Rorug05G0293200

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000597
Physical Location & Seq
Reverse (-)
33811546 .. 33817079
5534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0293200.1

Sequence Viewer

Length: 2853 bp
ATGGATCTGGCCGCAGACGAGCCGCCTAGGGTTGAGAAGAGGCCGATTCAGAACGGCGCCGGCGGAGAATTGGGGCCCCAGCTGAGCAAGAAGCCCAGATTGGGGCCCGATTGCGAGAGGGACTTGAAGAGAGTGGCGGAGATTGTGCTGGCTTTGTCGACCATGGCGAAAATTCGAGGCGGAGGGAAGCCGACGGAGCCGGAGACTGGGCTTATGGAGGAGGCGAGGGCAAAGCTGGTGGAGCTGTGCGAGGGTTTGGCGCCCAAGGAGATTGTGGCGAAGGACGCGATTTCGGCTGTGATTGAGGATTTGGGGCTTAATGCGAAGCTCAATGAACAGAGATTAGGGTTTCGGGGTCCCAAGTTGACGATTGCGGAGAAGTTTGCACTCACTAAGAGGAAGATGGATGAATCCAAGAAATACGCTGCACAAACCGCTGCATATCCATCTCAACCATTAAAAACAAGCTTCAATGTAGCAGCTGAAAACCATGGGTTGCCACATACTGTTCGTATTTCAACAGATAACCCAAACCATGCATCTATTTCAACTGGTGGTTTCGCAGCGTCTCCTCTTGTTCATGTTTCCACAGTAACTCCTACATCTGCACAGTATCAGTTGCCCACCAGCGAAATTAGAACAACTATGGTTTCTGGCAGTGTGCCTGGTAGTCATCTGGGAAGAGATTCATCTTCCCCAGCATTTCCTAGAGGTGAAAGAGTGCAATTAAGAACTGATGGAGGATCCAATGGATCTTCTTATGCATATCAAGTACAAGCAAATTCTTCGGCAAATCATCCACCGGTTAGTGCTCCAACTTGGTCTACACAAACTCAAGGTGGACCAGAAAACAAGGTGCCAAATCATACTTCTGTCAAGGTTGAAGGAACCGCTGGTATGAGTAAGCCATCAGTGACTCCTCTAGCAGCACGAGATCAGAATTCTAGGTCATTTGCCTCTCAACCATCTTCTGGACATTTGCCTGGTGGACACCAGTCTTCACAAAAGATTCGCTTTGTTCAAGCTTCTTCAGTTCCTAATAATCACGCTGAAATTGCGAGAATTATTCAGAAATTATTGCAACCACAGCTGCCTGATCATCCCACATGGATCCCTCCATCAAGGGATTACATGAGTAAGGCTTTGACTTGCCAAACTTGCCAGATTAGCATCAATGAGGTAGATAATGTTCTTATTTGTGATGCATGTGAGAAAGGATATCACATTACATGTGCACAATCACCTAACCAGAGAGGAATTCCTCGAGGTGAATGGCACTGCACAAGATGCTTGTCACTAAGCAATGGAAAGCCTTTGCCTCCTAAGTATGGGCGTGTTATGAGAAGTAATATACAATTAAAAGCCGGCACAGTCCCTTCCAGTACAGTCGCTTCCAGCACAGTCCCTTCCAGTACGGTCGCTTCCAGCACAGTCTCTTCCAGCACTGTCCCTTCCAGCATGGCTGTAGTTCAGATGTCCTCGGGGAATAAAGTGGGAGCTTTAGATCCAAAGGTCTATGAGCAGAAGATAAATGCACATGTAAGCTCTGTTTTCCAGAATCCTGCTCATTTGGTTGGTGTGGGCACAAACAATATTAAGTCGGCAACAGATTCAAAAGTTTCATTTGCAAGAGAAATGCAAGGGAATAATTTACCATCCAGCAGTGTAAATACGGATGAGAAACCTCTTTCTGGAAGTTTCCTGTTAAGTGAAACATCATCTCAACAAATAGGTAATTCTGAATTATCTACATCGGACAAGAGACCTATGGAATCAAGAGCAGAACCTTCTTCTGATTTGTCAAACAAAGATGCTGATCCCAAGATTTCAACTGCAAGTGAAACTGAAGGGACTAATTTTCCATCAAGCAGTAAAACTACGGATGAGAAAATTCTTTCTGGAAGTTTCCAGTCTGGTGAAAGGACATCTCAACAGAGAGATATTTCTGAATCATCCAAATCTGACAAGAGACCTTCTGAATCAAGAGCAGAATCACCTACTGATTTACCCAACAAAGATTCTGATCCAAATATTTTAAGTGCAACAGAGACACAAGGGAATAATTTCCCATCAAGCAGTCAAAGTACAGATGAGAAACCTCTTTCTGGAAGTTTCATGTCTAGTGAAAGATCCTCTCGAGAAATAGATAATTCTGAATCATCTAGACTATTTGAATCAAGCACAGAGCCTCCTGCTGATTTATCCAACAAAAATGCTGATTCAAAAATTTCAAATGCAAGAGAAATGCAAGGAGCTCCAAACTGTGGAGAAAATTCTAGCTGTTCTATCAGAGATGACCAAGGTCTTGCGCAAGAAAATACTAGTGAAAGTCGTGTAGTCAGTGGTGGGACACTAGAGCATACTGGATTTACTTCTGATGGCTTGCGACCTGTTGAATGGATCAGTGATTCAATTCAAGTTGTCAGTGAAAAAAACTTCTATCGTTCTTGTCGCATTGATGGAGTAACATATGAGCTACAAGAACATGCTCTCTTCCAGTCTAGTCATGGAAAATTGATACCCTCTAAGCTTCAGTCAATGTGGGAGGATAGGAAAACTGGGTTAAAGTGGGTTATAGTTAACAGTTGCTACTTTCCTAGTGACTTACCAGAGCATGTTAGTCGTCCATCTACACCTGAAAGTAATGAGGTGTACGAATCTAATCATGAAACAACTGTAATGGCGGGCTTAATTCAAGGTCCATGTGAAGTTCTTCCTCCTGCTAAGTTCAGTGAAGAAATTGAAAGACGGAGCCAAGTAGGACATGATACAAATGATGAACTACGACCAGTTTTCCTGTGCAAATGGAATTATGATGAGTTCAAAGGGTTATTGCAGACTGTTTCCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

950

Amino Acids

102.44

Weight (kDa)

6.15

Isoelectric Point (pI)

53.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7797 PF25073 29 - 85 1e-22 Domain of unknown function (DUF7797)
PHD PF00628 384 - 430 2e-06 PHD-finger
BAH PF01426 843 - 943 1.3e-08 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1263
Acc16I TGCGCA 1 cut(s) 2310
AccB1I GGYRCC 3 cut(s) 56, 259, 856
AccB7I CCANNNNNTGG 2 cut(s) 971, 2264
AccI GTMKAC 2 cut(s) 158, 824
AccII CGCG 1 cut(s) 287
AciI CCGC 9 cut(s) 12, 23, 63, 137, 180, 374, 435, 891, 2684
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 7 cut(s) 171, 781, 940, 1257, 1890, 2226, 2272
AcuI CTGAAG 3 cut(s) 1014, 1866, 2516
AcyI GRCGYC 2 cut(s) 57, 260
AfaI GTAC 5 cut(s) 774, 1384, 1414, 2086, 2654
AfiI CCNNNNNNNGG 8 cut(s) 101, 102, 206, 971, 1328, 1691, 2105, 2264
AflIII ACRYGT 2 cut(s) 1229, 1537
AgeI ACCGGT 1 cut(s) 802
AhlI ACTAGT 1 cut(s) 2321
AjnI CCWGG 2 cut(s) 664, 982
AjuI GAANNNNNNNTTGG 4 cut(s) 83, 115, 853, 885
Alw21I GWGCWC 3 cut(s) 814, 1237, 2257
Alw26I GTCTC 6 cut(s) 197, 573, 1438, 1756, 1963, 2042
Alw44I GTGCAC 1 cut(s) 1233
Ama87I CYCGRG 3 cut(s) 1263, 1480, 2136
AoxI GGCC 4 cut(s) 9, 41, 74, 104
ApaI GGGCCC 2 cut(s) 78, 108
ApaLI GTGCAC 1 cut(s) 1233
ApeKI GCWGC 6 cut(s) 425, 437, 479, 563, 926, 1090
ApoI RAATTY 7 cut(s) 171, 781, 940, 1257, 1890, 2226, 2272
AsiGI ACCGGT 1 cut(s) 802
Asp700I GAANNNNTTC 3 cut(s) 685, 2063, 2712
AspA2I CCTAGG 1 cut(s) 26
AspLEI GCGC 3 cut(s) 59, 262, 2311
AspS9I GGNCC 7 cut(s) 74, 75, 104, 105, 356, 842, 2699
