Rroxscaffold_1G00024820

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000597
Physical Location & Seq
Reverse (-)
30887556 .. 30890064
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024820.1

Sequence Viewer

Length: 1098 bp
ATGGTGACAACAAGCTCGGTAGCTGCACATGTTCAAGATCAAGTAGTAGAGGACCATGCAAAGGTTGGCCAAGAAGCTCATGATGATGACCAACAGAAGCAACTTAATGCCGGTGCTCTTTTTTCAATTTACTTGCTATCAAGCCCAAATGGGAGTATGAAGCTTTATGAGTTTGTGATCATATTTGGATGCTTGATTCTGGTTTTGGCCCAAATCCCATCTTTTCACTCACTCAGGCACATCAATCTTGTGTCCATGCTTCTTGGCCTAGCCTATAGCGTTTGTGCCACGGCTGCTTGCATCTACATTGCACTGCCTGACATTAATGAAAATTGCAACTGCATTTTGCCAGGAAATTCTTCCAAAGGGTCCCAAAAGGATTATTCCTTGAAGGGCAGCACTGTAAGTCGCCTTTTTGGGATCTTTAATGCTAATGCCATCATTGCTACAATATATGGCAATGGCATTATTCCAGAAATTCAGGCAACGCTAGCAGCACCAGTGAAGGGAAAGATGTTTAAGGGTCTATCTGTTTGTTATGCTGTTGTGACAACGACTTTCTTCAGTGTTGCTATCTCTGGTTATTGGGCATTTGGAAACAAAGCTGAAGGCCTCATCCTTAGCAACTTCTTGGATGATGGCAAGCCTTTGATCCCAAAGTGGCTCATTTTCATGACCAACGTTTTCACCATGTTCCAACTTTCAGCTGTGGGTGTGGTATATCTGCAGCCCACAAATGAAGTGCTAGAGACAACATTTGCAGACCCAACAAGAAACGAGTTGTCTGCTCGCAATGTGATCCCGAGGTTAATCTCCCGTTCACTGTCTGTCATGTTAGCAACAGCCGTAGCAGCAATGCTTCCATTTTTTGGGGATATCAATTCAGTGATTGGGGCATTTGGTTTTATCCCTCTTGACTTCGTTTTGCCTGCTGTTCTCTTCAACTTGACATTTAAGCCATCGAAACGAAGCCCCATTTACTGGTTGAACATCACTATTGCTGTGGTATTCTCAGTCTTGGGAATTATAGGTGCAGTTGCAGCTATAAGACAAATAAGCATCGATACCAAAACTTATAAGTTATTTGCTAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

365

Amino Acids

39.53

Weight (kDa)

8.14

Isoelectric Point (pI)

