Rmu_sc0001673.1_g000040

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001673.1
OG0000597
Physical Location & Seq
Forward (+)
221468 .. 223448
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001673.1_g000040.1.cds

Sequence Viewer

Length: 813 bp
atgtcagttcacgtacttgatatagcactgtctgagattgatgaaaattccaagtgcattttgccaggaaattcttccaaagggtcccaaaaggactattccttgaagagtagcactgtaagtcgcgtttttgggatctttaatgctaatgccatcattgctacaacatatggcaatggcattattccagaaattcaggcaacggtagcagcaccagtgaagggaaagatgtttaagggactatctgtttgttatgctgttgtgacgacgacttccttcagtgttgctatctctggttattgggcatttggaaacaaagctgaaggccttatccttagcaacttcttggatgatggcaagcctttgatcccaatgtggctcattttcatgaccaacgttttcaccatgttccaactttcagctgtgggtgtggtatatctgcagcccacaaatgaagtgctagagacaacatttgcagacccaacaagaaacgagttgtctgctcgcaatgtgatcccgaggttaatctcccgttcactgtctgtcatgtcagcaacatccatagcagcaatgcttccatttttcggggatatcaattcagtgattggggcatttggttttatccctcttgatttcgttttgcctgctgttctcttcaacttgacatttaagccatcgaaacgaagccccatttactggttgaacatcactattgctgtggtattctcagtcttgggaattataggtgcagttgcagctataagacaaatgagcctcgatgccaaaacttataagttatttgctaatgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

270

Amino Acids

29.17

Weight (kDa)