AsuHPI GGTGA 5 cut(s) 725, 1233, 1280, 1928, 1986
AvaI CYCGRG 3 cut(s) 1263, 1480, 2136
AvaII GGWCC 3 cut(s) 356, 842, 2699
AvrII CCTAGG 1 cut(s) 26
BaeGI GKGCMC 4 cut(s) 78, 108, 1237, 1586
BamHI GGATCC 2 cut(s) 743, 1110
BanI GGYRCC 3 cut(s) 56, 259, 856
BanII GRGCYC 3 cut(s) 78, 108, 2257
BarI GAAGNNNNNNTAC 4 cut(s) 1375, 1405, 1407, 1437
BauI CACGAG 1 cut(s) 930
BbsI GAAGAC 1 cut(s) 990
Bbv12I GWGCWC 3 cut(s) 814, 1237, 2257
BbvI GCAGC 6 cut(s) 412, 424, 491, 575, 938, 1077
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 4 cut(s) 768, 802, 2603, 2637
BciT130I CCWGG 2 cut(s) 666, 984
BclI TGATCA 1 cut(s) 1096
BcoDI GTCTC 6 cut(s) 197, 573, 1438, 1756, 1963, 2042
BcuI ACTAGT 1 cut(s) 2321
BfmI CTRYAG 1 cut(s) 1464
BfoI RGCGCY 2 cut(s) 60, 263
BisI GCNGC 8 cut(s) 12, 23, 426, 438, 480, 564, 927, 1091
BlnI CCTAGG 1 cut(s) 26
BlpI GCTNAGC 1 cut(s) 83
BlsI GCNGC 8 cut(s) 13, 24, 427, 439, 481, 565, 928, 1092
Bme1390I CCNGG 2 cut(s) 666, 984
Bme18I GGWCC 3 cut(s) 356, 842, 2699
BmeT110I CYCGRG 3 cut(s) 1263, 1480, 2136
BmgT120I GGNCC 7 cut(s) 74, 75, 104, 105, 356, 842, 2699
BmrFI CCNGG 2 cut(s) 666, 984
BmrI ACTGGG 2 cut(s) 216, 2568
BmsI GCATC 5 cut(s) 548, 1179, 1192, 1277, 1801
BmuI ACTGGG 2 cut(s) 216, 2568
BoxI GACNNNNGTC 2 cut(s) 994, 2301
BpiI GAAGAC 1 cut(s) 990
Bpu1102I GCTNAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 819
BsaBI GATNNNNATC 3 cut(s) 1169, 1815, 2022
BsaHI GRCGYC 2 cut(s) 57, 260
BsaI GGTCTC 2 cut(s) 1756, 1963
BsaJI CCNNGG 6 cut(s) 26, 162, 264, 490, 1479, 2299
BsaWI WCCGGW 1 cut(s) 802
BsaXI ACNNNNNCTCC 4 cut(s) 580, 610, 2173, 2203
Bsc4I CCNNNNNNNGG 8 cut(s) 101, 102, 206, 971, 1328, 1691, 2105, 2264
Bse118I RCCGGY 3 cut(s) 59, 802, 1364
Bse3DI GCAATG 1 cut(s) 1309
Bse8I GATNNNNATC 3 cut(s) 1169, 1815, 2022
BseBI CCWGG 2 cut(s) 666, 984
BseDI CCNNGG 6 cut(s) 26, 162, 264, 490, 1479, 2299
BseGI GGATG 7 cut(s) 412, 796, 1099, 1655, 1681, 1888, 1952
BseJI GATNNNNATC 3 cut(s) 1169, 1815, 2022
BseLI CCNNNNNNNGG 8 cut(s) 101, 102, 206, 971, 1328, 1691, 2105, 2264
BseMI GCAATG 1 cut(s) 1309
BseMII CTCAG 1 cut(s) 74
BseRI GAGGAG 3 cut(s) 233, 561, 909
BseSI GKGCMC 4 cut(s) 78, 108, 1237, 1586
BseXI GCAGC 6 cut(s) 412, 424, 491, 575, 938, 1077
BseYI CCCAGC 2 cut(s) 78, 697
BsgI GTGCAG 3 cut(s) 411, 591, 1264
Bsh1236I CGCG 1 cut(s) 287
Bsh1285I CGRYCG 1 cut(s) 1419
