Rh5CG396900

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000597
Physical Location & Seq
Forward (+)
52656707 .. 52666000
9294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG396900.1

Sequence Viewer

Length: 1017 bp
ATGGGGACTCTGGCACCAAACTCCATTGCAGCAGAAGCACACGATCGTAATCAAGATCAAGTAGTAGATGGTAATCATGCCAAGGTTGGTCAAGATGATGATGACCAACAGAACCAACTGGATGCCGGTGCCAAGTTTGTTCTTAAATCCAAAGGATCATGGGTGCACTGTGGTTATCATTTGACTACTTCAATAGTTGCTCCACCTCTGCTAAGTCTACCGTACGCTTTCACATTCCTCGGATGGACGGGCGGAGTTATTTGTCTCGTGATCGGAGCATTAGTAACTTTCTACTCGTACAACTTAATCTCTCTGGTGCTCGAGCATTATGCTCAATTGGGCCATCGCCAACTTCGCTTCAGAGACATGGCTCGTGACATTTTAGGACCCAAATGGGGTCGCTATTTCGTTGGTCCAATTCAGTTTATGGTATGCTATGGTGCTGTTGTGGCTTGTACTCTTTTGGGAGGGCAATGCATGAAGGCAGTTTACATGCTGACAAACCCAAATGGGAGCATGAAGCTGTATGAGTTTGTGATCATATTTGGATGCTTCATGCTGATTTTGGCCCAAATCCCATCTTTTCACTCACTACGGCACATCAACCTTGTCTCCATGATCCTTTGCCTAGCCTATAGTGTTTGTGCTACTGCTGCTTGCATCTATATTGGAAATTCTTCAAAAGGGCCACCCAAGGACTATTCTTTGAAGGGCAACACCGAGAATCAGATTTTTGGGATCTTTAATGCCAATGCCATCATTGCTACGACATACGGCAATGGTATCATTCCAGAAATTCAGACTCAATGCCATTCTTTGAGGAAAAAGGTTCAGTTGGATAAAAATCAGCAATGCCGAAAGAGCTTTGTGTTATTTAAACATGGAACGATTGATTCTGTCAATACTGATATCAGATATGGGTTCAATGGGTTGATCATCATTGGCAATTCGAGCAGAGCTTACAGGATCTCTACTAAATTCATCTGCATAAGTGAATCAAATCAGCTGAAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

338

Amino Acids

37.32

Weight (kDa)

8.93

Isoelectric Point (pI)

