACTGG 2 cut(s) 8, 758
Bse21I CCTNAGG 1 cut(s) 1267
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 2 cut(s) 310, 631
BseDI CCNNGG 4 cut(s) 249, 274, 309, 1061
BseGI GGATG 1 cut(s) 1217
BseLI CCNNNNNNNGG 4 cut(s) 304, 332, 764, 1127
BseMI GCAATG 1 cut(s) 699
BseNI ACTGG 2 cut(s) 8, 758
BseXI GCAGC 3 cut(s) 224, 974, 1121
BsgI GTGCAG 2 cut(s) 126, 399
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 4 cut(s) 308, 366, 448, 863
BsiHKAI GWGCWC 4 cut(s) 70, 81, 264, 1005
BsiSI CCGG 3 cut(s) 189, 449, 594
BsiWI CGTACG 1 cut(s) 711
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 4 cut(s) 304, 332, 764, 1127
BsmAI GTCTC 3 cut(s) 446, 556, 1125
BsmFI GGGAC 1 cut(s) 336
BsmI GAATGC 3 cut(s) 393, 628, 1164
BsnI GGCC 4 cut(s) 308, 366, 448, 863
Bso31I GGTCTC 1 cut(s) 446
Bsp119I TTCGAA 1 cut(s) 1048
Bsp1286I GDGCHC 4 cut(s) 70, 81, 264, 1005
Bsp143I GATC 1 cut(s) 1033
BspACI CCGC 3 cut(s) 298, 755, 1329
BspANI GGCC 4 cut(s) 308, 366, 448, 863
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 3 cut(s) 6, 324, 598
BspT104I TTCGAA 1 cut(s) 1048
BspTI CTTAAG 2 cut(s) 416, 532
BspTNI GGTCTC 1 cut(s) 446
BsrBI CCGCTC 1 cut(s) 1331
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 2 cut(s) 188, 593
BsrI ACTGG 2 cut(s) 8, 758
BssAI RCCGGY 2 cut(s) 188, 593
BssECI CCNNGG 4 cut(s) 249, 274, 309, 1061
BssMI GATC 1 cut(s) 1033
BssT1I CCWWGG 3 cut(s) 249, 274, 1061
Bst2UI CCWGG 2 cut(s) 310, 631
Bst4CI ACNGT 3 cut(s) 107, 208, 1105
BstAFI CTTAAG 2 cut(s) 416, 532
BstBAI YACGTR 1 cut(s) 711
BstBI TTCGAA 1 cut(s) 1048
BstC8I GCNNGC 4 cut(s) 190, 287, 391, 595
BstDEI CTNAG 1 cut(s) 1267
BstF5I GGATG 1 cut(s) 1217
BstFNI CGCG 1 cut(s) 300
BstH2I RGCGCY 2 cut(s) 286, 582
BstHHI GCGC 2 cut(s) 285, 581
BstKTI GATC 1 cut(s) 1036
BstMAI GTCTC 3 cut(s) 446, 556, 1125
BstMBI GATC 1 cut(s) 1033
BstMWI GCNNNNNNNGC 6 cut(s) 198, 291, 386, 578, 749, 910
BstNI CCWGG 2 cut(s) 310, 631
BstPAI GACNNNNGTC 1 cut(s) 938
BstSCI CCNGG 2 cut(s) 308, 629
BstSFI CTRYAG 2 cut(s) 574, 747
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 3 cut(s) 224, 974, 1121
BstV2I GAAGAC 2 cut(s) 146, 934
Bsu36I CCTNAGG 1 cut(s) 1267
BsuRI GGCC 4 cut(s) 308, 366, 448, 863
BtsCI GGATG 1 cut(s) 1217
BtsIMutI CAGTG 2 cut(s) 103, 829
Cac8I GCNNGC 4 cut(s) 190, 287, 391, 595
CfoI GCGC 2 cut(s) 285, 581
Cfr10I RCCGGY 2 cut(s) 188, 593
Cfr13I GGNCC 3 cut(s) 323, 350, 559
Csp6I GTAC 6 cut(s) 421, 712, 806, 870, 1225, 1324
CspCI CAANNNNNGTGG 2 cut(s) 1087, 1122
CviAII CATG 5 cut(s) 96, 266, 304, 457, 619
CviQI GTAC 6 cut(s) 421, 712, 806, 870, 1225, 1324
DdeI CTNAG 1 cut(s) 1267
DpnI GATC 1 cut(s) 1035
DpnII GATC 1 cut(s) 1033
