Rmu_ssc0000047.1_g000016

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000047.1
OG0000597
Physical Location & Seq
Forward (+)
81851 .. 84983
3133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000047.1_g000016.1.cds

Sequence Viewer

Length: 942 bp
atgggaactgttgctgctccatacatgatggaattagcatctgagaagcaaaatggtgccaggccgcccggtggccctccgaaagagcttgacgccggagctctcttcgttctcaaatcgcaagggtcgtggttacatgttgggtaccacttgacgacatctatagtggctccggtgcttctaagtcttccgtttgcgatggccttgctcggctgggttgggggagtcatttgtgtagccttggcaggtttggtcaccttctactcctacaatcttctctctttagttcttgagcaccaagaaaagcttgggcatcgtcaacttcgctttcgagacatggccaaagacattttaggtcctgcatggggcaaatattttgtcggtcctctgcaatttgggatatgctatggtgcagtcatcgcttgcacattacttggagggcagagccttaagtttatttacttgctctctaatccagatggaacaatgaagctgtaccagtttattatgatgttcggaggcgtcacactctttttggctcaaatgccatccttccactccttaaggcatattaacctcgtttctctaatcctttgtcttgcatatagcgcctgcgtcactgctggctgcatatacgttgggcatacgaacaatgctcctgtaaaggactattccataaaaggaagtacaaaagatcggtattttggtatctttaatggcatctcaatcatcgctaccacatacgcaagtggaataattccggagatacagggactgggccgagctggcaaccggggaagaagggtcaagaaatatgtcaagcccttggcttttttcttggcttcggtcaagaaagtgaggatttttcccggtcaagaagctaccggtggagctgcgtttttctcctccatggtcaccacctcagcttttcgtagctggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

313

Amino Acids

33.91

Weight (kDa)

9.64

Isoelectric Point (pI)