BshFI GGCC 4 cut(s) 11, 43, 76, 106
BshNI GGYRCC 3 cut(s) 56, 259, 856
BshTI ACCGGT 1 cut(s) 802
BsiEI CGRYCG 1 cut(s) 1419
BsiHKAI GWGCWC 3 cut(s) 814, 1237, 2257
BsiHKCI CYCGRG 3 cut(s) 1263, 1480, 2136
BsiSI CCGG 4 cut(s) 60, 200, 803, 1365
BslFI GGGAC 7 cut(s) 134, 342, 1358, 1388, 1433, 1864, 2362
BslI CCNNNNNNNGG 8 cut(s) 101, 102, 206, 971, 1328, 1691, 2105, 2264
BsmAI GTCTC 6 cut(s) 197, 573, 1438, 1756, 1963, 2042
BsmBI CGTCTC 1 cut(s) 573
BsmFI GGGAC 7 cut(s) 134, 342, 1358, 1388, 1433, 1864, 2362
BsnI GGCC 4 cut(s) 11, 43, 76, 106
Bso31I GGTCTC 2 cut(s) 1756, 1963
BsoBI CYCGRG 3 cut(s) 1263, 1480, 2136
Bsp120I GGGCCC 2 cut(s) 74, 104
Bsp1286I GDGCHC 6 cut(s) 78, 108, 814, 1237, 1586, 2257
Bsp1720I GCTNAGC 1 cut(s) 83
Bsp19I CCATGG 2 cut(s) 162, 490
BspACI CCGC 9 cut(s) 12, 23, 63, 137, 180, 374, 435, 891, 2684
BspANI GGCC 4 cut(s) 11, 43, 76, 106
BspCNI CTCAG 1 cut(s) 75
BspFNI CGCG 1 cut(s) 287
BspHI TCATGA 1 cut(s) 2665
BspT107I GGYRCC 3 cut(s) 56, 259, 856
BspTNI GGTCTC 2 cut(s) 1756, 1963
BsrDI GCAATG 1 cut(s) 1309
BsrFI RCCGGY 3 cut(s) 59, 802, 1364
BssAI RCCGGY 3 cut(s) 59, 802, 1364
BssECI CCNNGG 6 cut(s) 26, 162, 264, 490, 1479, 2299
BssNI GRCGYC 2 cut(s) 57, 260
BssSI CACGAG 1 cut(s) 930
BssT1I CCWWGG 5 cut(s) 26, 162, 264, 490, 2299
Bst2BI CACGAG 1 cut(s) 930
Bst2UI CCWGG 2 cut(s) 666, 984
Bst6I CTCTTC 5 cut(s) 32, 122, 676, 1441, 2498
BstACI GRCGYC 2 cut(s) 57, 260
BstAPI GCANNNNNTGC 1 cut(s) 1287
BstC8I GCNNGC 5 cut(s) 61, 150, 1366, 2384, 2686
BstDEI CTNAG 6 cut(s) 83, 393, 1298, 1323, 2526, 2724
BstDSI CCRYGG 2 cut(s) 162, 490
BstF5I GGATG 7 cut(s) 412, 796, 1099, 1655, 1681, 1888, 1952
BstFNI CGCG 1 cut(s) 287
BstH2I RGCGCY 2 cut(s) 60, 263
BstHHI GCGC 3 cut(s) 59, 262, 2311
BstMAI GTCTC 6 cut(s) 197, 573, 1438, 1756, 1963, 2042
BstMCI CGRYCG 1 cut(s) 1419
BstNI CCWGG 2 cut(s) 666, 984
BstNSI RCATGY 5 cut(s) 1209, 1233, 1541, 2489, 2618
BstPAI GACNNNNGTC 2 cut(s) 994, 2301
BstSCI CCNGG 2 cut(s) 664, 982
BstSFI CTRYAG 1 cut(s) 1464
BstSLI GKGCMC 4 cut(s) 78, 108, 1237, 1586
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 6 cut(s) 412, 424, 491, 575, 938, 1077
BstV2I GAAGAC 1 cut(s) 990
BstX2I RGATCY 6 cut(s) 4, 743, 752, 1110, 1504, 2129
BstYI RGATCY 6 cut(s) 4, 743, 752, 1110, 1504, 2129
BsuRI GGCC 4 cut(s) 11, 43, 76, 106
BtgI CCRYGG 2 cut(s) 162, 490
