RLG00000029458

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000597
Physical Location & Seq
Reverse (-)
39017547 .. 39019581
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029458

Sequence Viewer

Length: 1332 bp
ATGGAGCCAGTAGTAGTGGCAACAGAGGTAGATGAAGCCAACAGTCCAAAGAAACTTGATGCTGGAGGGTCATGGTTGCACTGTGGATATCACCTGACATCTTCAATTGTAGCTCCTGCACTCTTGATTCTTCCCTATGCACTTTCCCTGATGGGTTGGTTTGCCGGTGTTATATGCCTGACTGTTTCAGCTCTGGTAACTTTCTATTCCTACAACCTTCTGTCCTTGGTTTTAGAGCACCATGCTCACCTTGGTCAGCGCCAGCTTCGCTTCCGCGACATGGCCAGGGATATTTTGGGACCAAGATGGGGAAGATATTTTGTAGGTCCAATTCAATTTGGCCTATGCTATGGTGCAGTTATAGCTTGCATTCTTTTAGGAGGACAGAGCCTTAAGTACATATTTCTGCTCTCTAGTTCAAGGCCGGAGACCATGAAACTCTACCAATTTGTTATTATATTTGGTGTCCTAATGCTAGTGTTGGCACAAATTCCATCATTCCACTCCTTAAGGCATCTCAACCTTGTCTCTCTGGTCCTTTCTCTTGCCTATAGCGCCTGTGCCACAGCCGGTTCCATATACATTGGAAATTCCATGAATGCTCCTAGGAAGGACTATTCATTAAATGAAAGCAAACAGAATCTCATTTTTGGATCCTTCAATGCTATTTCAATCATTGCTACCACGTACGGAAATGGCATTATTCCTGAAATACAGGCTACTATAGCACCGCCGGTCAAAGGAAAAATGTTCAAGGGATTATGTGTATGTTATGCTGTTGTACTTTCAACATTTTTCAGTGTTGCTATATCGGGATATTGGGCATTTGGTAATCAGGCCAAAGGTACAATTTTACTCAACTTTCTAGTCGATGAGAAGCCTCTGTTGCCGACTTGGGTTCTCTTGATGACTAATGTCTTCACCTTCTTGCAAGTAGCAGCTGTTAGTGTGGTTAACTTACAACCAACAAATGAAGTGCTCGAACGCAAGTTTGTCAATGCCAAGATTGATCAGTTCTCTGTTCGAAATGTAGTGCCTAGGTTGGTTTATCGATCATTGTCTGTCGTGATAGCCACAACAGTTGCAGCTCTGTTTCCTTTCTTTGGAGACATCAATGCTTTAATAGGAGCATTTGGTTGCATTCCTCTCGACTTCATTTTGCCAGTGGTGTTCTACAATGTTGTATTCAAGCCATCCAAGTACAGCCTTCTTTTCTGGGGAAACACAATAATTGCTTCAACCTTTTCAGCATTAGGAGTGTTGGGGGCAATATCTTCAATCCGTCAAATAATTCTTGATGCCAGCACGTACAGTTTGTTTGCTAACGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

444

Amino Acids

48.48

Weight (kDa)

