Rmu_sc0016880.1_g000002

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016880.1
OG0000597
Physical Location & Seq
Reverse (-)
4301 .. 10702
6402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016880.1_g000002.1.cds

Sequence Viewer

Length: 1275 bp
atggggactctggcaccaaactccatagcagcagaagcacactatcgtaatcaagatcaagtagtagatggtaatcatgccaaggttggtcaagatgatgatgaccaacagaaccaactggatgccggtgccaagtttgttcttaaatccaaaggatcatgggtgcactgtggttatcatttgactacttcaatagttgctccacctctgctaagtctaccgtacgctttcacattcctcggatggacgggcggagttatttgtctggtgatcggagcattagtaactttctactcgtacaacttaatctctctggtgctcgagcattatgctcaattgggtcatcgccaacttcgcttcagagacatggctcgtgacattttaggacccaaatggggtcgctatttcgttggtccaattcagtttatggtatgctatggtgctgttgtggcttgtactcttttgggagggcaatgcatgaaggcagtttacatgctgacaaacccaaatgggagcatgaagctgtatgagtttgtgatcatatttggatgcttcatgctgattttggcccaaatcccatcttttcactcactacggcacatcaaccttgtctccatgatcctttgcctagcgtatagtgtttgtgctactgctgcttgcatctatattggaaattcttcaaaaggaccacccaaggactattctttgaagggcaacaccgagaaccagatttttgggatatttaatgccaatgccatcattgctacgacatacggcaatggtatcattccagaaattcaggcaacaatcgcagcaccagtgaagggaaagatgttcaagggattgtgtgtttgttacacaatagtcacaatgactttcttcagcgttgcgatatctggctattgggcatttggtaaccaatctgaaggcctcatccttagcaacttcttgtccgatggcaaccctttggtgccgaagtggttcattttcatgacgaacattttcaccatattccagctttccgctgttggtgtggtttatctgcagcccacaaatgaagtactagagagagcatttgcagacccaacaaggaatactgataatgcgtgttcccgtctttgtattgccaatgatgtttgttgccctatctcttgtattactgttagtgcttcccctctttgtattgctgataatgcttctagtcctctttacatctctgatattgcttcttgccctcgttctgataatgcctcttgctctctttgctactattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

424

Amino Acids

46.22

Weight (kDa)