33.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 236
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 2 cut(s) 56, 144
AccIII TCCGGA 1 cut(s) 760
AciI CCGC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 339
AcyI GRCGYC 2 cut(s) 93, 522
AfaI GTAC 3 cut(s) 146, 497, 688
AfiI CCNNNNNNNGG 2 cut(s) 71, 365
AflII CTTAAG 2 cut(s) 449, 562
AflIII ACRYGT 1 cut(s) 136
AgeI ACCGGT 1 cut(s) 884
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 9 cut(s) 88, 101, 307, 493, 785, 881, 893, 926, 936
AluI AGCT 9 cut(s) 88, 101, 307, 493, 785, 881, 893, 926, 936
Alw21I GWGCWC 2 cut(s) 103, 297
Alw26I GTCTC 1 cut(s) 327
AlwNI CAGNNNCTG 1 cut(s) 775
Aor13HI TCCGGA 1 cut(s) 760
AoxI GGCC 5 cut(s) 62, 73, 201, 339, 778
ApeKI GCWGC 3 cut(s) 14, 627, 893
ArsI GACNNNNNNTTYG 2 cut(s) 363, 395
AsiGI ACCGGT 1 cut(s) 884
Asp718I GGTACC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 611
AspS9I GGNCC 4 cut(s) 74, 356, 383, 778
AsuC2I CCSGG 3 cut(s) 69, 794, 870
AsuHPI GGTGA 2 cut(s) 247, 907
AvaII GGWCC 2 cut(s) 356, 383
BalI TGGCCA 1 cut(s) 341
BanI GGYRCC 2 cut(s) 56, 144
BanII GRGCYC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 103, 297
BbvCI CCTCAGC 1 cut(s) 922
BbvI GCAGC 2 cut(s) 614, 880
BccI CCATC 4 cut(s) 22, 193, 473, 556
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 1 cut(s) 61
BcnI CCSGG 3 cut(s) 69, 794, 870
BcoDI GTCTC 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 612
BfrI CTTAAG 2 cut(s) 449, 562
BfuAI ACCTGC 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 786
BisI GCNGC 4 cut(s) 15, 65, 628, 894
BlsI GCNGC 4 cut(s) 16, 66, 629, 895
Bme1390I CCNGG 4 cut(s) 61, 69, 794, 870
Bme18I GGWCC 2 cut(s) 356, 383
BmgT120I GGNCC 4 cut(s) 74, 356, 383, 778
BmiI GGNNCC 3 cut(s) 58, 146, 171
BmrFI CCNGG 4 cut(s) 61, 69, 794, 870
BmrI ACTGGG 1 cut(s) 785
BmsI GCATC 3 cut(s) 47, 322, 729
BmuI ACTGGG 1 cut(s) 785
BpiI GAAGAC 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 922
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 3 cut(s) 69, 794, 870
BsaHI GRCGYC 2 cut(s) 93, 522
BsaJI CCNNGG 4 cut(s) 240, 793, 825, 909
BsaWI WCCGGW 3 cut(s) 172, 760, 884
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 365
Bse118I RCCGGY 1 cut(s) 884
Bse1I ACTGG 2 cut(s) 499, 780
BseAI TCCGGA 1 cut(s) 760
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 4 cut(s) 240, 793, 825, 909
BseGI GGATG 1 cut(s) 548
BseLI CCNNNNNNNGG 2 cut(s) 71, 365
BseMII CTCAG 2 cut(s) 33, 936
BseNI ACTGG 2 cut(s) 499, 780
BseRI GAGGAG 1 cut(s) 895
BseXI GCAGC 2 cut(s) 614, 880
BseYI CCCAGC 1 cut(s) 213
BsgI GTGCAG 1 cut(s) 432
BshFI GGCC 5 cut(s) 64, 75, 203, 341, 780
BshNI GGYRCC 2 cut(s) 56, 144
BshTI ACCGGT 1 cut(s) 884
BsiHKAI GWGCWC 2 cut(s) 103, 297
BsiSI CCGG 7 cut(s) 69, 96, 173, 761, 793, 870, 885
BslFI GGGAC 1 cut(s) 786
BslI CCNNNNNNNGG 2 cut(s) 71, 365
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 1 cut(s) 786
BsnI GGCC 5 cut(s) 64, 75, 203, 341, 780
Bsp1286I GDGCHC 2 cut(s) 103, 297
Bsp13I TCCGGA 1 cut(s) 760
Bsp143I GATC 1 cut(s) 694
Bsp19I CCATGG 1 cut(s) 909
BspACI CCGC 1 cut(s) 65
BspANI GGCC 5 cut(s) 64, 75, 203, 341, 780
BspCNI CTCAG 2 cut(s) 34, 935
BspEI TCCGGA 1 cut(s) 760
BspLI GGNNCC 3 cut(s) 58, 146, 171
BspMI ACCTGC 1 cut(s) 236
BspT107I GGYRCC 2 cut(s) 56, 144