9.09

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 22 - 431 2.2e-69 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 276
AciI CCGC 2 cut(s) 274, 731
AclWI GGATC 2 cut(s) 648, 661
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 2 cut(s) 489, 589
AfaI GTAC 6 cut(s) 398, 689, 783, 847, 1202, 1310
AfiI CCNNNNNNNGG 4 cut(s) 280, 308, 740, 1103
AflII CTTAAG 2 cut(s) 392, 508
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 6 cut(s) 113, 191, 265, 365, 941, 1088
AluI AGCT 6 cut(s) 113, 191, 265, 365, 941, 1088
Alw21I GWGCWC 2 cut(s) 240, 981
Alw26I GTCTC 3 cut(s) 422, 532, 1101
AlwI GGATC 2 cut(s) 648, 661
AoxI GGCC 4 cut(s) 282, 340, 422, 837
ApeKI GCWGC 2 cut(s) 938, 1085
ApoI RAATTY 2 cut(s) 489, 589
AspA2I CCTAGG 2 cut(s) 605, 1037
AspLEI GCGC 2 cut(s) 261, 557
AspS9I GGNCC 3 cut(s) 299, 326, 535
AsuHPI GGTGA 3 cut(s) 83, 239, 913
AsuII TTCGAA 1 cut(s) 1024
AvaII GGWCC 3 cut(s) 299, 326, 535
AvrII CCTAGG 2 cut(s) 605, 1037
BalI TGGCCA 1 cut(s) 284
BamHI GGATCC 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 910
Bbv12I GWGCWC 2 cut(s) 240, 981
BbvI GCAGC 2 cut(s) 950, 1097
BccI CCATC 4 cut(s) 145, 300, 502, 1201
BcgI CGANNNNNNTGC 2 cut(s) 1129, 1163
BciT130I CCWGG 1 cut(s) 286
BclI TGATCA 1 cut(s) 1009
BcoDI GTCTC 3 cut(s) 422, 532, 1101
BfaI CTAG 5 cut(s) 414, 476, 606, 866, 1038
BfmI CTRYAG 2 cut(s) 550, 723
BfoI RGCGCY 2 cut(s) 262, 558
BfrI CTTAAG 2 cut(s) 392, 508
BisI GCNGC 2 cut(s) 939, 1086
BlnI CCTAGG 2 cut(s) 605, 1037
BlsI GCNGC 2 cut(s) 940, 1087
Bme1390I CCNGG 1 cut(s) 286
Bme18I GGWCC 3 cut(s) 299, 326, 535
BmgT120I GGNCC 3 cut(s) 299, 326, 535
BmiI GGNNCC 4 cut(s) 6, 300, 574, 655
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 3 cut(s) 49, 523, 1288
BoxI GACNNNNGTC 1 cut(s) 914
BpiI GAAGAC 1 cut(s) 910
BpmI CTGGAG 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 1024
Bsa29I ATCGAT 1 cut(s) 1051
BsaAI YACGTR 2 cut(s) 687, 1308
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 5 cut(s) 225, 250, 285, 605, 1037
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 308, 740, 1103
Bse118I RCCGGY 3 cut(s) 164, 569, 733
Bse1I ACTGG 2 cut(s) 8, 1163
Bse3DI GCAATG 1 cut(s) 675
BseBI CCWGG 1 cut(s) 286
BseCI ATCGAT 1 cut(s) 1051
BseDI CCNNGG 5 cut(s) 225, 250, 285, 605, 1037
BseGI GGATG 1 cut(s) 1193
BseLI CCNNNNNNNGG 4 cut(s) 280, 308, 740, 1103
BseMI GCAATG 1 cut(s) 675
BseNI ACTGG 2 cut(s) 8, 1163
BseXI GCAGC 2 cut(s) 950, 1097
BsgI GTGCAG 2 cut(s) 102, 375
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 4 cut(s) 284, 342, 424, 839
BshVI ATCGAT 1 cut(s) 1051
BsiHKAI GWGCWC 2 cut(s) 240, 981
BsiSI CCGG 4 cut(s) 165, 425, 570, 734
BsiWI CGTACG 1 cut(s) 687
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 4 cut(s) 280, 308, 740, 1103
BsmAI GTCTC 3 cut(s) 422, 532, 1101
