Rh1AG139000

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000597
Physical Location & Seq
Forward (+)
26319844 .. 26335050
15207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG139000.1

Sequence Viewer

Length: 549 bp
ATGTCTAGGAATTGGGCGTTTGGCAACCAAGCTATGGGAACAGTTCTTTCCAATTGTATGGGTGTTGATGAGAAGTCTGTACTTCCTACCTTGTTTCTCATGACCAACGTGAAGTCTTGGCTATCACAGTGTGTTGCTATATCGGGATATTGGGCATTTGGTAATCAGGCCAAAGGTACAATTTTACTCAACTTTCTAGTTGATGAGAAGCCTCTGTTGCCGACTTGGGTTCTCTTGAGGACTAATGTCTTCACCTTCTTGCAAGTAGCAGCTGTTAGTGTGGTTTACTTACAACCAACAAATGAAGTACTGGAACGCAAGTTTGTAAACGCCGAGATTGATCAGTTCTCTGTTCGAAATGTAGTACCAAAGTTGGTTTATCGATCATTGTCTGTCGTGATAGCCACAACAGTTGCAGCTATGTGTCCTTTCTTTGGAGACATCAATGCTTTAATCGGAGCATTTGGTTGCATTCCTCTCGACTTAATTTTGCCAATGGTGTTCCACAATGATGTATTCAAGCCATCCAAGTACAGCCTTCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

182

Amino Acids

20.25

Weight (kDa)

8.37

Isoelectric Point (pI)

