RchiOBHm_Chr1g0334351

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000597
Physical Location & Seq
Forward (+)
26517704 .. 26517922
219 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56308

Sequence Viewer

Length: 219 bp
ATGGCATTGTTTGGGGCATTTGGATGCATTCCTCTAGATTTCATTTTGCCAATGATATTCTACAATGCGGCTTTCAAGCCCTCAAAGCAAAGCCTCATATTTTGGGTTAACACATTGATAGCAGGAGTATCGTTCTTGTTGGTTGGGGTAGGGGCTGTAGCATCTGTTAGACAGATAGTTCTTGATGCTAAAACATATCGCCTATTTGCTAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

72

Amino Acids

7.89

Weight (kDa)

9.51

Isoelectric Point (pI)

19.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 1 - 55 7.9e-06 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 1 cut(s) 76
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmsI GCATC 3 cut(s) 14, 170, 175
BseGI GGATG 1 cut(s) 29
BsmI GAATGC 1 cut(s) 27
BspACI CCGC 1 cut(s) 68
BstF5I GGATG 1 cut(s) 29
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 29
CviAII CATG 1 cut(s) 214
CviJI RGCY 4 cut(s) 71, 79, 93, 155
CviKI_1 RGCY 4 cut(s) 71, 79, 93, 155
EcoT22I ATGCAT 1 cut(s) 29
FaeI CATG 1 cut(s) 217
FaiI YATR 3 cut(s) 98, 196, 215
FatI CATG 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 217
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HpaI GTTAAC 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 35, 182
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
Hsp92II CATG 1 cut(s) 217
KspAI GTTAAC 1 cut(s) 109
LpnPI CCDG 1 cut(s) 108
LweI GCATC 3 cut(s) 14, 170, 175
MaeI CTAG 1 cut(s) 35
MnlI CCTC 3 cut(s) 42, 91, 104
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 85
NlaIII CATG 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 1 cut(s) 217
PciI ACATGT 1 cut(s) 213
PctI GAATGC 1 cut(s) 27
PkrI GCNGC 1 cut(s) 70
PscI ACATGT 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 22
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 69
SfaNI GCATC 3 cut(s) 14, 170, 175
SfcI CTRYAG 1 cut(s) 156
SgeI CNNG 5 cut(s) 47, 88, 135, 148, 194
SmiMI CAYNNNNRTG 1 cut(s) 22
SsiI CCGC 1 cut(s) 68
SspMI CTAG 1 cut(s) 35
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 31
XbaI TCTAGA 1 cut(s) 34
XceI RCATGY 1 cut(s) 217
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.