24.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 51 - 276 3.3e-36 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 13, 128
AccI GTMKAC 1 cut(s) 217
AciI CCGC 1 cut(s) 252
AclWI GGATC 4 cut(s) 163, 613, 746, 974
AcsI RAATTY 3 cut(s) 673, 795, 977
AcuI CTGAAG 1 cut(s) 343
AfaI GTAC 3 cut(s) 224, 299, 457
AfiI CCNNNNNNNGG 1 cut(s) 395
AgsI TTSAA 4 cut(s) 192, 681, 709, 925
AluBI AGCT 4 cut(s) 523, 864, 959, 1006
AluI AGCT 4 cut(s) 523, 864, 959, 1006
Alw21I GWGCWC 2 cut(s) 168, 321
Alw26I GTCTC 3 cut(s) 269, 357, 616
Alw44I GTGCAC 1 cut(s) 164
AlwI GGATC 4 cut(s) 163, 613, 746, 974
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 3 cut(s) 340, 567, 686
ApaLI GTGCAC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 29, 653
ApoI RAATTY 3 cut(s) 673, 795, 977
Asp700I GAANNNNTTC 1 cut(s) 676
AspS9I GGNCC 5 cut(s) 340, 386, 413, 568, 686
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 2 cut(s) 386, 413
BaeGI GKGCMC 1 cut(s) 168
BanI GGYRCC 2 cut(s) 13, 128
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
BauI CACGAG 2 cut(s) 266, 372
Bbv12I GWGCWC 2 cut(s) 168, 321
BbvI GCAGC 2 cut(s) 41, 640
BccI CCATC 5 cut(s) 62, 237, 351, 586, 764
BceAI ACGGC 2 cut(s) 611, 790
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BclI TGATCA 2 cut(s) 537, 933
BcoDI GTCTC 3 cut(s) 269, 357, 616
BfaI CTAG 1 cut(s) 629
BfmI CTRYAG 1 cut(s) 634
BisI GCNGC 2 cut(s) 30, 654
BlsI GCNGC 2 cut(s) 31, 655
Bme18I GGWCC 2 cut(s) 386, 413
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 5 cut(s) 340, 386, 413, 568, 686
BmiI GGNNCC 3 cut(s) 15, 130, 388
BmsI GCATC 3 cut(s) 112, 539, 669
BsaBI GATNNNNATC 3 cut(s) 48, 72, 843
BsaJI CCNNGG 3 cut(s) 81, 238, 693
BsaXI ACNNNNNCTCC 4 cut(s) 267, 297, 596, 626
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 5 cut(s) 24, 479, 759, 784, 857
Bse8I GATNNNNATC 3 cut(s) 48, 72, 843
BseDI CCNNGG 3 cut(s) 81, 238, 693
BseGI GGATG 3 cut(s) 127, 248, 554
BseJI GATNNNNATC 3 cut(s) 48, 72, 843
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMI GCAATG 5 cut(s) 24, 479, 759, 784, 857
BseNI ACTGG 1 cut(s) 123
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 2 cut(s) 41, 640
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 3 cut(s) 342, 569, 688
BshNI GGYRCC 2 cut(s) 13, 128
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 168, 321
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 126
BsiWI CGTACG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 3 cut(s) 269, 357, 616
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 3 cut(s) 342, 569, 688
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 168, 321
Bsp143I GATC 9 cut(s) 43, 55, 155, 270, 537, 618, 738, 933, 966
BspACI CCGC 1 cut(s) 252
BspANI GGCC 3 cut(s) 342, 569, 688
BspLI GGNNCC 3 cut(s) 15, 130, 388
BspPI GGATC 4 cut(s) 163, 613, 746, 974
BspT107I GGYRCC 2 cut(s) 13, 128
BsrDI GCAATG 5 cut(s) 24, 479, 759, 784, 857
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 3 cut(s) 81, 238, 693
BssMI GATC 9 cut(s) 43, 55, 155, 270, 537, 618, 738, 933, 966
BssSI CACGAG 2 cut(s) 266, 372
BssT1I CCWWGG 2 cut(s) 81, 693
Bst2BI CACGAG 2 cut(s) 266, 372
Bst4CI ACNGT 2 cut(s) 170, 222
BstC8I GCNNGC 1 cut(s) 658
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 3 cut(s) 127, 248, 554
BstKTI GATC 9 cut(s) 46, 58, 158, 273, 540, 621, 741, 936, 969
BstMAI GTCTC 3 cut(s) 269, 357, 616
BstMBI GATC 9 cut(s) 43, 55, 155, 270, 537, 618, 738, 933, 966
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 7 cut(s) 35, 354, 449, 653, 761, 861, 951
BstNSI RCATGY 1 cut(s) 496
BstSFI CTRYAG 1 cut(s) 634
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 41, 640
BstX2I RGATCY 2 cut(s) 738, 966
BstYI RGATCY 2 cut(s) 738, 966
BsuRI GGCC 3 cut(s) 342, 569, 688
BtgZI GCGATG 1 cut(s) 329
BtsCI GGATG 3 cut(s) 127, 248, 554
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 658
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 5 cut(s) 340, 386, 413, 568, 686
Csp6I GTAC 3 cut(s) 223, 298, 456
CviAII CATG 9 cut(s) 77, 159, 367, 478, 493, 517, 556, 616, 881
CviQI GTAC 3 cut(s) 223, 298, 456
DdeI CTNAG 1 cut(s) 212
DpnI GATC 9 cut(s) 45, 57, 157, 272, 539, 620, 740, 935, 968
DpnII GATC 9 cut(s) 43, 55, 155, 270, 537, 618, 738, 933, 966
DraI TTTAAA 1 cut(s) 877
EciI GGCGGA 1 cut(s) 267
Eco130I CCWWGG 2 cut(s) 81, 693
Eco32I GATATC 1 cut(s) 910
