RchiOBHm_Chr1g0334311

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000597
Physical Location & Seq
Forward (+)
26504166 .. 26506232
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56305

Sequence Viewer

Length: 1356 bp
ATGGAGCCAGTAGTAGTGGCAACAGAGGAAGATGAAGCCAACATTCCAAAGAAACTTGATGCTGGAGCTCTATTTGTGCTCAAATCCAGAGGGTCATGGTTGCACTGTGGATATCACTTGACAACTACAATTGTAGCTCCTGCACTCTTGATTCTTCCCTATGCACTTTCCCTGATGGGTTGGTTTGCCGGTGTTATATGCCTGACTGTTTCAGCTCTGGTAACTTTCTATTCCTACAACCTTCTGTCCTTGGTTTTAGAGCACCATGCTCACCTTGGTCAGCGCCAGCTTCGCTTCCGCGACATGGCCAGGGATATTTTGGGACCAAGATGGGGAAGATATTTTGTAGGTCCAATTCAATTTGGCCTATGCTATGGGGCAGTTATAGCTTGCATTCTTTTGGGAGGACAGAGCCTTAAGTACATATTTCTGCTCTCTAGTTCAAGGCCGGAGACCATGAAACTCTACCAATTTGTTATTATATTTGGTGTCCTAATGCTAGTGTTGGCACAAATTCCATCATTCCACTCCTTAAGGCATCTCAACCTTGTCTCTCTGGTCCTTTCTCTTGCCTATAGCGCCTGTGCCACAGCCGGTTCCATATACATTGGAAATTCCATGAATGCTCCTAGGAAGGACTATTCCTTAAATGGAAGTAAACAGAATCGCATTTTTGGATCCTTCAATGCTATTTCAATCATTGCTACCACGTACGGAAATGGCATTATTCCTGAAATACAGGCTACTATAGCACCGCCAGTCAAAGGAAAAATGTTCAAGGGATTATGTGTATGTTATGCTGTTGTACTGTCAACATTTTTCAGTGTTGCTATATCGGGATATTGGGCATTTGGTAATCAGGCCAAAGGTACAATTTTACTCAACTTTCTAGTCGATGAGAAGCCTCTGTTGCCGACTTGGGTTCTCTTGATGACTAATGTCTTCACCTTCTTGCAAGTAGCAGCTGTTAGTGTGGTTAACTTACAACCAACAAATGAAGTGCTCGAACGCAAGTTTGTCAATGCCAAGATTGATCAGTTCTCTTTTCGAAATGTAGTGCCAAGATTGGTTTATCGATCATCGTCTGTCGTGATAGCCACAACAGTTGCAGCTATGTTTCCTTTCTTTGGAGACATCAATGCGTTAATAGGAGCATTTGGTTGCATTCCTCTCGACTTCATTTTGCCAGTGGTGTTCTACAATGTTGTATTCAAGCCATCCAAGTACAGCCTTCTTTTCTGGGGAAACACAATAATTGCTTCAATCTTTTCGGCATTAGGAGTGTTGGGGGCAATATCTTCAATCCGTCAAATAATTCTTGATGCCAACACATACAGTTTGTTTGCTAACGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

451

Amino Acids

49.53

Weight (kDa)

