Rh5CG397100

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000597
Physical Location & Seq
Forward (+)
52677062 .. 52678535
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG397100.1

Sequence Viewer

Length: 828 bp
ATGGTGACAACAAGCTCGGTAGCTGCACATGTTCAAGATCAAGTAGTAGAGGACCATGCAAAGGTTGGCCAAGAAGCTCATGATGATGACCAACAGAAGCAACTTAATGCCGGGGCTCTTTTTGTTCTTAAATCCAAGGGATCATGGGTACACTGTGCTTATCACTTGACAACTTCAATCGTTGGTCCAGATCTTCTAAGTCTGCCATATGCTTTTGCCTTCCTCGGATGGACGACTGGGATTTTCTGTTTGGTTATTGGAGCATCAGTAACTTTCTATTCCTACAATTTAATCTCTCTAGTTCTTGAACACTATGCTCAATTGGGTCATCGCCATTTCCGATTCAGAGACCTCGCTCACGACATTCTAGGGCCGAAATGGTGTTGGTATTTTGTTGGACCAATTCAGTTTCTGGTATGCTATGGTGCTGTTGTTGCCTCTATTCTTTTGGGAGGACAATGCATGAAGTCAATTTACTTGCTATCAAGTCCAAATGGGAGTATGAAGCTTTATGAGTTTGTAATCATATTTGGATGCTTGATGCTGGTTTTGGCCCAAATCCCATCTTTTCACTCACTCAGGCACATTAACCTTGTGTCCATGCTTCTTGGCCTAGCCTATAGCGTTTGTGCCACTGCTGCTTGCGTCTACATTGGAAATTCTTCCAAAGGGTCCCAAAAGGACTATTCCTTGAAGAGTAGCACTGTAAGTCGCGTTTTTGGGATCTTTAATGCTAATGCCATCATTGCTACAATATATGGCAATGGCATTATTCCAGAAATTCAGGTTATTCTCAGCCTTGTTTTGGATTCAAATGCGATACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

275

Amino Acids

30.05

Weight (kDa)