9.04

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 792
AccB7I CCANNNNNTGG 1 cut(s) 696
AccII CGCG 1 cut(s) 126
AclI AACGTT 1 cut(s) 396
AclWI GGATC 3 cut(s) 143, 361, 508
AcsI RAATTY 3 cut(s) 46, 70, 192
AcuI CTGAAG 2 cut(s) 262, 342
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 3 cut(s) 221, 584, 696
AgsI TTSAA 3 cut(s) 106, 658, 703
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 3 cut(s) 320, 422, 758
AluI AGCT 3 cut(s) 320, 422, 758
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 3 cut(s) 143, 361, 508
Ama87I CYCGRG 1 cut(s) 517
AoxI GGCC 1 cut(s) 325
ApeKI GCWGC 4 cut(s) 209, 442, 566, 755
ApoI RAATTY 3 cut(s) 46, 70, 192
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
Asp700I GAANNNNTTC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 517
AvaII GGWCC 1 cut(s) 84
BbvI GCAGC 4 cut(s) 221, 454, 578, 767
BccI CCATC 3 cut(s) 161, 347, 682
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciT130I CCWGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 1 cut(s) 461
BfmI CTRYAG 1 cut(s) 440
BisI GCNGC 4 cut(s) 210, 443, 567, 756
BlsI GCNGC 4 cut(s) 211, 444, 568, 757
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 517
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 2 cut(s) 85, 86
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 769
Bpu10I CCTNAGC 1 cut(s) 335
BsaAI YACGTR 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 518
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 584, 696
Bse1I ACTGG 2 cut(s) 215, 701
Bse3DI GCAATG 4 cut(s) 156, 181, 514, 576
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 518
BseGI GGATG 2 cut(s) 355, 557
BseLI CCNNNNNNNGG 3 cut(s) 221, 584, 696
BseMI GCAATG 4 cut(s) 156, 181, 514, 576
BseMII CTCAG 2 cut(s) 24, 741
BseNI ACTGG 2 cut(s) 215, 701
BseXI GCAGC 4 cut(s) 221, 454, 578, 767
BsgI GTGCAG 1 cut(s) 768
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 517
BslFI GGGAC 2 cut(s) 70, 252
BslI CCNNNNNNNGG 3 cut(s) 221, 584, 696
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 2 cut(s) 70, 252
BsnI GGCC 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 517
Bsp143I GATC 3 cut(s) 135, 366, 513
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 2 cut(s) 25, 740
BspFNI CGCG 1 cut(s) 126
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 85, 86
BspMAI CTGCAG 1 cut(s) 444
BspPI GGATC 3 cut(s) 143, 361, 508
BsrDI GCAATG 4 cut(s) 156, 181, 514, 576
BsrI ACTGG 2 cut(s) 215, 701
BssECI CCNNGG 1 cut(s) 518
BssMI GATC 3 cut(s) 135, 366, 513
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 4 cut(s) 30, 118, 205, 540
Bst6I CTCTTC 2 cut(s) 101, 659
BstBAI YACGTR 1 cut(s) 13
BstC8I GCNNGC 3 cut(s) 359, 505, 645
BstDEI CTNAG 3 cut(s) 33, 335, 727
BstF5I GGATG 2 cut(s) 355, 557
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 3 cut(s) 138, 369, 516
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 3 cut(s) 135, 366, 513
BstMWI GCNNNNNNNGC 3 cut(s) 158, 206, 755
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 440
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 4 cut(s) 221, 454, 578, 767
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 1 cut(s) 327
BtsCI GGATG 2 cut(s) 355, 557
BtsIMutI CAGTG 6 cut(s) 26, 114, 222, 286, 536, 606
Cac8I GCNNGC 3 cut(s) 359, 505, 645
CciI TCATGA 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 14
CviAII CATG 3 cut(s) 388, 406, 547
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 3 cut(s) 33, 335, 727
DpnI GATC 3 cut(s) 137, 368, 515
DpnII GATC 3 cut(s) 135, 366, 513
Eam1104I CTCTTC 2 cut(s) 101, 659
EarI CTCTTC 2 cut(s) 101, 659
Eco147I AGGCCT 1 cut(s) 327
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 262, 342
Eco88I CYCGRG 1 cut(s) 517
EcoO109I RGGNCCY 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 64
EcoRV GATATC 1 cut(s) 592
FaeI CATG 3 cut(s) 391, 409, 550
FaqI GGGAC 2 cut(s) 70, 252
FatI CATG 3 cut(s) 387, 405, 546
FauNDI CATATG 1 cut(s) 169
Fnu4HI GCNGC 4 cut(s) 210, 443, 567, 756
FokI GGATG 2 cut(s) 362, 544
Fsp4HI GCNGC 4 cut(s) 210, 443, 567, 756
FspBI CTAG 1 cut(s) 461
GluI GCNGC 4 cut(s) 210, 443, 567, 756
HaeIII GGCC 1 cut(s) 327
Hin1II CATG 3 cut(s) 391, 409, 550
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 2 cut(s) 10, 536
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 4 cut(s) 188, 388, 517, 629
Hpy8I GTNNAC 2 cut(s) 10, 536
Hpy99I CGWCG 1 cut(s) 271
HpyAV CCTTC 3 cut(s) 214, 286, 317
HpyCH4III ACNGT 4 cut(s) 30, 118, 205, 540
HpyCH4IV ACGT 2 cut(s) 12, 396
HpyCH4V TGCA 5 cut(s) 57, 442, 476, 749, 755
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 206, 755
HpyF3I CTNAG 3 cut(s) 33, 335, 727
HpySE526I ACGT 2 cut(s) 12, 396
Hsp92II CATG 3 cut(s) 391, 409, 550
KflI GGGWCCC 1 cut(s) 84
Kzo9I GATC 3 cut(s) 135, 366, 513
LpnPI CCDG 8 cut(s) 51, 78, 182, 201, 228, 279, 657, 682
Lsp1109I GCAGC 4 cut(s) 221, 454, 578, 767
LweI GCATC 1 cut(s) 769
MaeI CTAG 1 cut(s) 461
MaeII ACGT 2 cut(s) 12, 396
MaeIII GTNAC 1 cut(s) 262
MalI GATC 3 cut(s) 137, 368, 515
MboI GATC 3 cut(s) 135, 366, 513
MboII GAAGA 3 cut(s) 66, 118, 646
MflI RGATCY 1 cut(s) 135
MluCI AATT 5 cut(s) 46, 70, 192, 595, 738
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 3 cut(s) 513, 636, 785
MroXI GAANNNNTTC 1 cut(s) 73
MseI TTAA 4 cut(s) 141, 234, 524, 669
MslI CAYNNNNRTG 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 3 cut(s) 158, 206, 755
NdeI CATATG 1 cut(s) 169
NdeII GATC 3 cut(s) 135, 366, 513
NlaIII CATG 3 cut(s) 391, 409, 550
NlaIV GGNNCC 2 cut(s) 85, 86
NmuCI GTSAC 1 cut(s) 262
PagI TCATGA 1 cut(s) 387
PceI AGGCCT 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 696
PkrI GCNGC 4 cut(s) 211, 444, 568, 757
Ppu21I YACGTR 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 84
PsiI TTATAA 1 cut(s) 792
Psp1406I AACGTT 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 85, 86
PspPI GGNCC 1 cut(s) 84
PspPPI RGGWCCY 1 cut(s) 84
PstI CTGCAG 1 cut(s) 444
PsuI RGATCY 1 cut(s) 135
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 386
SaqAI TTAA 4 cut(s) 141, 234, 524, 669
SatI GCNGC 4 cut(s) 210, 443, 567, 756
Sau3AI GATC 3 cut(s) 135, 366, 513
Sau96I GGNCC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 66
SetI ASST 7 cut(s) 15, 322, 399, 424, 524, 748, 760
SfaNI GCATC 1 cut(s) 769
SfcI CTRYAG 1 cut(s) 440
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 386
Sse9I AATT 5 cut(s) 46, 70, 192, 595, 738
SseBI AGGCCT 1 cut(s) 327
SspMI CTAG 1 cut(s) 461
StuI AGGCCT 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 4 cut(s) 30, 118, 205, 540
TaiI ACGT 2 cut(s) 15, 399
TaqI TCGA 2 cut(s) 677, 777
TasI AATT 5 cut(s) 46, 70, 192, 595, 738
Tru1I TTAA 4 cut(s) 141, 234, 524, 669
Tru9I TTAA 4 cut(s) 141, 234, 524, 669
TscAI CASTG 6 cut(s) 33, 121, 222, 286, 543, 606
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 4 cut(s) 209, 442, 566, 755
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 57, 376, 468
TspRI CASTG 6 cut(s) 33, 121, 222, 286, 543, 606
Van91I CCANNNNNTGG 1 cut(s) 696
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 3 cut(s) 46, 70, 192
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.