28.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 51 - 349 3.7e-34 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1077
AccB7I CCANNNNNTGG 2 cut(s) 869, 981
AclI AACGTT 1 cut(s) 681
AclWI GGATC 3 cut(s) 428, 646, 793
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 2 cut(s) 355, 477
AcuI CTGAAG 2 cut(s) 547, 627
AfiI CCNNNNNNNGG 4 cut(s) 61, 506, 869, 981
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 5 cut(s) 35, 126, 391, 943, 988
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 7 cut(s) 15, 23, 77, 163, 605, 707, 1043
AluI AGCT 7 cut(s) 15, 23, 77, 163, 605, 707, 1043
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 743
AlwI GGATC 3 cut(s) 428, 646, 793
Ama87I CYCGRG 1 cut(s) 802
AoxI GGCC 4 cut(s) 67, 207, 265, 610
ApeKI GCWGC 7 cut(s) 23, 293, 396, 494, 727, 851, 1040
ApoI RAATTY 2 cut(s) 355, 477
AseI ATTAAT 1 cut(s) 324
Asp700I GAANNNNTTC 1 cut(s) 358
AspS9I GGNCC 3 cut(s) 52, 208, 369
AsuHPI GGTGA 2 cut(s) 16, 679
AsuNHI GCTAGC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 802
AvaII GGWCC 2 cut(s) 52, 369
BalI TGGCCA 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 7 cut(s) 10, 280, 408, 506, 739, 863, 1052
BccI CCATC 4 cut(s) 226, 446, 632, 967
BceAI ACGGC 2 cut(s) 306, 830
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BciT130I CCWGG 1 cut(s) 351
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 743
BfaI CTAG 3 cut(s) 269, 491, 746
BfmI CTRYAG 2 cut(s) 274, 725
BisI GCNGC 7 cut(s) 24, 294, 397, 495, 728, 852, 1041
BlsI GCNGC 7 cut(s) 25, 295, 398, 496, 729, 853, 1042
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 2 cut(s) 52, 369
BmeT110I CYCGRG 1 cut(s) 802
BmgT120I GGNCC 3 cut(s) 52, 208, 369
BmiI GGNNCC 2 cut(s) 370, 371
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 3 cut(s) 179, 309, 1068
BmtI GCTAGC 1 cut(s) 494
Bpu10I CCTNAGC 1 cut(s) 620
Bsa29I ATCGAT 1 cut(s) 1062
BsaJI CCNNGG 2 cut(s) 288, 803
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 506, 869, 981
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 2 cut(s) 500, 986
Bse3DI GCAATG 5 cut(s) 306, 441, 466, 799, 861
BseBI CCWGG 1 cut(s) 351
BseCI ATCGAT 1 cut(s) 1062
BseDI CCNNGG 2 cut(s) 288, 803
BseGI GGATG 3 cut(s) 194, 615, 640
BseLI CCNNNNNNNGG 4 cut(s) 61, 506, 869, 981
BseMI GCAATG 5 cut(s) 306, 441, 466, 799, 861
BseMII CTCAG 2 cut(s) 247, 1026
BseNI ACTGG 2 cut(s) 500, 986
BseXI GCAGC 7 cut(s) 10, 280, 408, 506, 739, 863, 1052
BsgI GTGCAG 2 cut(s) 9, 1053
BshFI GGCC 4 cut(s) 69, 209, 267, 612
BshVI ATCGAT 1 cut(s) 1062
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 802
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 4 cut(s) 61, 506, 869, 981
BsmAI GTCTC 1 cut(s) 743
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 4 cut(s) 69, 209, 267, 612
BsoBI CYCGRG 1 cut(s) 802
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 5 cut(s) 37, 177, 420, 651, 798
BspANI GGCC 4 cut(s) 69, 209, 267, 612
BspCNI CTCAG 2 cut(s) 246, 1025
BspDI ATCGAT 1 cut(s) 1062
BspHI TCATGA 2 cut(s) 79, 672
BspLI GGNNCC 2 cut(s) 370, 371
BspMAI CTGCAG 1 cut(s) 729
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 3 cut(s) 428, 646, 793
BsrDI GCAATG 5 cut(s) 306, 441, 466, 799, 861
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 2 cut(s) 500, 986
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 288, 803
BssMI GATC 5 cut(s) 37, 177, 420, 651, 798
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 2 cut(s) 403, 825
Bst6I CTCTTC 1 cut(s) 944
BstC8I GCNNGC 5 cut(s) 298, 492, 644, 790, 930
BstDEI CTNAG 3 cut(s) 233, 620, 1012
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 3 cut(s) 194, 615, 640
BstKTI GATC 5 cut(s) 40, 180, 423, 654, 801
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 5 cut(s) 37, 177, 420, 651, 798
BstMWI GCNNNNNNNGC 5 cut(s) 293, 443, 491, 851, 1040
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 2 cut(s) 274, 725
BstV1I GCAGC 7 cut(s) 10, 280, 408, 506, 739, 863, 1052
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
Bsu15I ATCGAT 1 cut(s) 1062
BsuRI GGCC 4 cut(s) 69, 209, 267, 612
BsuTUI ATCGAT 1 cut(s) 1062
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 3 cut(s) 194, 615, 640
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 6 cut(s) 311, 399, 507, 571, 821, 891
Cac8I GCNNGC 5 cut(s) 298, 492, 644, 790, 930
CciI TCATGA 2 cut(s) 79, 672
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 52, 208, 369
ClaI ATCGAT 1 cut(s) 1062
CviAII CATG 7 cut(s) 29, 56, 80, 256, 673, 691, 832
DdeI CTNAG 3 cut(s) 233, 620, 1012