BspTI CTTAAG 2 cut(s) 449, 562
BsrFI RCCGGY 1 cut(s) 884
BsrI ACTGG 2 cut(s) 499, 780
BssAI RCCGGY 1 cut(s) 884
BssECI CCNNGG 4 cut(s) 240, 793, 825, 909
BssMI GATC 1 cut(s) 694
BssNI GRCGYC 2 cut(s) 93, 522
BssT1I CCWWGG 3 cut(s) 240, 825, 909
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 2 cut(s) 93, 522
BstAFI CTTAAG 2 cut(s) 449, 562
BstC8I GCNNGC 4 cut(s) 424, 613, 625, 787
BstDEI CTNAG 3 cut(s) 42, 182, 922
BstDSI CCRYGG 1 cut(s) 909
BstEII GGTNACC 2 cut(s) 253, 913
BstF5I GGATG 1 cut(s) 548
BstH2I RGCGCY 1 cut(s) 612
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 1 cut(s) 697
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 1 cut(s) 694
BstMWI GCNNNNNNNGC 3 cut(s) 419, 608, 786
BstNI CCWGG 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 140
BstPI GGTNACC 2 cut(s) 253, 913
BstSCI CCNGG 4 cut(s) 59, 67, 792, 868
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 614, 880
BstV2I GAAGAC 1 cut(s) 179
BsuRI GGCC 5 cut(s) 64, 75, 203, 341, 780
BtgI CCRYGG 1 cut(s) 909
BtgZI GCGATG 3 cut(s) 212, 403, 715
BtsCI GGATG 1 cut(s) 548
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 618
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 4 cut(s) 424, 613, 625, 787
CaiI CAGNNNCTG 1 cut(s) 775
CfoI GCGC 1 cut(s) 611
Cfr10I RCCGGY 1 cut(s) 884
Cfr13I GGNCC 4 cut(s) 74, 356, 383, 778
CseI GACGC 3 cut(s) 101, 511, 604
Csp6I GTAC 3 cut(s) 145, 496, 687
CspAI ACCGGT 1 cut(s) 884
CspCI CAANNNNNGTGG 2 cut(s) 110, 145
CviAII CATG 5 cut(s) 25, 137, 337, 363, 910
CviQI GTAC 3 cut(s) 145, 496, 687
DdeI CTNAG 3 cut(s) 42, 182, 922
DpnI GATC 1 cut(s) 696
DpnII GATC 1 cut(s) 694
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Ecl136II GAGCTC 1 cut(s) 101
Eco130I CCWWGG 3 cut(s) 240, 825, 909
Eco24I GRGCYC 1 cut(s) 103
Eco47I GGWCC 2 cut(s) 356, 383
Eco53kI GAGCTC 1 cut(s) 101
Eco91I GGTNACC 2 cut(s) 253, 913
EcoICRI GAGCTC 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 356
EcoO65I GGTNACC 2 cut(s) 253, 913
EcoRII CCWGG 1 cut(s) 59
EcoT14I CCWWGG 3 cut(s) 240, 825, 909
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 3 cut(s) 240, 825, 909
FaeI CATG 5 cut(s) 28, 140, 340, 366, 913
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 786
FatI CATG 5 cut(s) 24, 136, 336, 362, 909
Fnu4HI GCNGC 4 cut(s) 15, 65, 628, 894
FokI GGATG 1 cut(s) 535
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 4 cut(s) 15, 65, 628, 894
GlaI GCGC 1 cut(s) 610
GluI GCNGC 4 cut(s) 15, 65, 628, 894
GsaI CCCAGC 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 612
HaeIII GGCC 5 cut(s) 64, 75, 203, 341, 780
HapII CCGG 7 cut(s) 69, 96, 173, 761, 793, 870, 885
HgaI GACGC 3 cut(s) 101, 511, 604
HhaI GCGC 1 cut(s) 611
Hin1I GRCGYC 2 cut(s) 93, 522
Hin1II CATG 5 cut(s) 28, 140, 340, 366, 913
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HincII GTYRAC 1 cut(s) 320
HindII GTYRAC 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 1 cut(s) 225
HpaII CCGG 7 cut(s) 69, 96, 173, 761, 793, 870, 885
HphI GGTGA 2 cut(s) 247, 907
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 3 cut(s) 43, 81, 518
Hpy188III TCNNGA 7 cut(s) 290, 332, 476, 761, 808, 850, 875
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 3 cut(s) 268, 562, 795
