Rh1AG138200

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000597
Physical Location & Seq
Forward (+)
26227103 .. 26229778
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG138200.1

Sequence Viewer

Length: 1005 bp
ATGGAGCCAGTAGTAGTGGCAACAGAGGAAGATGAAGCCAACATTCCAAAGAAACTTGATGCTGGAGCTCTATTTGTGCTCAAATCCAGAGGGTCATGGTTGCACTGTGGATATCACTTGACAACTTCAATTGTAGCTCCTGCACTCTTGAGTCTTCCCTATGCACTTTCCCTGATGGGTTGGTTTGCCGGCGTTATATGCCTGACTGTTTCAGCTCTGGTAACTTTCTATTCCTACAACCTTCTGTCCTTGGTTTTAGAGCACCATGCTCACCTTGGTCAGCGCCAGCTTCGCTTCCGCGACATGGCCAGGGATATTTTGGGACCAAGATGGGGAAGATATTTTGTAGGTCCAATTCAATTTGGCCTATGCTATGGTGCAGTTATAGCTTGCATTCTTTTAGGAGGACAGAGCCTTAAGTACATATTTCTGCTCTCTAGTTCAAGGCCGGAGACCATGAAACTCTACCAATTTATTATTATATTTGGTGTCCTAATGCTAGTGTTGGCACAAATTCCATCATTCCACTCCTTAAGGCATCTCAACCTTGTCTCTCTGGTCCTTTCTCTTGCCTATAGCGCCTGTGCCACAGCCGGTTCCATATACATTGGAAATTCCATGAATGCTTCCGGGAAGGACTATTCCTTAAATGGAAGCAAACAGAATCGCATTTTTGGATTCTTCAATGCTATTTCAATCATTGCTACCACGTACGGAAATGGCATTATTCCTGAAATACAGGCTACTATAGCACCGCCAGTCAAAGGAAAAATGTTCAAGGGATTATGTATATGTTATGCTGTTGTACTTTCAACATTTTTCAGTGTTGCTATATCGGGATATTGGGCATTTGGTAATCAGGCCAAAGGTACAATTTTACTCAACTTTCTAGTTGATGAGAAGCCTCTGTTGCCGACTTGGGTTCTCTTGATGACTAATGTCTTCACCTTCTTGCAAGTAGCAGCTGTTAGTGTGGTATGTAGACTAACTGAATGTATATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

334

Amino Acids

36.63

Weight (kDa)