Eco47I GGWCC 2 cut(s) 386, 413
Eco57I CTGAAG 1 cut(s) 343
Eco88I CYCGRG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 386
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 2 cut(s) 81, 693
EcoT22I ATGCAT 1 cut(s) 479
ErhI CCWWGG 2 cut(s) 81, 693
FaeI CATG 9 cut(s) 80, 162, 370, 481, 496, 520, 559, 619, 884
FaqI GGGAC 1 cut(s) 19
FatI CATG 9 cut(s) 76, 158, 366, 477, 492, 516, 555, 615, 880
FbaI TGATCA 2 cut(s) 537, 933
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 30, 654
FokI GGATG 3 cut(s) 134, 255, 561
Fsp4HI GCNGC 2 cut(s) 30, 654
FspBI CTAG 1 cut(s) 629
GluI GCNGC 2 cut(s) 30, 654
HaeIII GGCC 3 cut(s) 342, 569, 688
HapII CCGG 1 cut(s) 126
Hin1II CATG 9 cut(s) 80, 162, 370, 481, 496, 520, 559, 619, 884
HinfI GANTC 5 cut(s) 7, 724, 802, 893, 995
HpaII CCGG 1 cut(s) 126
Hpy166II GTNNAC 3 cut(s) 166, 218, 490
Hpy188I TCNGA 6 cut(s) 242, 275, 362, 729, 801, 914
Hpy188III TCNNGA 5 cut(s) 53, 92, 268, 374, 791
Hpy8I GTNNAC 3 cut(s) 166, 218, 490
HpyAV CCTTC 2 cut(s) 475, 703
HpyCH4III ACNGT 2 cut(s) 170, 222
HpyCH4V TGCA 5 cut(s) 29, 166, 477, 660, 987
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 354, 449, 653, 761, 861, 951
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 9 cut(s) 80, 162, 370, 481, 496, 520, 559, 619, 884
Ksp22I TGATCA 2 cut(s) 537, 933
Kzo9I GATC 9 cut(s) 43, 55, 155, 270, 537, 618, 738, 933, 966
LmnI GCTCC 3 cut(s) 205, 275, 513
LpnPI CCDG 5 cut(s) 104, 139, 299, 804, 949
Lsp1109I GCAGC 2 cut(s) 41, 640
LweI GCATC 3 cut(s) 112, 539, 669
MaeI CTAG 1 cut(s) 629
MaeIII GTNAC 2 cut(s) 283, 374
MalI GATC 9 cut(s) 45, 57, 157, 272, 539, 620, 740, 935, 968
MboI GATC 9 cut(s) 43, 55, 155, 270, 537, 618, 738, 933, 966
MboII GAAGA 1 cut(s) 669
MfeI CAATTG 1 cut(s) 335
MflI RGATCY 2 cut(s) 738, 966
MhlI GDGCHC 2 cut(s) 168, 321
MluCI AATT 6 cut(s) 335, 417, 673, 795, 946, 977
MlyI GAGTC 1 cut(s) 796
MmeI TCCRAC 1 cut(s) 816
MnlI CCTC 4 cut(s) 216, 248, 461, 813
Mph1103I ATGCAT 1 cut(s) 479
MroXI GAANNNNTTC 1 cut(s) 676
MseI TTAA 4 cut(s) 144, 305, 744, 876
MspA1I CMGCKG 1 cut(s) 1006
MspI CCGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 335
MwoI GCNNNNNNNGC 7 cut(s) 35, 354, 449, 653, 761, 861, 951
NdeII GATC 9 cut(s) 43, 55, 155, 270, 537, 618, 738, 933, 966
NlaIII CATG 9 cut(s) 80, 162, 370, 481, 496, 520, 559, 619, 884
NlaIV GGNNCC 3 cut(s) 15, 130, 388
NmuCI GTSAC 1 cut(s) 374
NsiI ATGCAT 1 cut(s) 479
NspI RCATGY 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 676
PfeI GAWTC 3 cut(s) 724, 893, 995
Pfl23II CGTACG 1 cut(s) 222
PkrI GCNGC 2 cut(s) 31, 655
Ple19I CGATCG 1 cut(s) 46
PleI GAGTC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 796
PpuMI RGGWCCY 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 386
PspLI CGTACG 1 cut(s) 222
PspN4I GGNNCC 3 cut(s) 15, 130, 388
PspPI GGNCC 5 cut(s) 340, 386, 413, 568, 686
PspPPI RGGWCCY 1 cut(s) 386
PspXI VCTCGAGB 1 cut(s) 320
PsuI RGATCY 2 cut(s) 738, 966
PvuI CGATCG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 1006
RsaI GTAC 3 cut(s) 224, 299, 457
RsaNI GTAC 3 cut(s) 223, 298, 456
SaqAI TTAA 4 cut(s) 144, 305, 744, 876
SatI GCNGC 2 cut(s) 30, 654
Sau3AI GATC 9 cut(s) 43, 55, 155, 270, 537, 618, 738, 933, 966
Sau96I GGNCC 5 cut(s) 340, 386, 413, 568, 686
SchI GAGTC 1 cut(s) 796
SduI GDGCHC 2 cut(s) 168, 321
SetI ASST 8 cut(s) 87, 208, 525, 609, 831, 866, 961, 1008
SfaNI GCATC 3 cut(s) 112, 539, 669
SfcI CTRYAG 1 cut(s) 634
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 2 cut(s) 386, 413
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 6 cut(s) 335, 417, 673, 795, 946, 977
SsiI CCGC 1 cut(s) 252
SspMI CTAG 1 cut(s) 629
StyI CCWWGG 2 cut(s) 81, 693
TaaI ACNGT 2 cut(s) 170, 222
TaqI TCGA 2 cut(s) 321, 950
TasI AATT 6 cut(s) 335, 417, 673, 795, 946, 977
TatI WGTACW 1 cut(s) 455
TfiI GAWTC 3 cut(s) 724, 893, 995
Tru1I TTAA 4 cut(s) 144, 305, 744, 876
Tru9I TTAA 4 cut(s) 144, 305, 744, 876
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 2 cut(s) 29, 653
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 4 cut(s) 494, 533, 544, 970
TspRI CASTG 1 cut(s) 173
VneI GTGCAC 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 386, 413
XapI RAATTY 3 cut(s) 673, 795, 977
XceI RCATGY 1 cut(s) 496
XhoI CTCGAG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 676
XspI CTAG 1 cut(s) 629
Zsp2I ATGCAT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.