19.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 30 - 179 9.9e-24 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AdeI CACNNNGTG 1 cut(s) 131
AfaI GTAC 5 cut(s) 81, 178, 309, 366, 533
AfiI CCNNNNNNNGG 2 cut(s) 34, 434
AgsI TTSAA 1 cut(s) 520
AluBI AGCT 3 cut(s) 32, 272, 419
AluI AGCT 3 cut(s) 32, 272, 419
Alw26I GTCTC 1 cut(s) 432
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 2 cut(s) 269, 416
AsuHPI GGTGA 1 cut(s) 244
AsuII TTCGAA 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 281, 428
BccI CCATC 1 cut(s) 532
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 432
BfaI CTAG 2 cut(s) 6, 197
BisI GCNGC 2 cut(s) 270, 417
BlsI GCNGC 2 cut(s) 271, 418
BmcAI AGTACT 1 cut(s) 309
BoxI GACNNNNGTC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 241
Bpu14I TTCGAA 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 256
Bsa29I ATCGAT 1 cut(s) 382
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 434
Bse1I ACTGG 1 cut(s) 315
BseCI ATCGAT 1 cut(s) 382
BseGI GGATG 1 cut(s) 524
BseLI CCNNNNNNNGG 2 cut(s) 34, 434
BseNI ACTGG 1 cut(s) 315
BseXI GCAGC 2 cut(s) 281, 428
BshFI GGCC 1 cut(s) 170
BshVI ATCGAT 1 cut(s) 382
BslI CCNNNNNNNGG 2 cut(s) 34, 434
BsmAI GTCTC 1 cut(s) 432
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 355
Bsp143I GATC 2 cut(s) 340, 383
BspANI GGCC 1 cut(s) 170
BspDI ATCGAT 1 cut(s) 382
BspHI TCATGA 1 cut(s) 99
BspT104I TTCGAA 1 cut(s) 355
BsrI ACTGG 1 cut(s) 315
BssMI GATC 2 cut(s) 340, 383
Bst4CI ACNGT 3 cut(s) 43, 129, 412
BstBI TTCGAA 1 cut(s) 355
BstF5I GGATG 1 cut(s) 524
BstKTI GATC 2 cut(s) 343, 386
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 2 cut(s) 340, 383
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstPAI GACNNNNGTC 1 cut(s) 245
BstV1I GCAGC 2 cut(s) 281, 428
BstV2I GAAGAC 1 cut(s) 241
BstXI CCANNNNNNTGG 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 382
BsuRI GGCC 1 cut(s) 170
BsuTUI ATCGAT 1 cut(s) 382
BtsCI GGATG 1 cut(s) 524
BtsIMutI CAGTG 1 cut(s) 134
CciI TCATGA 1 cut(s) 99
ClaI ATCGAT 1 cut(s) 382
Csp6I GTAC 5 cut(s) 80, 177, 308, 365, 532
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 1 cut(s) 100
CviJI RGCY 9 cut(s) 32, 121, 170, 211, 272, 404, 419, 523, 537
CviKI_1 RGCY 9 cut(s) 32, 121, 170, 211, 272, 404, 419, 523, 537
CviQI GTAC 5 cut(s) 80, 177, 308, 365, 532
DpnI GATC 2 cut(s) 342, 385
DpnII GATC 2 cut(s) 340, 383
DraIII CACNNNGTG 1 cut(s) 131
FaeI CATG 1 cut(s) 103
FaiI YATR 5 cut(s) 35, 59, 101, 140, 422
FatI CATG 1 cut(s) 99
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 270, 417
FokI GGATG 1 cut(s) 511
Fsp4HI GCNGC 2 cut(s) 270, 417
FspBI CTAG 2 cut(s) 6, 197
GluI GCNGC 2 cut(s) 270, 417
HaeIII GGCC 1 cut(s) 170
Hin1II CATG 1 cut(s) 103
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 2 cut(s) 286, 328
Hpy188I TCNGA 2 cut(s) 458, 548
Hpy188III TCNNGA 5 cut(s) 100, 144, 235, 397, 479
Hpy8I GTNNAC 2 cut(s) 286, 328
HpyAV CCTTC 2 cut(s) 265, 548
HpyCH4III ACNGT 3 cut(s) 43, 129, 412
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 262, 416, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 2 cut(s) 340, 383
LmnI GCTCC 1 cut(s) 458
LpnPI CCDG 2 cut(s) 152, 296
Lsp1109I GCAGC 2 cut(s) 281, 428
MaeI CTAG 2 cut(s) 6, 197
MaeII ACGT 1 cut(s) 108
MalI GATC 2 cut(s) 342, 385
MboI GATC 2 cut(s) 340, 383
MboII GAAGA 1 cut(s) 241
MfeI CAATTG 1 cut(s) 52
MluCI AATT 4 cut(s) 10, 52, 180, 486
MnlI CCTC 3 cut(s) 222, 231, 486
MseI TTAA 2 cut(s) 452, 485
MslI CAYNNNNRTG 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 272
MunI CAATTG 1 cut(s) 52
Mva1269I GAATGC 1 cut(s) 471
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 2 cut(s) 340, 383
NlaIII CATG 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 358
NspV TTCGAA 1 cut(s) 355
PagI TCATGA 1 cut(s) 99
PctI GAATGC 1 cut(s) 471
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 2 cut(s) 271, 418
PshAI GACNNNNGTC 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 5 cut(s) 81, 178, 309, 366, 533
RsaNI GTAC 5 cut(s) 80, 177, 308, 365, 532
RseI CAYNNNNRTG 1 cut(s) 510
SaqAI TTAA 2 cut(s) 452, 485
SatI GCNGC 2 cut(s) 270, 417
Sau3AI GATC 2 cut(s) 340, 383
ScaI AGTACT 1 cut(s) 309
SetI ASST 7 cut(s) 34, 92, 111, 178, 257, 274, 421
SfuI TTCGAA 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 4 cut(s) 10, 52, 180, 486
SspMI CTAG 2 cut(s) 6, 197
TaaI ACNGT 3 cut(s) 43, 129, 412
TaiI ACGT 1 cut(s) 111
TaqI TCGA 3 cut(s) 355, 382, 480
TasI AATT 4 cut(s) 10, 52, 180, 486
TatI WGTACW 3 cut(s) 79, 307, 531
Tru1I TTAA 2 cut(s) 452, 485
Tru9I TTAA 2 cut(s) 452, 485
TscAI CASTG 1 cut(s) 134
TseI GCWGC 2 cut(s) 269, 416
TspDTI ATGAA 1 cut(s) 318
TspRI CASTG 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 34
XspI CTAG 2 cut(s) 6, 197
ZrmI AGTACT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.