9.01

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 30 - 325 3.5e-51 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 982
AccII CGCG 1 cut(s) 300
AciI CCGC 2 cut(s) 298, 755
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 2 cut(s) 513, 613
AfaI GTAC 4 cut(s) 422, 713, 807, 871
AfiI CCNNNNNNNGG 3 cut(s) 304, 332, 764
AflII CTTAAG 2 cut(s) 416, 532
AgsI TTSAA 7 cut(s) 129, 359, 444, 685, 696, 778, 813
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 6 cut(s) 68, 137, 215, 289, 389, 965
AluI AGCT 6 cut(s) 68, 137, 215, 289, 389, 965
Alw21I GWGCWC 3 cut(s) 70, 81, 264
Alw26I GTCTC 2 cut(s) 446, 556
AoxI GGCC 4 cut(s) 306, 364, 446, 861
ApeKI GCWGC 1 cut(s) 962
ApoI RAATTY 2 cut(s) 513, 613
AspLEI GCGC 2 cut(s) 285, 581
AspS9I GGNCC 3 cut(s) 323, 350, 559
AsuC2I CCSGG 1 cut(s) 631
AsuHPI GGTGA 2 cut(s) 263, 937
AvaII GGWCC 3 cut(s) 323, 350, 559
BalI TGGCCA 1 cut(s) 308
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 2 cut(s) 146, 934
Bbv12I GWGCWC 3 cut(s) 70, 81, 264
BbvI GCAGC 1 cut(s) 974
BccI CCATC 3 cut(s) 169, 324, 526
BciT130I CCWGG 1 cut(s) 310
BcnI CCSGG 1 cut(s) 631
BcoDI GTCTC 2 cut(s) 446, 556
BfaI CTAG 3 cut(s) 438, 500, 890
BfmI CTRYAG 2 cut(s) 574, 747
BfoI RGCGCY 2 cut(s) 286, 582
BfrI CTTAAG 2 cut(s) 416, 532
BisI GCNGC 1 cut(s) 963
BlsI GCNGC 1 cut(s) 964
Bme1390I CCNGG 2 cut(s) 310, 631
Bme18I GGWCC 3 cut(s) 323, 350, 559
BmgT120I GGNCC 3 cut(s) 323, 350, 559
BmiI GGNNCC 3 cut(s) 6, 324, 598
BmrFI CCNGG 2 cut(s) 310, 631
BmsI GCATC 2 cut(s) 49, 547
BoxI GACNNNNGTC 1 cut(s) 938
BpiI GAAGAC 2 cut(s) 146, 934
BpmI CTGGAG 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 631
BsaAI YACGTR 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 249, 274, 309
Bsc4I CCNNNNNNNGG 3 cut(s) 304, 332, 764
Bse118I RCCGGY 2 cut(s) 188, 593
Bse1I ACTGG 2 cut(s) 8, 758
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 3 cut(s) 249, 274, 309
BseLI CCNNNNNNNGG 3 cut(s) 304, 332, 764
BseMI GCAATG 1 cut(s) 699
BseNI ACTGG 2 cut(s) 8, 758
BseXI GCAGC 1 cut(s) 974
BsgI GTGCAG 2 cut(s) 126, 399
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 4 cut(s) 308, 366, 448, 863
BsiHKAI GWGCWC 3 cut(s) 70, 81, 264
BsiSI CCGG 4 cut(s) 189, 449, 594, 630
BsiWI CGTACG 1 cut(s) 711
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 3 cut(s) 304, 332, 764
BsmAI GTCTC 2 cut(s) 446, 556
BsmFI GGGAC 1 cut(s) 336
BsmI GAATGC 2 cut(s) 393, 628
BsnI GGCC 4 cut(s) 308, 366, 448, 863
Bso31I GGTCTC 1 cut(s) 446
Bsp1286I GDGCHC 3 cut(s) 70, 81, 264
BspACI CCGC 2 cut(s) 298, 755
BspANI GGCC 4 cut(s) 308, 366, 448, 863
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 3 cut(s) 6, 324, 598
BspTI CTTAAG 2 cut(s) 416, 532
BspTNI GGTCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 2 cut(s) 188, 593
BsrI ACTGG 2 cut(s) 8, 758
BssAI RCCGGY 2 cut(s) 188, 593
BssECI CCNNGG 3 cut(s) 249, 274, 309
BssT1I CCWWGG 2 cut(s) 249, 274
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 107, 208
BstAFI CTTAAG 2 cut(s) 416, 532
BstBAI YACGTR 1 cut(s) 711
BstC8I GCNNGC 3 cut(s) 190, 287, 391
BstFNI CGCG 1 cut(s) 300
BstH2I RGCGCY 2 cut(s) 286, 582
BstHHI GCGC 2 cut(s) 285, 581
BstMAI GTCTC 2 cut(s) 446, 556
BstMWI GCNNNNNNNGC 6 cut(s) 198, 291, 386, 578, 749, 910
BstNI CCWGG 1 cut(s) 310
BstPAI GACNNNNGTC 1 cut(s) 938
BstSCI CCNGG 2 cut(s) 308, 629
BstSFI CTRYAG 2 cut(s) 574, 747
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 974
BstV2I GAAGAC 2 cut(s) 146, 934
BsuRI GGCC 4 cut(s) 308, 366, 448, 863
BtsIMutI CAGTG 2 cut(s) 103, 829
Cac8I GCNNGC 3 cut(s) 190, 287, 391
CfoI GCGC 2 cut(s) 285, 581
Cfr10I RCCGGY 2 cut(s) 188, 593
Cfr13I GGNCC 3 cut(s) 323, 350, 559
Csp6I GTAC 4 cut(s) 421, 712, 806, 870
CviAII CATG 5 cut(s) 96, 266, 304, 457, 619
CviQI GTAC 4 cut(s) 421, 712, 806, 870
EaeI YGGCCR 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 249, 274
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 446
Eco32I GATATC 1 cut(s) 113
Eco47I GGWCC 3 cut(s) 323, 350, 559
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 308
EcoRV GATATC 1 cut(s) 113
EcoT14I CCWWGG 2 cut(s) 249, 274