9.3

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 30 - 439 7.2e-70 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 300
AciI CCGC 2 cut(s) 298, 755
AclWI GGATC 2 cut(s) 672, 685
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 2 cut(s) 513, 613
AfaI GTAC 5 cut(s) 422, 713, 807, 871, 1226
AfiI CCNNNNNNNGG 4 cut(s) 304, 332, 764, 1127
AflII CTTAAG 2 cut(s) 416, 532
AgsI TTSAA 8 cut(s) 359, 444, 685, 696, 778, 1213, 1263, 1302
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 7 cut(s) 68, 137, 215, 289, 389, 965, 1112
AluI AGCT 7 cut(s) 68, 137, 215, 289, 389, 965, 1112
Alw21I GWGCWC 4 cut(s) 70, 81, 264, 1005
Alw26I GTCTC 3 cut(s) 446, 556, 1125
AlwI GGATC 2 cut(s) 672, 685
AoxI GGCC 4 cut(s) 306, 364, 446, 861
ApeKI GCWGC 2 cut(s) 962, 1109
ApoI RAATTY 2 cut(s) 513, 613
AspA2I CCTAGG 1 cut(s) 629
AspLEI GCGC 2 cut(s) 285, 581
AspS9I GGNCC 3 cut(s) 323, 350, 559
AsuHPI GGTGA 2 cut(s) 263, 937
AsuII TTCGAA 1 cut(s) 1048
AvaII GGWCC 3 cut(s) 323, 350, 559
AvrII CCTAGG 1 cut(s) 629
BalI TGGCCA 1 cut(s) 308
BamHI GGATCC 1 cut(s) 677
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 934
Bbv12I GWGCWC 4 cut(s) 70, 81, 264, 1005
BbvI GCAGC 2 cut(s) 974, 1121
BccI CCATC 4 cut(s) 169, 324, 526, 1225
BcgI CGANNNNNNTGC 2 cut(s) 1153, 1187
BciT130I CCWGG 1 cut(s) 310
BclI TGATCA 1 cut(s) 1033
BcoDI GTCTC 3 cut(s) 446, 556, 1125
BfaI CTAG 4 cut(s) 438, 500, 630, 890
BfmI CTRYAG 2 cut(s) 574, 747
BfoI RGCGCY 2 cut(s) 286, 582
BfrI CTTAAG 2 cut(s) 416, 532
BisI GCNGC 2 cut(s) 963, 1110
BlnI CCTAGG 1 cut(s) 629
BlsI GCNGC 2 cut(s) 964, 1111
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 3 cut(s) 323, 350, 559
BmgT120I GGNCC 3 cut(s) 323, 350, 559
BmiI GGNNCC 4 cut(s) 6, 324, 598, 679
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 3 cut(s) 49, 547, 1312
BoxI GACNNNNGTC 1 cut(s) 938
BpiI GAAGAC 1 cut(s) 934
BpmI CTGGAG 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 1048
Bsa29I ATCGAT 1 cut(s) 1075
BsaAI YACGTR 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 4 cut(s) 249, 274, 309, 629
Bsc4I CCNNNNNNNGG 4 cut(s) 304, 332, 764, 1127
Bse118I RCCGGY 2 cut(s) 188, 593
Bse1I ACTGG 3 cut(s) 8, 758, 1187
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 1 cut(s) 310
BseCI ATCGAT 1 cut(s) 1075
BseDI CCNNGG 4 cut(s) 249, 274, 309, 629
BseGI GGATG 1 cut(s) 1217
BseLI CCNNNNNNNGG 4 cut(s) 304, 332, 764, 1127
BseMI GCAATG 1 cut(s) 699
BseNI ACTGG 3 cut(s) 8, 758, 1187
BseXI GCAGC 2 cut(s) 974, 1121
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 4 cut(s) 308, 366, 448, 863
BshVI ATCGAT 1 cut(s) 1075
BsiHKAI GWGCWC 4 cut(s) 70, 81, 264, 1005
BsiSI CCGG 3 cut(s) 189, 449, 594
BsiWI CGTACG 1 cut(s) 711
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 4 cut(s) 304, 332, 764, 1127
BsmAI GTCTC 3 cut(s) 446, 556, 1125
BsmFI GGGAC 1 cut(s) 336
BsmI GAATGC 3 cut(s) 393, 628, 1164
BsnI GGCC 4 cut(s) 308, 366, 448, 863
Bso31I GGTCTC 1 cut(s) 446
Bsp119I TTCGAA 1 cut(s) 1048
Bsp1286I GDGCHC 4 cut(s) 70, 81, 264, 1005
Bsp143I GATC 3 cut(s) 677, 1033, 1076
BspACI CCGC 2 cut(s) 298, 755
BspANI GGCC 4 cut(s) 308, 366, 448, 863
BspDI ATCGAT 1 cut(s) 1075
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 4 cut(s) 6, 324, 598, 679
BspPI GGATC 2 cut(s) 672, 685