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 6 cut(s) 362, 391, 413, 426, 602, 630
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 608, 786
HpyF3I CTNAG 3 cut(s) 42, 182, 922
HpySE526I ACGT 1 cut(s) 636
Hsp92I GRCGYC 2 cut(s) 93, 522
Hsp92II CATG 5 cut(s) 28, 140, 340, 366, 913
HspAI GCGC 1 cut(s) 609
Kpn2I TCCGGA 1 cut(s) 760
KpnI GGTACC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 694
LmnI GCTCC 5 cut(s) 22, 98, 175, 661, 890
Lsp1109I GCAGC 2 cut(s) 614, 880
LweI GCATC 3 cut(s) 47, 322, 729
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 5 cut(s) 132, 253, 523, 616, 913
MalI GATC 1 cut(s) 696
MboI GATC 1 cut(s) 694
MboII GAAGA 4 cut(s) 97, 179, 266, 810
MhlI GDGCHC 2 cut(s) 103, 297
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 3 cut(s) 32, 392, 756
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 234
MnlI CCTC 8 cut(s) 87, 396, 431, 512, 587, 852, 916, 931
Mox20I TGGCCA 1 cut(s) 341
MroI TCCGGA 1 cut(s) 760
MscI TGGCCA 1 cut(s) 341
MseI TTAA 4 cut(s) 450, 563, 573, 714
Msp20I TGGCCA 1 cut(s) 341
MspCI CTTAAG 2 cut(s) 449, 562
MspI CCGG 7 cut(s) 69, 96, 173, 761, 793, 870, 885
MspR9I CCNGG 4 cut(s) 61, 69, 794, 870
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 3 cut(s) 419, 608, 786
NciI CCSGG 3 cut(s) 69, 794, 870
NcoI CCATGG 1 cut(s) 909
NdeII GATC 1 cut(s) 694
NlaIII CATG 5 cut(s) 28, 140, 340, 366, 913
NlaIV GGNNCC 3 cut(s) 58, 146, 171
NmeAIII GCCGAG 2 cut(s) 189, 806
NmuCI GTSAC 4 cut(s) 253, 523, 616, 913
NspI RCATGY 1 cut(s) 140
PciI ACATGT 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PinAI ACCGGT 1 cut(s) 884
PkrI GCNGC 4 cut(s) 16, 66, 629, 895
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 356
PscI ACATGT 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 59
PspEI GGTNACC 2 cut(s) 253, 913
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 3 cut(s) 58, 146, 171
PspPI GGNCC 4 cut(s) 74, 356, 383, 778
PspPPI RGGWCCY 1 cut(s) 356
PstNI CAGNNNCTG 1 cut(s) 775
RsaI GTAC 3 cut(s) 146, 497, 688
RsaNI GTAC 3 cut(s) 145, 496, 687
SacI GAGCTC 1 cut(s) 103
SaqAI TTAA 4 cut(s) 450, 563, 573, 714
SatI GCNGC 4 cut(s) 15, 65, 628, 894
Sau3AI GATC 1 cut(s) 694
Sau96I GGNCC 4 cut(s) 74, 356, 383, 778
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 4 cut(s) 61, 69, 794, 870
SduI GDGCHC 2 cut(s) 103, 297
SfaNI GCATC 3 cut(s) 47, 322, 729
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 2 cut(s) 356, 383
SmlI CTYRAG 3 cut(s) 290, 449, 562
SmoI CTYRAG 3 cut(s) 290, 449, 562
Sse9I AATT 3 cut(s) 32, 392, 756
SsiI CCGC 1 cut(s) 65
SspI AATATT 1 cut(s) 374
SstI GAGCTC 1 cut(s) 103
StyD4I CCNGG 4 cut(s) 59, 67, 792, 868
StyI CCWWGG 3 cut(s) 240, 825, 909
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 639
TaqI TCGA 1 cut(s) 331
TaqII GACCGA 2 cut(s) 371, 835
TasI AATT 3 cut(s) 32, 392, 756
TatI WGTACW 1 cut(s) 686
TauI GCSGC 1 cut(s) 67
Tru1I TTAA 4 cut(s) 450, 563, 573, 714
Tru9I TTAA 4 cut(s) 450, 563, 573, 714
TscAI CASTG 1 cut(s) 625
TseFI GTSAC 4 cut(s) 253, 523, 616, 913
TseI GCWGC 3 cut(s) 14, 627, 893
Tsp45I GTSAC 4 cut(s) 253, 523, 616, 913
TspDTI ATGAA 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 1 cut(s) 625
Vha464I CTTAAG 2 cut(s) 449, 562
VpaK11BI GGWCC 2 cut(s) 356, 383
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.