BtsCI GGATG 7 cut(s) 412, 796, 1099, 1655, 1681, 1888, 1952
BtsI GCAGTG 3 cut(s) 664, 1276, 1669
BtsIMutI CAGTG 9 cut(s) 664, 918, 1276, 1443, 1669, 2347, 2410, 2431, 2737
Cac8I GCNNGC 5 cut(s) 61, 150, 1366, 2384, 2686
CciI TCATGA 1 cut(s) 2665
CfoI GCGC 3 cut(s) 59, 262, 2311
Cfr10I RCCGGY 3 cut(s) 59, 802, 1364
Cfr13I GGNCC 7 cut(s) 74, 75, 104, 105, 356, 842, 2699
CseI GACGC 2 cut(s) 293, 555
Csp6I GTAC 5 cut(s) 773, 1383, 1413, 2085, 2653
CspAI ACCGGT 1 cut(s) 802
CspCI CAANNNNNGTGG 2 cut(s) 219, 254
CviQI GTAC 5 cut(s) 773, 1383, 1413, 2085, 2653
DdeI CTNAG 6 cut(s) 83, 393, 1298, 1323, 2526, 2724
DinI GGCGCC 2 cut(s) 58, 261
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 5 cut(s) 32, 122, 676, 1441, 2498
EarI CTCTTC 5 cut(s) 32, 122, 676, 1441, 2498
EciI GGCGGA 3 cut(s) 78, 152, 195
Ecl136II GAGCTC 1 cut(s) 2255
Eco130I CCWWGG 5 cut(s) 26, 162, 264, 490, 2299
Eco24I GRGCYC 3 cut(s) 78, 108, 2257
Eco31I GGTCTC 2 cut(s) 1756, 1963
Eco32I GATATC 1 cut(s) 1220
Eco47I GGWCC 3 cut(s) 356, 842, 2699
Eco53kI GAGCTC 1 cut(s) 2255
Eco57I CTGAAG 3 cut(s) 1014, 1866, 2516
Eco88I CYCGRG 3 cut(s) 1263, 1480, 2136
EcoICRI GAGCTC 1 cut(s) 2255
EcoO109I RGGNCCY 4 cut(s) 74, 75, 104, 356
EcoRI GAATTC 2 cut(s) 940, 1257
EcoRII CCWGG 2 cut(s) 664, 982
EcoRV GATATC 1 cut(s) 1220
EcoT14I CCWWGG 5 cut(s) 26, 162, 264, 490, 2299
EcoT22I ATGCAT 3 cut(s) 541, 766, 1207
EcoT38I GRGCYC 3 cut(s) 78, 108, 2257
EgeI GGCGCC 2 cut(s) 58, 261
EheI GGCGCC 2 cut(s) 58, 261
ErhI CCWWGG 5 cut(s) 26, 162, 264, 490, 2299
Esp3I CGTCTC 1 cut(s) 573
FalI AAGNNNNNCTT 2 cut(s) 998, 1030
FaqI GGGAC 7 cut(s) 134, 342, 1358, 1388, 1433, 1864, 2362
FauI CCCGC 1 cut(s) 2677
FauNDI CATATG 1 cut(s) 2470
FbaI TGATCA 1 cut(s) 1096
FblI GTMKAC 2 cut(s) 158, 824
Fnu4HI GCNGC 8 cut(s) 12, 23, 426, 438, 480, 564, 927, 1091
FokI GGATG 7 cut(s) 419, 783, 1086, 1642, 1688, 1895, 1939
FriOI GRGCYC 3 cut(s) 78, 108, 2257
Fsp4HI GCNGC 8 cut(s) 12, 23, 426, 438, 480, 564, 927, 1091
FspI TGCGCA 1 cut(s) 2310
GlaI GCGC 3 cut(s) 58, 261, 2310
GluI GCNGC 8 cut(s) 12, 23, 426, 438, 480, 564, 927, 1091
GsaI CCCAGC 2 cut(s) 82, 701
HaeII RGCGCY 2 cut(s) 60, 263
HaeIII GGCC 4 cut(s) 11, 43, 76, 106
HapII CCGG 4 cut(s) 60, 200, 803, 1365
HgaI GACGC 2 cut(s) 293, 555
HhaI GCGC 3 cut(s) 59, 262, 2311
Hin1I GRCGYC 2 cut(s) 57, 260