7.0

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 13, 128, 970
AccI GTMKAC 1 cut(s) 217
AciI CCGC 2 cut(s) 252, 1023
AclWI GGATC 2 cut(s) 163, 613
AcsI RAATTY 2 cut(s) 673, 795
AcuI CTGAAG 3 cut(s) 343, 865, 945
AfaI GTAC 4 cut(s) 224, 299, 457, 1062
AfiI CCNNNNNNNGG 2 cut(s) 395, 824
AgsI TTSAA 4 cut(s) 192, 681, 709, 838
AluBI AGCT 2 cut(s) 523, 1018
AluI AGCT 2 cut(s) 523, 1018
Alw21I GWGCWC 2 cut(s) 168, 321
Alw26I GTCTC 2 cut(s) 357, 616
Alw44I GTGCAC 1 cut(s) 164
AlwI GGATC 2 cut(s) 163, 613
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 2 cut(s) 567, 928
ApaLI GTGCAC 1 cut(s) 164
ApeKI GCWGC 4 cut(s) 29, 653, 812, 1045
ApoI RAATTY 2 cut(s) 673, 795
Asp700I GAANNNNTTC 3 cut(s) 676, 980, 1001
AspS9I GGNCC 4 cut(s) 386, 413, 568, 686
AsuHPI GGTGA 2 cut(s) 280, 997
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 3 cut(s) 386, 413, 686
BaeGI GKGCMC 1 cut(s) 168
BanI GGYRCC 3 cut(s) 13, 128, 970
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
BauI CACGAG 1 cut(s) 372
Bbv12I GWGCWC 2 cut(s) 168, 321
BbvI GCAGC 4 cut(s) 41, 640, 824, 1057
BccI CCATC 5 cut(s) 62, 237, 586, 764, 950
BceAI ACGGC 2 cut(s) 611, 790
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BclI TGATCA 1 cut(s) 537
BcoDI GTCTC 2 cut(s) 357, 616
BfaI CTAG 3 cut(s) 629, 1064, 1200
BfmI CTRYAG 1 cut(s) 1043
BisI GCNGC 4 cut(s) 30, 654, 813, 1046
BlsI GCNGC 4 cut(s) 31, 655, 814, 1047
BmcAI AGTACT 1 cut(s) 1062
Bme18I GGWCC 3 cut(s) 386, 413, 686
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 4 cut(s) 386, 413, 568, 686
BmiI GGNNCC 4 cut(s) 15, 130, 388, 972
BmsI GCATC 3 cut(s) 112, 539, 669
Bpu10I CCTNAGC 1 cut(s) 938
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 81, 238, 693
BsaXI ACNNNNNCTCC 4 cut(s) 267, 297, 596, 626
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 824
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 123, 818
Bse3DI GCAATG 3 cut(s) 479, 759, 784
Bse8I GATNNNNATC 1 cut(s) 72
BseDI CCNNGG 3 cut(s) 81, 238, 693
BseGI GGATG 4 cut(s) 127, 248, 554, 933
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 395, 824
BseMI GCAATG 3 cut(s) 479, 759, 784
BseNI ACTGG 2 cut(s) 123, 818
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 4 cut(s) 41, 640, 824, 1057
BshFI GGCC 2 cut(s) 569, 930
BshNI GGYRCC 3 cut(s) 13, 128, 970
BsiHKAI GWGCWC 2 cut(s) 168, 321
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 126
BsiWI CGTACG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 395, 824
BsmAI GTCTC 2 cut(s) 357, 616
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 2 cut(s) 569, 930
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 168, 321
Bsp143I GATC 5 cut(s) 55, 155, 270, 537, 618
BspACI CCGC 2 cut(s) 252, 1023
BspANI GGCC 2 cut(s) 569, 930
BspHI TCATGA 1 cut(s) 990
BspLI GGNNCC 4 cut(s) 15, 130, 388, 972
BspMAI CTGCAG 1 cut(s) 1047
BspPI GGATC 2 cut(s) 163, 613
BspT107I GGYRCC 3 cut(s) 13, 128, 970
BsrDI GCAATG 3 cut(s) 479, 759, 784
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 2 cut(s) 123, 818
