Rroxscaffold_1G00024860

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000597
Physical Location & Seq
Reverse (-)
30921598 .. 30923099
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024860.1

Sequence Viewer

Length: 399 bp
ATGGGGACTCTGGCACCAAACTCCATAGCTGCAGAAGCATACGATCGTAATCAAGATCAAGTAGTAGATGGTAATCATGCCAAGGTTGGTCAAGATGATGATGACCAACAGAACCAACTGGATGCCGGTGCCAAGTTTGTTCTTAAATCCAAAGGATCATGGGTGCACTGTGGTTATCATTTGACTACTTCAATAGTTGCTCCACCTCTGCTAAGTCTACCGTACGCTTTCACATTCCTCGGATGGACGGGCGGAGTTATCTGTCTGGTGATCGGAGCATTAGTAACTTTCTACTCGTACAACTTAATCTCTCTGGTGCTCGAGCATTATGCTCAATTGGGTCATCGCCAACTTCGCTTCAGAGACATGGCTCGTGACATTTTAGTTTTGCTCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

132

Amino Acids

14.55

Weight (kDa)

5.86

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 51 - 127 5.3e-15 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 13, 128
AccI GTMKAC 1 cut(s) 217
AciI CCGC 1 cut(s) 252
AclWI GGATC 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 343
AfaI GTAC 2 cut(s) 224, 299
AgsI TTSAA 1 cut(s) 192
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw21I GWGCWC 2 cut(s) 168, 321
Alw26I GTCTC 1 cut(s) 357
Alw44I GTGCAC 1 cut(s) 164
AlwI GGATC 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 320
ApaLI GTGCAC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 320
BaeGI GKGCMC 1 cut(s) 168
BanI GGYRCC 2 cut(s) 13, 128
BauI CACGAG 1 cut(s) 372
Bbv12I GWGCWC 2 cut(s) 168, 321
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 62, 237
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BcoDI GTCTC 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 320
BmiI GGNNCC 2 cut(s) 15, 130
BmsI GCATC 1 cut(s) 112
BsaBI GATNNNNATC 2 cut(s) 48, 72
BsaJI CCNNGG 2 cut(s) 81, 238
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 123
Bse8I GATNNNNATC 2 cut(s) 48, 72
BseDI CCNNGG 2 cut(s) 81, 238
BseGI GGATG 2 cut(s) 127, 248
BseJI GATNNNNATC 2 cut(s) 48, 72
BseNI ACTGG 1 cut(s) 123
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 46
BshNI GGYRCC 2 cut(s) 13, 128
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 168, 321
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 126
BsiWI CGTACG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 168, 321
Bsp143I GATC 4 cut(s) 43, 55, 155, 270
BspACI CCGC 1 cut(s) 252
BspLI GGNNCC 2 cut(s) 15, 130
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 163
BspT107I GGYRCC 2 cut(s) 13, 128
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 81, 238
BssMI GATC 4 cut(s) 43, 55, 155, 270
BssSI CACGAG 1 cut(s) 372
BssT1I CCWWGG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 170, 222
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 2 cut(s) 127, 248
BstKTI GATC 4 cut(s) 46, 58, 158, 273
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 4 cut(s) 43, 55, 155, 270
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 35, 354
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 329
BtsCI GGATG 2 cut(s) 127, 248
BtsIMutI CAGTG 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 125
Csp6I GTAC 2 cut(s) 223, 298
CviAII CATG 3 cut(s) 77, 159, 367
CviJI RGCY 2 cut(s) 29, 371
CviKI_1 RGCY 2 cut(s) 29, 371
CviQI GTAC 2 cut(s) 223, 298
DdeI CTNAG 1 cut(s) 212
DpnI GATC 4 cut(s) 45, 57, 157, 272
DpnII GATC 4 cut(s) 43, 55, 155, 270
EciI GGCGGA 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 343
Eco88I CYCGRG 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 3 cut(s) 80, 162, 370
FaiI YATR 6 cut(s) 26, 40, 78, 160, 330, 368
FaqI GGGAC 1 cut(s) 19
FatI CATG 3 cut(s) 76, 158, 366
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 134, 255
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HapII CCGG 1 cut(s) 126
Hin1II CATG 3 cut(s) 80, 162, 370
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 166, 218
Hpy188I TCNGA 3 cut(s) 242, 275, 362
Hpy188III TCNNGA 3 cut(s) 53, 92, 374
Hpy8I GTNNAC 2 cut(s) 166, 218
HpyCH4III ACNGT 2 cut(s) 170, 222
HpyCH4V TGCA 2 cut(s) 32, 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 354
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 3 cut(s) 80, 162, 370
Kzo9I GATC 4 cut(s) 43, 55, 155, 270
LmnI GCTCC 3 cut(s) 205, 275, 396
LpnPI CCDG 4 cut(s) 104, 139, 251, 299
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 283, 374
MalI GATC 4 cut(s) 45, 57, 157, 272
MboI GATC 4 cut(s) 43, 55, 155, 270
MfeI CAATTG 1 cut(s) 335
MhlI GDGCHC 2 cut(s) 168, 321
MluCI AATT 1 cut(s) 335
MnlI CCTC 2 cut(s) 216, 248
MseI TTAA 2 cut(s) 144, 305
MspI CCGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 335
MwoI GCNNNNNNNGC 2 cut(s) 35, 354
NdeII GATC 4 cut(s) 43, 55, 155, 270
NlaIII CATG 3 cut(s) 80, 162, 370
NlaIV GGNNCC 2 cut(s) 15, 130
NmuCI GTSAC 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 320
Pfl23II CGTACG 1 cut(s) 222
PkrI GCNGC 1 cut(s) 31
Ple19I CGATCG 1 cut(s) 46
PspLI CGTACG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 15, 130
PspXI VCTCGAGB 1 cut(s) 320
PstI CTGCAG 1 cut(s) 34
PvuI CGATCG 1 cut(s) 46
RsaI GTAC 2 cut(s) 224, 299
RsaNI GTAC 2 cut(s) 223, 298
SaqAI TTAA 2 cut(s) 144, 305
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 4 cut(s) 43, 55, 155, 270
SduI GDGCHC 2 cut(s) 168, 321
SetI ASST 3 cut(s) 31, 87, 208
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 30
Sfr274I CTCGAG 1 cut(s) 320
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 1 cut(s) 335
SsiI CCGC 1 cut(s) 252
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 170, 222
TaqI TCGA 1 cut(s) 321
TasI AATT 1 cut(s) 335
Tru1I TTAA 2 cut(s) 144, 305
Tru9I TTAA 2 cut(s) 144, 305
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 374
TspRI CASTG 1 cut(s) 173
VneI GTGCAC 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.