Hin6I GCGC 3 cut(s) 57, 260, 2309
HinP1I GCGC 3 cut(s) 57, 260, 2309
HincII GTYRAC 3 cut(s) 159, 366, 2581
HindII GTYRAC 3 cut(s) 159, 366, 2581
HindIII AAGCTT 3 cut(s) 466, 1023, 2528
HpaI GTTAAC 1 cut(s) 2581
HpaII CCGG 4 cut(s) 60, 200, 803, 1365
HphI GGTGA 5 cut(s) 725, 1233, 1280, 1928, 1986
Hpy166II GTNNAC 8 cut(s) 159, 366, 825, 842, 989, 1235, 2581, 2653
Hpy8I GTNNAC 8 cut(s) 159, 366, 825, 842, 989, 1235, 2581, 2653
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 8 cut(s) 274, 878, 1386, 1416, 1461, 1797, 1841, 1983
HpyF3I CTNAG 6 cut(s) 83, 393, 1298, 1323, 2526, 2724
Hsp92I GRCGYC 2 cut(s) 57, 260
HspAI GCGC 3 cut(s) 57, 260, 2309
KasI GGCGCC 2 cut(s) 56, 259
KflI GGGWCCC 1 cut(s) 356
KroI GCCGGC 2 cut(s) 59, 1364
KroNI GCCGGC 2 cut(s) 61, 1366
Ksp22I TGATCA 1 cut(s) 1096
KspAI GTTAAC 1 cut(s) 2581
LmnI GCTCC 7 cut(s) 196, 241, 817, 1496, 2252, 2260, 2751
Lsp1109I GCAGC 6 cut(s) 412, 424, 491, 575, 938, 1077
LweI GCATC 5 cut(s) 548, 1179, 1192, 1277, 1801
MaeIII GTNAC 5 cut(s) 592, 913, 1293, 2464, 2600
MflI RGATCY 6 cut(s) 4, 743, 752, 1110, 1504, 2129
MhlI GDGCHC 6 cut(s) 78, 108, 814, 1237, 1586, 2257
Mly113I GGCGCC 2 cut(s) 57, 260
MlyI GAGTC 1 cut(s) 910
MmeI TCCRAC 2 cut(s) 839, 2229
Mph1103I ATGCAT 3 cut(s) 541, 766, 1207
MreI CGCCGGCG 1 cut(s) 59
MroNI GCCGGC 2 cut(s) 59, 1364
MroXI GAANNNNTTC 3 cut(s) 685, 2063, 2712
MspA1I CMGCKG 5 cut(s) 82, 437, 482, 893, 1090
MspI CCGG 4 cut(s) 60, 200, 803, 1365
MspR9I CCNGG 2 cut(s) 666, 984
MvaI CCWGG 2 cut(s) 666, 984
MvnI CGCG 1 cut(s) 287
NaeI GCCGGC 2 cut(s) 61, 1366
NarI GGCGCC 2 cut(s) 57, 260
NcoI CCATGG 2 cut(s) 162, 490
NdeI CATATG 1 cut(s) 2470
NgoMIV GCCGGC 2 cut(s) 59, 1364
NmuCI GTSAC 3 cut(s) 913, 1293, 2600
NsbI TGCGCA 1 cut(s) 2310
NsiI ATGCAT 3 cut(s) 541, 766, 1207
NspI RCATGY 5 cut(s) 1209, 1233, 1541, 2489, 2618
PaeR7I CTCGAG 2 cut(s) 1263, 2136
PagI TCATGA 1 cut(s) 2665
PciI ACATGT 2 cut(s) 1229, 1537
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PdiI GCCGGC 2 cut(s) 61, 1366
PdmI GAANNNNTTC 3 cut(s) 685, 2063, 2712
PflMI CCANNNNNTGG 2 cut(s) 971, 2264
PinAI ACCGGT 1 cut(s) 802
PkrI GCNGC 8 cut(s) 13, 24, 427, 439, 481, 565, 928, 1092
PleI GAGTC 1 cut(s) 910
PluTI GGCGCC 2 cut(s) 60, 263
PpsI GAGTC 1 cut(s) 910
PpuMI RGGWCCY 1 cut(s) 356
PscI ACATGT 2 cut(s) 1229, 1537
PshAI GACNNNNGTC 2 cut(s) 994, 2301