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 3 cut(s) 81, 238, 693
BssMI GATC 5 cut(s) 55, 155, 270, 537, 618
BssSI CACGAG 1 cut(s) 372
BssT1I CCWWGG 2 cut(s) 81, 693
Bst2BI CACGAG 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 170, 222, 1162
BstC8I GCNNGC 1 cut(s) 658
BstDEI CTNAG 2 cut(s) 212, 938
BstEII GGTNACC 1 cut(s) 914
BstF5I GGATG 4 cut(s) 127, 248, 554, 933
BstKTI GATC 5 cut(s) 58, 158, 273, 540, 621
BstMAI GTCTC 2 cut(s) 357, 616
BstMBI GATC 5 cut(s) 55, 155, 270, 537, 618
BstMWI GCNNNNNNNGC 8 cut(s) 35, 354, 449, 653, 761, 809, 1193, 1263
BstNSI RCATGY 1 cut(s) 496
BstPI GGTNACC 1 cut(s) 914
BstSFI CTRYAG 1 cut(s) 1043
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 4 cut(s) 41, 640, 824, 1057
BstXI CCANNNNNNTGG 1 cut(s) 734
BsuRI GGCC 2 cut(s) 569, 930
BtgZI GCGATG 1 cut(s) 329
BtsCI GGATG 4 cut(s) 127, 248, 554, 933
BtsIMutI CAGTG 2 cut(s) 166, 825
Cac8I GCNNGC 1 cut(s) 658
CciI TCATGA 1 cut(s) 990
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 4 cut(s) 386, 413, 568, 686
Csp6I GTAC 4 cut(s) 223, 298, 456, 1061
CviAII CATG 9 cut(s) 77, 159, 367, 478, 493, 517, 556, 616, 991
CviJI RGCY 8 cut(s) 371, 452, 523, 569, 900, 930, 1018, 1048
CviKI_1 RGCY 8 cut(s) 371, 452, 523, 569, 900, 930, 1018, 1048
CviQI GTAC 4 cut(s) 223, 298, 456, 1061
DdeI CTNAG 2 cut(s) 212, 938
DpnI GATC 5 cut(s) 57, 157, 272, 539, 620
DpnII GATC 5 cut(s) 55, 155, 270, 537, 618
EciI GGCGGA 1 cut(s) 267
Eco130I CCWWGG 2 cut(s) 81, 693
Eco147I AGGCCT 1 cut(s) 930
Eco32I GATATC 1 cut(s) 894
Eco47I GGWCC 3 cut(s) 386, 413, 686
Eco57I CTGAAG 3 cut(s) 343, 865, 945
Eco88I CYCGRG 1 cut(s) 320
Eco91I GGTNACC 1 cut(s) 914
EcoO109I RGGNCCY 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 914
EcoRV GATATC 1 cut(s) 894
EcoT14I CCWWGG 2 cut(s) 81, 693
EcoT22I ATGCAT 1 cut(s) 479
ErhI CCWWGG 2 cut(s) 81, 693
FaeI CATG 9 cut(s) 80, 162, 370, 481, 496, 520, 559, 619, 994
FaqI GGGAC 1 cut(s) 19
FatI CATG 9 cut(s) 76, 158, 366, 477, 492, 516, 555, 615, 990
FbaI TGATCA 1 cut(s) 537
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 4 cut(s) 30, 654, 813, 1046
FokI GGATG 4 cut(s) 134, 255, 561, 920
Fsp4HI GCNGC 4 cut(s) 30, 654, 813, 1046
FspBI CTAG 3 cut(s) 629, 1064, 1200
GluI GCNGC 4 cut(s) 30, 654, 813, 1046
HaeIII GGCC 2 cut(s) 569, 930
HapII CCGG 1 cut(s) 126
Hin1II CATG 9 cut(s) 80, 162, 370, 481, 496, 520, 559, 619, 994
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 280, 997
Hpy166II GTNNAC 3 cut(s) 166, 218, 490
Hpy188I TCNGA 7 cut(s) 242, 275, 362, 925, 955, 1219, 1243
Hpy188III TCNNGA 5 cut(s) 53, 92, 374, 791, 991
Hpy8I GTNNAC 3 cut(s) 166, 218, 490
HpyAV CCTTC 4 cut(s) 475, 703, 817, 920
HpyCH4III ACNGT 3 cut(s) 170, 222, 1162
HpyCH4V TGCA 5 cut(s) 166, 477, 660, 1045, 1079
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 354, 449, 653, 761, 809, 1193, 1263
HpyF3I CTNAG 2 cut(s) 212, 938
Hsp92II CATG 9 cut(s) 80, 162, 370, 481, 496, 520, 559, 619, 994
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 5 cut(s) 55, 155, 270, 537, 618
LmnI GCTCC 3 cut(s) 205, 275, 513