BspT104I TTCGAA 1 cut(s) 1048
BspTI CTTAAG 2 cut(s) 416, 532
BspTNI GGTCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 2 cut(s) 188, 593
BsrI ACTGG 3 cut(s) 8, 758, 1187
BssAI RCCGGY 2 cut(s) 188, 593
BssECI CCNNGG 4 cut(s) 249, 274, 309, 629
BssMI GATC 3 cut(s) 677, 1033, 1076
BssT1I CCWWGG 3 cut(s) 249, 274, 629
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 5 cut(s) 107, 208, 810, 1105, 1337
BstAFI CTTAAG 2 cut(s) 416, 532
BstBAI YACGTR 1 cut(s) 711
BstBI TTCGAA 1 cut(s) 1048
BstC8I GCNNGC 2 cut(s) 287, 391
BstF5I GGATG 1 cut(s) 1217
BstFNI CGCG 1 cut(s) 300
BstH2I RGCGCY 2 cut(s) 286, 582
BstHHI GCGC 2 cut(s) 285, 581
BstKTI GATC 3 cut(s) 680, 1036, 1079
BstMAI GTCTC 3 cut(s) 446, 556, 1125
BstMBI GATC 3 cut(s) 677, 1033, 1076
BstMWI GCNNNNNNNGC 5 cut(s) 291, 386, 578, 749, 910
BstNI CCWGG 1 cut(s) 310
BstPAI GACNNNNGTC 1 cut(s) 938
BstSCI CCNGG 1 cut(s) 308
BstSFI CTRYAG 2 cut(s) 574, 747
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 974, 1121
BstV2I GAAGAC 1 cut(s) 934
BstX2I RGATCY 1 cut(s) 677
BstYI RGATCY 1 cut(s) 677
Bsu15I ATCGAT 1 cut(s) 1075
BsuRI GGCC 4 cut(s) 308, 366, 448, 863
BsuTUI ATCGAT 1 cut(s) 1075
BtsCI GGATG 1 cut(s) 1217
BtsIMutI CAGTG 3 cut(s) 103, 829, 1194
Cac8I GCNNGC 2 cut(s) 287, 391
CfoI GCGC 2 cut(s) 285, 581
Cfr10I RCCGGY 2 cut(s) 188, 593
Cfr13I GGNCC 3 cut(s) 323, 350, 559
ClaI ATCGAT 1 cut(s) 1075
Csp6I GTAC 5 cut(s) 421, 712, 806, 870, 1225
CspCI CAANNNNNGTGG 2 cut(s) 1087, 1122
CviAII CATG 5 cut(s) 96, 266, 304, 457, 619
CviQI GTAC 5 cut(s) 421, 712, 806, 870, 1225
DpnI GATC 3 cut(s) 679, 1035, 1078
DpnII GATC 3 cut(s) 677, 1033, 1076
EaeI YGGCCR 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 3 cut(s) 249, 274, 629
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 446
Eco32I GATATC 1 cut(s) 113
Eco47I GGWCC 3 cut(s) 323, 350, 559
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 308
EcoRV GATATC 1 cut(s) 113
EcoT14I CCWWGG 3 cut(s) 249, 274, 629
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 3 cut(s) 249, 274, 629
FaeI CATG 5 cut(s) 99, 269, 307, 460, 622
FaqI GGGAC 1 cut(s) 336
FatI CATG 5 cut(s) 95, 265, 303, 456, 618
FbaI TGATCA 1 cut(s) 1033
Fnu4HI GCNGC 2 cut(s) 963, 1110
FokI GGATG 1 cut(s) 1204
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 963, 1110
FspBI CTAG 4 cut(s) 438, 500, 630, 890
GlaI GCGC 2 cut(s) 284, 580
GluI GCNGC 2 cut(s) 963, 1110
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 2 cut(s) 286, 582
HaeIII GGCC 4 cut(s) 308, 366, 448, 863
HapII CCGG 3 cut(s) 189, 449, 594
HhaI GCGC 2 cut(s) 285, 581
Hin1II CATG 5 cut(s) 99, 269, 307, 460, 622
Hin6I GCGC 2 cut(s) 283, 579
HinP1I GCGC 2 cut(s) 283, 579
HincII GTYRAC 2 cut(s) 813, 979
HindII GTYRAC 2 cut(s) 813, 979
HinfI GANTC 2 cut(s) 151, 664
HpaI GTTAAC 1 cut(s) 979
HpaII CCGG 3 cut(s) 189, 449, 594
HphI GGTGA 2 cut(s) 263, 937
Hpy166II GTNNAC 3 cut(s) 659, 813, 979
Hpy188III TCNNGA 8 cut(s) 87, 148, 731, 837, 928, 1090, 1172, 1319
Hpy8I GTNNAC 3 cut(s) 659, 813, 979
HpyAV CCTTC 5 cut(s) 251, 628, 691, 958, 1241
HpyCH4III ACNGT 5 cut(s) 107, 208, 810, 1105, 1337
HpyCH4IV ACGT 2 cut(s) 710, 1350
HpyCH4V TGCA 7 cut(s) 103, 143, 164, 393, 955, 1109, 1164
HpyF10VI GCNNNNNNNGC 5 cut(s) 291, 386, 578, 749, 910