Psp124BI GAGCTC 1 cut(s) 2257
Psp5II RGGWCCY 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 664, 982
PspFI CCCAGC 2 cut(s) 78, 697
PspGI CCWGG 2 cut(s) 664, 982
PspOMI GGGCCC 2 cut(s) 74, 104
PspPI GGNCC 7 cut(s) 74, 75, 104, 105, 356, 842, 2699
PspPPI RGGWCCY 1 cut(s) 356
PspXI VCTCGAGB 1 cut(s) 1263
PsrI GAACNNNNNNTAC 2 cut(s) 1173, 1205
PsuI RGATCY 6 cut(s) 4, 743, 752, 1110, 1504, 2129
PvuII CAGCTG 3 cut(s) 82, 482, 1090
RsaI GTAC 5 cut(s) 774, 1384, 1414, 2086, 2654
RsaNI GTAC 5 cut(s) 773, 1383, 1413, 2085, 2653
SacI GAGCTC 1 cut(s) 2257
SalI GTCGAC 1 cut(s) 157
SatI GCNGC 8 cut(s) 12, 23, 426, 438, 480, 564, 927, 1091
Sau96I GGNCC 7 cut(s) 74, 75, 104, 105, 356, 842, 2699
SchI GAGTC 1 cut(s) 910
ScrFI CCNGG 2 cut(s) 666, 984
SduI GDGCHC 6 cut(s) 78, 108, 814, 1237, 1586, 2257
SfaNI GCATC 5 cut(s) 548, 1179, 1192, 1277, 1801
SfcI CTRYAG 1 cut(s) 1464
SfoI GGCGCC 2 cut(s) 58, 261
Sfr274I CTCGAG 2 cut(s) 1263, 2136
SgrAI CRCCGGYG 1 cut(s) 59
SinI GGWCC 3 cut(s) 356, 842, 2699
SlaI CTCGAG 2 cut(s) 1263, 2136
SmlI CTYRAG 3 cut(s) 834, 1263, 2136
SmoI CTYRAG 3 cut(s) 834, 1263, 2136
SpeI ACTAGT 1 cut(s) 2321
SsiI CCGC 9 cut(s) 12, 23, 63, 137, 180, 374, 435, 891, 2684
SspDI GGCGCC 2 cut(s) 56, 259
SspI AATATT 2 cut(s) 1594, 2032
SstI GAGCTC 1 cut(s) 2257
StyD4I CCNGG 2 cut(s) 664, 982
StyI CCWWGG 5 cut(s) 26, 162, 264, 490, 2299
TaqI TCGA 4 cut(s) 158, 175, 1264, 2137
TatI WGTACW 3 cut(s) 772, 1382, 2084
TauI GCSGC 2 cut(s) 14, 25
TscAI CASTG 9 cut(s) 664, 918, 1283, 1450, 1669, 2347, 2410, 2431, 2737
TseFI GTSAC 3 cut(s) 913, 1293, 2600
TseI GCWGC 6 cut(s) 425, 437, 479, 563, 926, 1090
Tsp45I GTSAC 3 cut(s) 913, 1293, 2600
TspDTI ATGAA 8 cut(s) 348, 423, 569, 678, 1611, 2104, 2682, 2793
TspGWI ACGGA 4 cut(s) 209, 1688, 1895, 2764
TspRI CASTG 9 cut(s) 664, 918, 1283, 1450, 1669, 2347, 2410, 2431, 2737
Van91I CCANNNNNTGG 2 cut(s) 971, 2264
VneI GTGCAC 1 cut(s) 1233
VpaK11BI GGWCC 3 cut(s) 356, 842, 2699
XapI RAATTY 7 cut(s) 171, 781, 940, 1257, 1890, 2226, 2272
XbaI TCTAGA 1 cut(s) 2162
XceI RCATGY 5 cut(s) 1209, 1233, 1541, 2489, 2618
XcmI CCANNNNNNNNNTGG 2 cut(s) 271, 2504
XhoI CTCGAG 2 cut(s) 1263, 2136
XmaJI CCTAGG 1 cut(s) 26
XmiI GTMKAC 2 cut(s) 158, 824
XmnI GAANNNNTTC 3 cut(s) 685, 2063, 2712
Zsp2I ATGCAT 3 cut(s) 541, 766, 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.