Lsp1109I GCAGC 4 cut(s) 41, 640, 824, 1057
LweI GCATC 3 cut(s) 112, 539, 669
MaeI CTAG 3 cut(s) 629, 1064, 1200
MaeIII GTNAC 5 cut(s) 283, 374, 854, 865, 914
MalI GATC 5 cut(s) 57, 157, 272, 539, 620
MboI GATC 5 cut(s) 55, 155, 270, 537, 618
MboII GAAGA 2 cut(s) 669, 871
MfeI CAATTG 1 cut(s) 335
MhlI GDGCHC 2 cut(s) 168, 321
MluCI AATT 4 cut(s) 335, 417, 673, 795
MnlI CCTC 8 cut(s) 216, 248, 461, 941, 1185, 1215, 1245, 1261
Mph1103I ATGCAT 1 cut(s) 479
MroXI GAANNNNTTC 3 cut(s) 676, 980, 1001
MseI TTAA 4 cut(s) 144, 305, 744, 1273
MslI CAYNNNNRTG 1 cut(s) 989
MspA1I CMGCKG 1 cut(s) 1025
MspI CCGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 335
MwoI GCNNNNNNNGC 8 cut(s) 35, 354, 449, 653, 761, 809, 1193, 1263
NdeII GATC 5 cut(s) 55, 155, 270, 537, 618
NlaIII CATG 9 cut(s) 80, 162, 370, 481, 496, 520, 559, 619, 994
NlaIV GGNNCC 4 cut(s) 15, 130, 388, 972
NmuCI GTSAC 2 cut(s) 374, 865
NsiI ATGCAT 1 cut(s) 479
NspI RCATGY 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 320
PagI TCATGA 1 cut(s) 990
PceI AGGCCT 1 cut(s) 930
PdmI GAANNNNTTC 3 cut(s) 676, 980, 1001
Pfl23II CGTACG 1 cut(s) 222
PkrI GCNGC 4 cut(s) 31, 655, 814, 1047
PpuMI RGGWCCY 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 386
PspEI GGTNACC 1 cut(s) 914
PspLI CGTACG 1 cut(s) 222
PspN4I GGNNCC 4 cut(s) 15, 130, 388, 972
PspPI GGNCC 4 cut(s) 386, 413, 568, 686
PspPPI RGGWCCY 1 cut(s) 386
PspXI VCTCGAGB 1 cut(s) 320
PstI CTGCAG 1 cut(s) 1047
RsaI GTAC 4 cut(s) 224, 299, 457, 1062
RsaNI GTAC 4 cut(s) 223, 298, 456, 1061
RseI CAYNNNNRTG 1 cut(s) 989
SaqAI TTAA 4 cut(s) 144, 305, 744, 1273
SatI GCNGC 4 cut(s) 30, 654, 813, 1046
Sau3AI GATC 5 cut(s) 55, 155, 270, 537, 618
Sau96I GGNCC 4 cut(s) 386, 413, 568, 686
ScaI AGTACT 1 cut(s) 1062
SduI GDGCHC 2 cut(s) 168, 321
SetI ASST 5 cut(s) 87, 208, 525, 609, 1020
SfaNI GCATC 3 cut(s) 112, 539, 669
SfcI CTRYAG 1 cut(s) 1043
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 3 cut(s) 386, 413, 686
SlaI CTCGAG 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 989
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 4 cut(s) 335, 417, 673, 795
SseBI AGGCCT 1 cut(s) 930
SsiI CCGC 2 cut(s) 252, 1023
SspMI CTAG 3 cut(s) 629, 1064, 1200
StuI AGGCCT 1 cut(s) 930
StyI CCWWGG 2 cut(s) 81, 693
TaaI ACNGT 3 cut(s) 170, 222, 1162
TaqI TCGA 1 cut(s) 321
TasI AATT 4 cut(s) 335, 417, 673, 795
TatI WGTACW 2 cut(s) 455, 1060
Tru1I TTAA 4 cut(s) 144, 305, 744, 1273
Tru9I TTAA 4 cut(s) 144, 305, 744, 1273
TscAI CASTG 2 cut(s) 173, 825
TseFI GTSAC 2 cut(s) 374, 865
TseI GCWGC 4 cut(s) 29, 653, 812, 1045
Tsp45I GTSAC 2 cut(s) 374, 865
TspDTI ATGAA 6 cut(s) 494, 533, 544, 973, 979, 1071
TspRI CASTG 2 cut(s) 173, 825
VneI GTGCAC 1 cut(s) 164
VpaK11BI GGWCC 3 cut(s) 386, 413, 686
XapI RAATTY 2 cut(s) 673, 795
XceI RCATGY 1 cut(s) 496
XhoI CTCGAG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 217
XmnI GAANNNNTTC 3 cut(s) 676, 980, 1001
XspI CTAG 3 cut(s) 629, 1064, 1200
ZrmI AGTACT 1 cut(s) 1062
Zsp2I ATGCAT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.