HpySE526I ACGT 2 cut(s) 710, 1350
Hsp92II CATG 5 cut(s) 99, 269, 307, 460, 622
HspAI GCGC 2 cut(s) 283, 579
Ksp22I TGATCA 1 cut(s) 1033
KspAI GTTAAC 1 cut(s) 979
Kzo9I GATC 3 cut(s) 677, 1033, 1076
LmnI GCTCC 5 cut(s) 4, 65, 142, 631, 1151
Lsp1109I GCAGC 2 cut(s) 974, 1121
LweI GCATC 3 cut(s) 49, 547, 1312
MaeI CTAG 4 cut(s) 438, 500, 630, 890
MaeII ACGT 2 cut(s) 710, 1350
MaeIII GTNAC 1 cut(s) 220
MalI GATC 3 cut(s) 679, 1035, 1078
MboI GATC 3 cut(s) 677, 1033, 1076
MboII GAAGA 5 cut(s) 41, 146, 348, 934, 1290
MfeI CAATTG 1 cut(s) 129
MflI RGATCY 1 cut(s) 677
MhlI GDGCHC 4 cut(s) 70, 81, 264, 1005
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 9 cut(s) 129, 354, 359, 470, 513, 613, 873, 1254, 1314
MluNI TGGCCA 1 cut(s) 308
MnlI CCTC 5 cut(s) 19, 83, 398, 915, 1179
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
MseI TTAA 5 cut(s) 417, 533, 647, 978, 1145
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 965
MspCI CTTAAG 2 cut(s) 416, 532
MspI CCGG 3 cut(s) 189, 449, 594
MspR9I CCNGG 1 cut(s) 310
MunI CAATTG 1 cut(s) 129
Mva1269I GAATGC 3 cut(s) 393, 628, 1164
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 5 cut(s) 291, 386, 578, 749, 910
NdeII GATC 3 cut(s) 677, 1033, 1076
NlaIII CATG 5 cut(s) 99, 269, 307, 460, 622
NlaIV GGNNCC 4 cut(s) 6, 324, 598, 679
NspV TTCGAA 1 cut(s) 1048
PctI GAATGC 3 cut(s) 393, 628, 1164
PfeI GAWTC 2 cut(s) 151, 664
Pfl23II CGTACG 1 cut(s) 711
PkrI GCNGC 2 cut(s) 964, 1111
Ppu21I YACGTR 1 cut(s) 711
PshAI GACNNNNGTC 1 cut(s) 938
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspLI CGTACG 1 cut(s) 711
PspN4I GGNNCC 4 cut(s) 6, 324, 598, 679
PspPI GGNCC 3 cut(s) 323, 350, 559
PsuI RGATCY 1 cut(s) 677
PvuII CAGCTG 1 cut(s) 965
RsaI GTAC 5 cut(s) 422, 713, 807, 871, 1226
RsaNI GTAC 5 cut(s) 421, 712, 806, 870, 1225
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 5 cut(s) 417, 533, 647, 978, 1145
SatI GCNGC 2 cut(s) 963, 1110
Sau3AI GATC 3 cut(s) 677, 1033, 1076
Sau96I GGNCC 3 cut(s) 323, 350, 559
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 4 cut(s) 70, 81, 264, 1005
SfaNI GCATC 3 cut(s) 49, 547, 1312
SfcI CTRYAG 2 cut(s) 574, 747
SfuI TTCGAA 1 cut(s) 1048
SinI GGWCC 3 cut(s) 323, 350, 559
SmlI CTYRAG 2 cut(s) 416, 532
SmoI CTYRAG 2 cut(s) 416, 532
Sse9I AATT 9 cut(s) 129, 354, 359, 470, 513, 613, 873, 1254, 1314
SsiI CCGC 2 cut(s) 298, 755
SspMI CTAG 4 cut(s) 438, 500, 630, 890
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 3 cut(s) 249, 274, 629
TaaI ACNGT 5 cut(s) 107, 208, 810, 1105, 1337
TaiI ACGT 2 cut(s) 713, 1353
TaqI TCGA 5 cut(s) 894, 1005, 1048, 1075, 1173
TasI AATT 9 cut(s) 129, 354, 359, 470, 513, 613, 873, 1254, 1314
TatI WGTACW 3 cut(s) 420, 805, 1224
TfiI GAWTC 2 cut(s) 151, 664
Tru1I TTAA 5 cut(s) 417, 533, 647, 978, 1145
Tru9I TTAA 5 cut(s) 417, 533, 647, 978, 1145
TscAI CASTG 3 cut(s) 110, 829, 1194
TseI GCWGC 2 cut(s) 962, 1109
TspDTI ATGAA 5 cut(s) 48, 473, 635, 1011, 1168
TspGWI ACGGA 2 cut(s) 729, 1295
TspRI CASTG 3 cut(s) 110, 829, 1194
Vha464I CTTAAG 2 cut(s) 416, 532
VpaK11BI GGWCC 3 cut(s) 323, 350, 559
XapI RAATTY 2 cut(s) 513, 613
XcmI CCANNNNNNNNNTGG 2 cut(s) 272, 316
XmaJI CCTAGG 1 cut(s) 629
XspI CTAG 4 cut(s) 438, 500, 630, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.