DpnI GATC 5 cut(s) 39, 179, 422, 653, 800
DpnII GATC 5 cut(s) 37, 177, 420, 651, 798
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 944
EarI CTCTTC 1 cut(s) 944
Eco147I AGGCCT 1 cut(s) 612
Eco32I GATATC 1 cut(s) 877
Eco47I GGWCC 2 cut(s) 52, 369
Eco57I CTGAAG 2 cut(s) 547, 627
Eco88I CYCGRG 1 cut(s) 802
EcoO109I RGGNCCY 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 349
EcoRV GATATC 1 cut(s) 877
FaeI CATG 7 cut(s) 32, 59, 83, 259, 676, 694, 835
FaqI GGGAC 1 cut(s) 355
FatI CATG 7 cut(s) 28, 55, 79, 255, 672, 690, 831
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 7 cut(s) 24, 294, 397, 495, 728, 852, 1041
FokI GGATG 3 cut(s) 201, 602, 647
Fsp4HI GCNGC 7 cut(s) 24, 294, 397, 495, 728, 852, 1041
FspBI CTAG 3 cut(s) 269, 491, 746
GluI GCNGC 7 cut(s) 24, 294, 397, 495, 728, 852, 1041
HaeIII GGCC 4 cut(s) 69, 209, 267, 612
HapII CCGG 1 cut(s) 111
Hin1II CATG 7 cut(s) 32, 59, 83, 259, 676, 694, 835
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 111
HphI GGTGA 2 cut(s) 16, 679
Hpy166II GTNNAC 1 cut(s) 821
Hpy188III TCNNGA 6 cut(s) 35, 80, 473, 673, 802, 914
Hpy8I GTNNAC 1 cut(s) 821
HpyAV CCTTC 3 cut(s) 385, 499, 602
HpyCH4III ACNGT 2 cut(s) 403, 825
HpyCH4IV ACGT 1 cut(s) 681
HpyF10VI GCNNNNNNNGC 5 cut(s) 293, 443, 491, 851, 1040
HpyF3I CTNAG 3 cut(s) 233, 620, 1012
HpySE526I ACGT 1 cut(s) 681
Hsp92II CATG 7 cut(s) 32, 59, 83, 259, 676, 694, 835
KflI GGGWCCC 1 cut(s) 369
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 5 cut(s) 37, 177, 420, 651, 798
Lsp1109I GCAGC 7 cut(s) 10, 280, 408, 506, 739, 863, 1052
LweI GCATC 3 cut(s) 179, 309, 1068
MaeI CTAG 3 cut(s) 269, 491, 746
MaeII ACGT 1 cut(s) 681
MaeIII GTNAC 2 cut(s) 4, 547
MalI GATC 5 cut(s) 39, 179, 422, 653, 800
MboI GATC 5 cut(s) 37, 177, 420, 651, 798
MboII GAAGA 3 cut(s) 351, 553, 931
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 6 cut(s) 126, 331, 355, 477, 880, 1023
MluNI TGGCCA 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 721
MnlI CCTC 4 cut(s) 43, 623, 798, 921
Mox20I TGGCCA 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 358
MscI TGGCCA 1 cut(s) 69
MseI TTAA 6 cut(s) 105, 324, 426, 519, 809, 954
MslI CAYNNNNRTG 2 cut(s) 84, 671
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 707
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 5 cut(s) 293, 443, 491, 851, 1040
NdeII GATC 5 cut(s) 37, 177, 420, 651, 798
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 7 cut(s) 32, 59, 83, 259, 676, 694, 835
NlaIV GGNNCC 2 cut(s) 370, 371
NmuCI GTSAC 2 cut(s) 4, 547
NspI RCATGY 1 cut(s) 32
PagI TCATGA 2 cut(s) 79, 672
PceI AGGCCT 1 cut(s) 612
PciI ACATGT 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 196
PflMI CCANNNNNTGG 2 cut(s) 869, 981
PkrI GCNGC 7 cut(s) 25, 295, 398, 496, 729, 853, 1042
PpuMI RGGWCCY 1 cut(s) 369
PscI ACATGT 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 324
PsiI TTATAA 1 cut(s) 1077
Psp1406I AACGTT 1 cut(s) 681
Psp5II RGGWCCY 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 2 cut(s) 370, 371
PspPI GGNCC 3 cut(s) 52, 208, 369
PspPPI RGGWCCY 1 cut(s) 369
PstI CTGCAG 1 cut(s) 729
PsuI RGATCY 1 cut(s) 420
PvuII CAGCTG 1 cut(s) 707
RseI CAYNNNNRTG 2 cut(s) 84, 671
SaqAI TTAA 6 cut(s) 105, 324, 426, 519, 809, 954
SatI GCNGC 7 cut(s) 24, 294, 397, 495, 728, 852, 1041
Sau3AI GATC 5 cut(s) 37, 177, 420, 651, 798
Sau96I GGNCC 3 cut(s) 52, 208, 369
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 118
SfaNI GCATC 3 cut(s) 179, 309, 1068
SfcI CTRYAG 2 cut(s) 274, 725
SinI GGWCC 2 cut(s) 52, 369
SmiMI CAYNNNNRTG 2 cut(s) 84, 671
Sse9I AATT 6 cut(s) 126, 331, 355, 477, 880, 1023
SseBI AGGCCT 1 cut(s) 612
SspMI CTAG 3 cut(s) 269, 491, 746
StuI AGGCCT 1 cut(s) 612
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 2 cut(s) 403, 825
TaiI ACGT 1 cut(s) 684
TaqI TCGA 2 cut(s) 962, 1062
TasI AATT 6 cut(s) 126, 331, 355, 477, 880, 1023
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 6 cut(s) 105, 324, 426, 519, 809, 954
Tru9I TTAA 6 cut(s) 105, 324, 426, 519, 809, 954
TscAI CASTG 6 cut(s) 318, 406, 507, 571, 828, 891
TseFI GTSAC 2 cut(s) 4, 547
TseI GCWGC 7 cut(s) 23, 293, 396, 494, 727, 851, 1040
Tsp45I GTSAC 2 cut(s) 4, 547
TspDTI ATGAA 4 cut(s) 173, 342, 661, 753
TspRI CASTG 6 cut(s) 318, 406, 507, 571, 828, 891
Van91I CCANNNNNTGG 2 cut(s) 869, 981
VpaK11BI GGWCC 2 cut(s) 52, 369
VspI ATTAAT 1 cut(s) 324
XapI RAATTY 2 cut(s) 355, 477
XceI RCATGY 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 358
XspI CTAG 3 cut(s) 269, 491, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.