7.14

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 46 - 262 1.6e-29 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 648
AccII CGCG 1 cut(s) 714
AclWI GGATC 2 cut(s) 148, 731
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 2 cut(s) 658, 780
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 61, 805
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 5 cut(s) 35, 177, 308, 694, 813
AluBI AGCT 4 cut(s) 15, 23, 77, 508
AluI AGCT 4 cut(s) 15, 23, 77, 508
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 2 cut(s) 148, 731
AlwNI CAGNNNCTG 1 cut(s) 412
AoxI GGCC 4 cut(s) 67, 371, 552, 610
ApeKI GCWGC 2 cut(s) 23, 638
ApoI RAATTY 2 cut(s) 658, 780
Asp700I GAANNNNTTC 1 cut(s) 661
AspS9I GGNCC 6 cut(s) 52, 185, 371, 398, 553, 672
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 4 cut(s) 52, 185, 398, 672
BalI TGGCCA 1 cut(s) 69
BanII GRGCYC 1 cut(s) 118
BarI GAAGNNNNNNTAC 2 cut(s) 458, 490
BbvI GCAGC 2 cut(s) 10, 625
BccI CCATC 3 cut(s) 222, 571, 749
BcnI CCSGG 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 342
BfaI CTAG 3 cut(s) 299, 368, 614
BfmI CTRYAG 1 cut(s) 619
BglII AGATCT 1 cut(s) 190
BisI GCNGC 2 cut(s) 24, 639
BlsI GCNGC 2 cut(s) 25, 640
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 4 cut(s) 52, 185, 398, 672
BmgT120I GGNCC 6 cut(s) 52, 185, 371, 398, 553, 672
BmiI GGNNCC 2 cut(s) 673, 674
BmrFI CCNGG 1 cut(s) 112
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 3 cut(s) 272, 524, 531
BmuI ACTGGG 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 3 cut(s) 111, 135, 223
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 805
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 2 cut(s) 744, 769
BseDI CCNNGG 3 cut(s) 111, 135, 223
BseGI GGATG 2 cut(s) 233, 539
BseLI CCNNNNNNNGG 2 cut(s) 61, 805
BseMI GCAATG 2 cut(s) 744, 769
BseMII CTCAG 2 cut(s) 592, 808
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 2 cut(s) 10, 625
BsgI GTGCAG 1 cut(s) 9
Bsh1236I CGCG 1 cut(s) 714
BshFI GGCC 4 cut(s) 69, 373, 554, 612
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 658
BslI CCNNNNNNNGG 2 cut(s) 61, 805
BsmAI GTCTC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 658
BsnI GGCC 4 cut(s) 69, 373, 554, 612
Bso31I GGTCTC 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 4 cut(s) 37, 140, 190, 723
BspANI GGCC 4 cut(s) 69, 373, 554, 612
BspCNI CTCAG 2 cut(s) 591, 807
BspFNI CGCG 1 cut(s) 714
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 673, 674
BspPI GGATC 2 cut(s) 148, 731
BspTNI GGTCTC 1 cut(s) 342
BsrDI GCAATG 2 cut(s) 744, 769
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 3 cut(s) 111, 135, 223
BssMI GATC 4 cut(s) 37, 140, 190, 723
BssT1I CCWWGG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 155, 706
Bst6I CTCTTC 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 643
BstDEI CTNAG 3 cut(s) 197, 578, 794
BstF5I GGATG 2 cut(s) 233, 539
BstFNI CGCG 1 cut(s) 714
BstKTI GATC 4 cut(s) 40, 143, 193, 726
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 4 cut(s) 37, 140, 190, 723
BstMWI GCNNNNNNNGC 3 cut(s) 434, 638, 746
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 619
BstUI CGCG 1 cut(s) 714
BstV1I GCAGC 2 cut(s) 10, 625
BstX2I RGATCY 2 cut(s) 190, 723
BstYI RGATCY 2 cut(s) 190, 723
BsuRI GGCC 4 cut(s) 69, 373, 554, 612
BtgZI GCGATG 1 cut(s) 314
BtsCI GGATG 2 cut(s) 233, 539
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 3 cut(s) 151, 633, 702
Cac8I GCNNGC 1 cut(s) 643
CaiI CAGNNNCTG 1 cut(s) 412
CciI TCATGA 1 cut(s) 79
Cfr13I GGNCC 6 cut(s) 52, 185, 371, 398, 553, 672
CseI GACGC 1 cut(s) 634
Csp6I GTAC 1 cut(s) 149
CviAII CATG 6 cut(s) 29, 56, 80, 144, 463, 601
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 3 cut(s) 197, 578, 794
DpnI GATC 4 cut(s) 39, 142, 192, 725
DpnII GATC 4 cut(s) 37, 140, 190, 723
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 689
EarI CTCTTC 1 cut(s) 689
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 342
Eco47I GGWCC 4 cut(s) 52, 185, 398, 672
EcoO109I RGGNCCY 1 cut(s) 672
