Rmu_ssc0000047.1_g000015

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000047.1
OG0000597
Physical Location & Seq
Forward (+)
79369 .. 79909
541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000047.1_g000015.1.cds

Sequence Viewer

Length: 426 bp
atgactaatgtcttcaccttcttgcaagtagcagctgttagtgtggtttacttacaaccaacaaatgaagtgctcgaacgcaagtttgtcaacgccaagattgatcagttctctgttcgaaatgtagtgccaaggttggtttaccgatcattgtctgtcgtgatagccacaacagttgcagctatgtttcctttctttggagacatcaatgctttaatcggagcatttggttgcattcctctcgacttcattttgccaatggtgttctacaatgttgtattcaagccatccaagtacagccttcttttctggggaaacacaataattgcttcaaccttttcagcattaggagtgttgggggcaatatcttcaatccgtcaaataattcttgatgccaacatttacagtttgtttgctaacgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

141

Amino Acids

15.58

Weight (kDa)

9.25

Isoelectric Point (pI)

26.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 3 cut(s) 283, 333, 372
AluBI AGCT 2 cut(s) 35, 182
AluI AGCT 2 cut(s) 35, 182
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 32, 179
AsuHPI GGTGA 1 cut(s) 7
AsuII TTCGAA 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 2 cut(s) 44, 191
BccI CCATC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 195
BisI GCNGC 2 cut(s) 33, 180
BlsI GCNGC 2 cut(s) 34, 181
BmsI GCATC 1 cut(s) 382
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 4
Bpu14I TTCGAA 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 44, 191
BsiHKAI GWGCWC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 195
BsmI GAATGC 1 cut(s) 234
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 103, 146
BspT104I TTCGAA 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 2 cut(s) 103, 146
BssT1I CCWWGG 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 175, 407
BstBI TTCGAA 1 cut(s) 118
BstF5I GGATG 1 cut(s) 287
BstKTI GATC 2 cut(s) 106, 149
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 2 cut(s) 103, 146
BstPAI GACNNNNGTC 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 44, 191
BstV2I GAAGAC 1 cut(s) 4
BtsCI GGATG 1 cut(s) 287
Csp6I GTAC 1 cut(s) 295
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviJI RGCY 5 cut(s) 35, 167, 182, 286, 300
CviKI_1 RGCY 5 cut(s) 35, 167, 182, 286, 300
CviQI GTAC 1 cut(s) 295
DpnI GATC 2 cut(s) 105, 148
DpnII GATC 2 cut(s) 103, 146
Eco130I CCWWGG 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 131
FaiI YATR 2 cut(s) 185, 424
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 33, 180
FokI GGATG 1 cut(s) 274
Fsp4HI GCNGC 2 cut(s) 33, 180
GluI GCNGC 2 cut(s) 33, 180
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 3 cut(s) 49, 91, 142
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 3 cut(s) 160, 242, 389
Hpy8I GTNNAC 3 cut(s) 49, 91, 142
HpyAV CCTTC 2 cut(s) 28, 311
HpyCH4III ACNGT 2 cut(s) 175, 407
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 3 cut(s) 25, 179, 234
HpySE526I ACGT 1 cut(s) 420
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 103, 146
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 1 cut(s) 295
Lsp1109I GCAGC 2 cut(s) 44, 191
LweI GCATC 1 cut(s) 382
MaeII ACGT 1 cut(s) 420
MalI GATC 2 cut(s) 105, 148
MboI GATC 2 cut(s) 103, 146
MboII GAAGA 2 cut(s) 4, 360
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 2 cut(s) 324, 384
MnlI CCTC 1 cut(s) 249
MseI TTAA 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 234
NdeII GATC 2 cut(s) 103, 146
NspV TTCGAA 1 cut(s) 118
PctI GAATGC 1 cut(s) 234
PkrI GCNGC 2 cut(s) 34, 181
PshAI GACNNNNGTC 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 2 cut(s) 33, 180
Sau3AI GATC 2 cut(s) 103, 146
SduI GDGCHC 1 cut(s) 75
SetI ASST 6 cut(s) 20, 37, 137, 184, 338, 423
SfaNI GCATC 1 cut(s) 382
SfuI TTCGAA 1 cut(s) 118
Sse9I AATT 2 cut(s) 324, 384
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 2 cut(s) 175, 407
TaiI ACGT 1 cut(s) 423
TaqI TCGA 3 cut(s) 75, 118, 243
TasI AATT 2 cut(s) 324, 384
TatI WGTACW 1 cut(s) 294
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TseI GCWGC 2 cut(s) 32, 179
TspDTI ATGAA 2 cut(s) 81, 238
TspGWI ACGGA 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.