EaeI YGGCCR 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 3 cut(s) 249, 274, 1061
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 446
Eco32I GATATC 1 cut(s) 113
Eco47I GGWCC 3 cut(s) 323, 350, 559
Eco53kI GAGCTC 1 cut(s) 68
Eco81I CCTNAGG 1 cut(s) 1267
EcoICRI GAGCTC 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 308, 629
EcoRV GATATC 1 cut(s) 113
EcoT14I CCWWGG 3 cut(s) 249, 274, 1061
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 3 cut(s) 249, 274, 1061
FaeI CATG 5 cut(s) 99, 269, 307, 460, 622
FaqI GGGAC 1 cut(s) 336
FatI CATG 5 cut(s) 95, 265, 303, 456, 618
FbaI TGATCA 1 cut(s) 1033
Fnu4HI GCNGC 3 cut(s) 213, 963, 1110
FokI GGATG 1 cut(s) 1204
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 3 cut(s) 213, 963, 1110
FspBI CTAG 3 cut(s) 438, 500, 890
GlaI GCGC 2 cut(s) 284, 580
GluI GCNGC 3 cut(s) 213, 963, 1110
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 2 cut(s) 286, 582
HaeIII GGCC 4 cut(s) 308, 366, 448, 863
HapII CCGG 3 cut(s) 189, 449, 594
HhaI GCGC 2 cut(s) 285, 581
Hin1II CATG 5 cut(s) 99, 269, 307, 460, 622
Hin6I GCGC 2 cut(s) 283, 579
HinP1I GCGC 2 cut(s) 283, 579
HincII GTYRAC 1 cut(s) 1021
HindII GTYRAC 1 cut(s) 1021
HinfI GANTC 3 cut(s) 151, 664, 678
HpaII CCGG 3 cut(s) 189, 449, 594
HphI GGTGA 2 cut(s) 263, 937
Hpy166II GTNNAC 2 cut(s) 979, 1021
Hpy188I TCNGA 1 cut(s) 1151
Hpy188III TCNNGA 7 cut(s) 87, 148, 731, 837, 928, 1090, 1172
Hpy8I GTNNAC 2 cut(s) 979, 1021
HpyAV CCTTC 4 cut(s) 251, 628, 958, 1241
HpyCH4III ACNGT 3 cut(s) 107, 208, 1105
HpyCH4IV ACGT 1 cut(s) 710
HpyCH4V TGCA 8 cut(s) 143, 164, 212, 380, 393, 955, 1109, 1164
HpyF10VI GCNNNNNNNGC 6 cut(s) 198, 291, 386, 578, 749, 910
HpyF3I CTNAG 1 cut(s) 1267
HpySE526I ACGT 1 cut(s) 710
Hsp92II CATG 5 cut(s) 99, 269, 307, 460, 622
HspAI GCGC 2 cut(s) 283, 579
KroI GCCGGC 2 cut(s) 188, 593
KroNI GCCGGC 2 cut(s) 190, 595
Ksp22I TGATCA 1 cut(s) 1033
Kzo9I GATC 1 cut(s) 1033
LmnI GCTCC 5 cut(s) 4, 65, 142, 602, 1151
Lsp1109I GCAGC 3 cut(s) 224, 974, 1121
LweI GCATC 2 cut(s) 49, 547
MaeI CTAG 3 cut(s) 438, 500, 890
MaeII ACGT 1 cut(s) 710
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 1035
MbiI CCGCTC 1 cut(s) 1331
MboI GATC 1 cut(s) 1033
MboII GAAGA 5 cut(s) 41, 146, 348, 673, 934
MfeI CAATTG 1 cut(s) 129
MhlI GDGCHC 4 cut(s) 70, 81, 264, 1005
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 8 cut(s) 129, 354, 359, 470, 613, 873, 1254, 1291
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 1329
MnlI CCTC 5 cut(s) 19, 83, 398, 915, 1179
Mox20I TGGCCA 1 cut(s) 308
MroNI GCCGGC 2 cut(s) 188, 593
MscI TGGCCA 1 cut(s) 308
MseI TTAA 5 cut(s) 417, 533, 647, 1145, 1275