EcoT14I CCWWGG 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 464
EcoT38I GRGCYC 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 6 cut(s) 32, 59, 83, 147, 466, 604
FaqI GGGAC 1 cut(s) 658
FatI CATG 6 cut(s) 28, 55, 79, 143, 462, 600
FauNDI CATATG 1 cut(s) 208
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 2 cut(s) 24, 639
FokI GGATG 2 cut(s) 240, 546
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 2 cut(s) 24, 639
FspBI CTAG 3 cut(s) 299, 368, 614
GluI GCNGC 2 cut(s) 24, 639
HaeIII GGCC 4 cut(s) 69, 373, 554, 612
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 634
Hin1II CATG 6 cut(s) 32, 59, 83, 147, 466, 604
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 2 cut(s) 342, 809
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 151, 649
Hpy188I TCNGA 3 cut(s) 227, 341, 347
Hpy188III TCNNGA 6 cut(s) 35, 80, 188, 305, 359, 776
Hpy8I GTNNAC 2 cut(s) 151, 649
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 155, 706
HpyCH4V TGCA 3 cut(s) 26, 59, 462
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 638, 746
HpyF3I CTNAG 3 cut(s) 197, 578, 794
Hsp92II CATG 6 cut(s) 32, 59, 83, 147, 466, 604
KflI GGGWCCC 1 cut(s) 672
Kzo9I GATC 4 cut(s) 37, 140, 190, 723
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 8 cut(s) 124, 201, 222, 398, 530, 565, 770, 789
Lsp1109I GCAGC 2 cut(s) 10, 625
LweI GCATC 3 cut(s) 272, 524, 531
MaeI CTAG 3 cut(s) 299, 368, 614
MaeIII GTNAC 2 cut(s) 4, 268
MalI GATC 4 cut(s) 39, 142, 192, 725
MboI GATC 4 cut(s) 37, 140, 190, 723
MboII GAAGA 3 cut(s) 185, 654, 706
MfeI CAATTG 1 cut(s) 320
MflI RGATCY 2 cut(s) 190, 723
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 6 cut(s) 286, 320, 402, 471, 658, 780
MluNI TGGCCA 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 5 cut(s) 43, 233, 362, 446, 448
Mox20I TGGCCA 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 464
MroXI GAANNNNTTC 1 cut(s) 661
MscI TGGCCA 1 cut(s) 69
MseI TTAA 5 cut(s) 105, 129, 290, 588, 729
MslI CAYNNNNRTG 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 69
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 112
MunI CAATTG 1 cut(s) 320
MvnI CGCG 1 cut(s) 714
MwoI GCNNNNNNNGC 3 cut(s) 434, 638, 746
NciI CCSGG 1 cut(s) 112
NdeI CATATG 1 cut(s) 208
NdeII GATC 4 cut(s) 37, 140, 190, 723
NlaIII CATG 6 cut(s) 32, 59, 83, 147, 466, 604
NlaIV GGNNCC 2 cut(s) 673, 674
NmuCI GTSAC 1 cut(s) 4
NsiI ATGCAT 1 cut(s) 464
NspI RCATGY 1 cut(s) 32
PagI TCATGA 1 cut(s) 79
PciI ACATGT 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 661
PfeI GAWTC 2 cut(s) 342, 809
PkrI GCNGC 2 cut(s) 25, 640
PpuMI RGGWCCY 1 cut(s) 672
PscI ACATGT 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 672
PspN4I GGNNCC 2 cut(s) 673, 674
PspPI GGNCC 6 cut(s) 52, 185, 371, 398, 553, 672
PspPPI RGGWCCY 1 cut(s) 672
PstNI CAGNNNCTG 1 cut(s) 412
PsuI RGATCY 2 cut(s) 190, 723
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 5 cut(s) 105, 129, 290, 588, 729
SatI GCNGC 2 cut(s) 24, 639
Sau3AI GATC 4 cut(s) 37, 140, 190, 723
Sau96I GGNCC 6 cut(s) 52, 185, 371, 398, 553, 672
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 1 cut(s) 118
SetI ASST 8 cut(s) 17, 25, 66, 79, 354, 510, 594, 789
SfaNI GCATC 3 cut(s) 272, 524, 531
SfcI CTRYAG 1 cut(s) 619
SinI GGWCC 4 cut(s) 52, 185, 398, 672
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 6 cut(s) 286, 320, 402, 471, 658, 780
SspMI CTAG 3 cut(s) 299, 368, 614
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 155, 706
TasI AATT 6 cut(s) 286, 320, 402, 471, 658, 780
TfiI GAWTC 2 cut(s) 342, 809
Tru1I TTAA 5 cut(s) 105, 129, 290, 588, 729
Tru9I TTAA 5 cut(s) 105, 129, 290, 588, 729
TscAI CASTG 3 cut(s) 158, 640, 709
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 2 cut(s) 23, 638
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 479, 518
TspRI CASTG 3 cut(s) 158, 640, 709
VpaK11BI GGWCC 4 cut(s) 52, 185, 398, 672
XapI RAATTY 2 cut(s) 658, 780
XceI RCATGY 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 661
XspI CTAG 3 cut(s) 299, 368, 614
Zsp2I ATGCAT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.