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 249, 274
FaeI CATG 5 cut(s) 99, 269, 307, 460, 622
FaqI GGGAC 1 cut(s) 336
FatI CATG 5 cut(s) 95, 265, 303, 456, 618
FblI GTMKAC 1 cut(s) 982
Fnu4HI GCNGC 1 cut(s) 963
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 963
FspBI CTAG 3 cut(s) 438, 500, 890
GlaI GCGC 2 cut(s) 284, 580
GluI GCNGC 1 cut(s) 963
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 2 cut(s) 286, 582
HaeIII GGCC 4 cut(s) 308, 366, 448, 863
HapII CCGG 4 cut(s) 189, 449, 594, 630
HhaI GCGC 2 cut(s) 285, 581
Hin1II CATG 5 cut(s) 99, 269, 307, 460, 622
Hin6I GCGC 2 cut(s) 283, 579
HinP1I GCGC 2 cut(s) 283, 579
HinfI GANTC 3 cut(s) 151, 664, 678
HpaII CCGG 4 cut(s) 189, 449, 594, 630
HphI GGTGA 2 cut(s) 263, 937
Hpy166II GTNNAC 1 cut(s) 983
Hpy188III TCNNGA 5 cut(s) 87, 148, 731, 837, 928
Hpy8I GTNNAC 1 cut(s) 983
HpyAV CCTTC 3 cut(s) 251, 628, 958
HpyCH4III ACNGT 2 cut(s) 107, 208
HpyCH4IV ACGT 1 cut(s) 710
HpyCH4V TGCA 6 cut(s) 103, 143, 164, 380, 393, 955
HpyF10VI GCNNNNNNNGC 6 cut(s) 198, 291, 386, 578, 749, 910
HpySE526I ACGT 1 cut(s) 710
Hsp92II CATG 5 cut(s) 99, 269, 307, 460, 622
HspAI GCGC 2 cut(s) 283, 579
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
LmnI GCTCC 3 cut(s) 4, 65, 142
Lsp1109I GCAGC 1 cut(s) 974
LweI GCATC 2 cut(s) 49, 547
MaeI CTAG 3 cut(s) 438, 500, 890
MaeII ACGT 1 cut(s) 710
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 5 cut(s) 41, 146, 348, 673, 934
MfeI CAATTG 1 cut(s) 129
MhlI GDGCHC 3 cut(s) 70, 81, 264
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 7 cut(s) 129, 354, 359, 470, 513, 613, 873
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 160
MnlI CCTC 4 cut(s) 19, 83, 398, 915
Mox20I TGGCCA 1 cut(s) 308
MroNI GCCGGC 1 cut(s) 188
MscI TGGCCA 1 cut(s) 308
MseI TTAA 3 cut(s) 417, 533, 647
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 965
MspCI CTTAAG 2 cut(s) 416, 532
MspI CCGG 4 cut(s) 189, 449, 594, 630
MspR9I CCNGG 2 cut(s) 310, 631
MunI CAATTG 1 cut(s) 129
Mva1269I GAATGC 2 cut(s) 393, 628
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 6 cut(s) 198, 291, 386, 578, 749, 910
NaeI GCCGGC 1 cut(s) 190
NciI CCSGG 1 cut(s) 631
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 5 cut(s) 99, 269, 307, 460, 622
NlaIV GGNNCC 3 cut(s) 6, 324, 598
PctI GAATGC 2 cut(s) 393, 628
PdiI GCCGGC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 664, 678
Pfl23II CGTACG 1 cut(s) 711
PfoI TCCNGGA 1 cut(s) 629
PkrI GCNGC 1 cut(s) 964
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Ppu21I YACGTR 1 cut(s) 711
PshAI GACNNNNGTC 1 cut(s) 938
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspLI CGTACG 1 cut(s) 711
PspN4I GGNNCC 3 cut(s) 6, 324, 598
PspPI GGNCC 3 cut(s) 323, 350, 559
PvuII CAGCTG 1 cut(s) 965
RsaI GTAC 4 cut(s) 422, 713, 807, 871
RsaNI GTAC 4 cut(s) 421, 712, 806, 870
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 3 cut(s) 417, 533, 647
SatI GCNGC 1 cut(s) 963
Sau96I GGNCC 3 cut(s) 323, 350, 559
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 2 cut(s) 310, 631
SduI GDGCHC 3 cut(s) 70, 81, 264
SfaNI GCATC 2 cut(s) 49, 547
SfcI CTRYAG 2 cut(s) 574, 747
SinI GGWCC 3 cut(s) 323, 350, 559
SmlI CTYRAG 3 cut(s) 148, 416, 532
SmoI CTYRAG 3 cut(s) 148, 416, 532
Sse9I AATT 7 cut(s) 129, 354, 359, 470, 513, 613, 873
SsiI CCGC 2 cut(s) 298, 755
SspMI CTAG 3 cut(s) 438, 500, 890
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 2 cut(s) 308, 629
StyI CCWWGG 2 cut(s) 249, 274
TaaI ACNGT 2 cut(s) 107, 208
TaiI ACGT 1 cut(s) 713
TasI AATT 7 cut(s) 129, 354, 359, 470, 513, 613, 873
TatI WGTACW 2 cut(s) 420, 805
TfiI GAWTC 2 cut(s) 664, 678
Tru1I TTAA 3 cut(s) 417, 533, 647
Tru9I TTAA 3 cut(s) 417, 533, 647
TscAI CASTG 2 cut(s) 110, 829
TseI GCWGC 1 cut(s) 962
TspDTI ATGAA 3 cut(s) 48, 473, 635
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 2 cut(s) 110, 829
Vha464I CTTAAG 2 cut(s) 416, 532
VpaK11BI GGWCC 3 cut(s) 323, 350, 559
XapI RAATTY 2 cut(s) 513, 613
XcmI CCANNNNNNNNNTGG 2 cut(s) 272, 316
XmiI GTMKAC 1 cut(s) 982
XspI CTAG 3 cut(s) 438, 500, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.