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 965
MspCI CTTAAG 2 cut(s) 416, 532
MspI CCGG 3 cut(s) 189, 449, 594
MspR9I CCNGG 2 cut(s) 310, 631
MunI CAATTG 1 cut(s) 129
Mva1269I GAATGC 3 cut(s) 393, 628, 1164
MvaI CCWGG 2 cut(s) 310, 631
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 6 cut(s) 198, 291, 386, 578, 749, 910
NaeI GCCGGC 2 cut(s) 190, 595
NdeII GATC 1 cut(s) 1033
NgoMIV GCCGGC 2 cut(s) 188, 593
NlaIII CATG 5 cut(s) 99, 269, 307, 460, 622
NlaIV GGNNCC 3 cut(s) 6, 324, 598
NspV TTCGAA 1 cut(s) 1048
PctI GAATGC 3 cut(s) 393, 628, 1164
PdiI GCCGGC 2 cut(s) 190, 595
PfeI GAWTC 2 cut(s) 664, 678
Pfl23II CGTACG 1 cut(s) 711
PfoI TCCNGGA 1 cut(s) 629
PkrI GCNGC 3 cut(s) 214, 964, 1111
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Ppu21I YACGTR 1 cut(s) 711
PshAI GACNNNNGTC 1 cut(s) 938
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 308, 629
PspGI CCWGG 2 cut(s) 308, 629
PspLI CGTACG 1 cut(s) 711
PspN4I GGNNCC 3 cut(s) 6, 324, 598
PspPI GGNCC 3 cut(s) 323, 350, 559
PvuII CAGCTG 1 cut(s) 965
RsaI GTAC 6 cut(s) 422, 713, 807, 871, 1226, 1325
RsaNI GTAC 6 cut(s) 421, 712, 806, 870, 1225, 1324
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 5 cut(s) 417, 533, 647, 1145, 1275
SatI GCNGC 3 cut(s) 213, 963, 1110
Sau3AI GATC 1 cut(s) 1033
Sau96I GGNCC 3 cut(s) 323, 350, 559
ScaI AGTACT 1 cut(s) 1325
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 2 cut(s) 310, 631
SduI GDGCHC 4 cut(s) 70, 81, 264, 1005
SfaNI GCATC 2 cut(s) 49, 547
SfcI CTRYAG 2 cut(s) 574, 747
SfuI TTCGAA 1 cut(s) 1048
SinI GGWCC 3 cut(s) 323, 350, 559
SmlI CTYRAG 3 cut(s) 148, 416, 532
SmoI CTYRAG 3 cut(s) 148, 416, 532
Sse9I AATT 8 cut(s) 129, 354, 359, 470, 613, 873, 1254, 1291
SsiI CCGC 3 cut(s) 298, 755, 1329
SspMI CTAG 3 cut(s) 438, 500, 890
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 2 cut(s) 308, 629
StyI CCWWGG 3 cut(s) 249, 274, 1061
TaaI ACNGT 3 cut(s) 107, 208, 1105
TaiI ACGT 1 cut(s) 713
TaqI TCGA 3 cut(s) 1005, 1048, 1173
TasI AATT 8 cut(s) 129, 354, 359, 470, 613, 873, 1254, 1291
TatI WGTACW 4 cut(s) 420, 805, 1224, 1323
TfiI GAWTC 2 cut(s) 664, 678
Tru1I TTAA 5 cut(s) 417, 533, 647, 1145, 1275
Tru9I TTAA 5 cut(s) 417, 533, 647, 1145, 1275
TscAI CASTG 2 cut(s) 110, 829
TseI GCWGC 3 cut(s) 212, 962, 1109
TspDTI ATGAA 5 cut(s) 48, 473, 635, 1011, 1168
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 2 cut(s) 110, 829
Vha464I CTTAAG 2 cut(s) 416, 532
VpaK11BI GGWCC 3 cut(s) 323, 350, 559
XapI RAATTY 1 cut(s) 613
XcmI CCANNNNNNNNNTGG 2 cut(s) 272, 316
XspI CTAG 3 cut(s) 438, 500, 890
ZrmI AGTACT 1 cut(s) 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.