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 3 cut(s) 369, 604, 1140
BsnI GGCC 4 cut(s) 284, 342, 424, 839
Bso31I GGTCTC 1 cut(s) 422
Bsp119I TTCGAA 1 cut(s) 1024
Bsp1286I GDGCHC 2 cut(s) 240, 981
Bsp143I GATC 3 cut(s) 653, 1009, 1052
BspACI CCGC 2 cut(s) 274, 731
BspANI GGCC 4 cut(s) 284, 342, 424, 839
BspDI ATCGAT 1 cut(s) 1051
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 4 cut(s) 6, 300, 574, 655
BspPI GGATC 2 cut(s) 648, 661
BspT104I TTCGAA 1 cut(s) 1024
BspTI CTTAAG 2 cut(s) 392, 508
BspTNI GGTCTC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 675
BsrFI RCCGGY 3 cut(s) 164, 569, 733
BsrI ACTGG 2 cut(s) 8, 1163
BssAI RCCGGY 3 cut(s) 164, 569, 733
BssECI CCNNGG 5 cut(s) 225, 250, 285, 605, 1037
BssMI GATC 3 cut(s) 653, 1009, 1052
BssT1I CCWWGG 4 cut(s) 225, 250, 605, 1037
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 5 cut(s) 44, 83, 184, 1081, 1313
BstAFI CTTAAG 2 cut(s) 392, 508
BstBAI YACGTR 2 cut(s) 687, 1308
BstBI TTCGAA 1 cut(s) 1024
BstC8I GCNNGC 3 cut(s) 263, 367, 1303
BstF5I GGATG 1 cut(s) 1193
BstFNI CGCG 1 cut(s) 276
BstH2I RGCGCY 2 cut(s) 262, 558
BstHHI GCGC 2 cut(s) 261, 557
BstKTI GATC 3 cut(s) 656, 1012, 1055
BstMAI GTCTC 3 cut(s) 422, 532, 1101
BstMBI GATC 3 cut(s) 653, 1009, 1052
BstMWI GCNNNNNNNGC 5 cut(s) 267, 362, 554, 725, 886
BstNI CCWGG 1 cut(s) 286
BstPAI GACNNNNGTC 1 cut(s) 914
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 2 cut(s) 550, 723
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 950, 1097
BstV2I GAAGAC 1 cut(s) 910
BstX2I RGATCY 1 cut(s) 653
BstYI RGATCY 1 cut(s) 653
Bsu15I ATCGAT 1 cut(s) 1051
BsuRI GGCC 4 cut(s) 284, 342, 424, 839
BsuTUI ATCGAT 1 cut(s) 1051
BtsCI GGATG 1 cut(s) 1193
BtsIMutI CAGTG 3 cut(s) 79, 805, 1170
Cac8I GCNNGC 3 cut(s) 263, 367, 1303
CfoI GCGC 2 cut(s) 261, 557
Cfr10I RCCGGY 3 cut(s) 164, 569, 733
Cfr13I GGNCC 3 cut(s) 299, 326, 535
ClaI ATCGAT 1 cut(s) 1051
Csp6I GTAC 6 cut(s) 397, 688, 782, 846, 1201, 1309
CspCI CAANNNNNGTGG 2 cut(s) 1063, 1098
CviAII CATG 5 cut(s) 72, 242, 280, 433, 595
CviQI GTAC 6 cut(s) 397, 688, 782, 846, 1201, 1309
DpnI GATC 3 cut(s) 655, 1011, 1054
DpnII GATC 3 cut(s) 653, 1009, 1052
EaeI YGGCCR 1 cut(s) 282
Eco130I CCWWGG 4 cut(s) 225, 250, 605, 1037
Eco31I GGTCTC 1 cut(s) 422
Eco32I GATATC 1 cut(s) 89
Eco47I GGWCC 3 cut(s) 299, 326, 535
EcoRII CCWGG 1 cut(s) 284
EcoRV GATATC 1 cut(s) 89
EcoT14I CCWWGG 4 cut(s) 225, 250, 605, 1037
ErhI CCWWGG 4 cut(s) 225, 250, 605, 1037
FaeI CATG 5 cut(s) 75, 245, 283, 436, 598
FaqI GGGAC 1 cut(s) 312
FatI CATG 5 cut(s) 71, 241, 279, 432, 594
FbaI TGATCA 1 cut(s) 1009
Fnu4HI GCNGC 2 cut(s) 939, 1086
FokI GGATG 1 cut(s) 1180
Fsp4HI GCNGC 2 cut(s) 939, 1086
FspBI CTAG 5 cut(s) 414, 476, 606, 866, 1038
GlaI GCGC 2 cut(s) 260, 556
GluI GCNGC 2 cut(s) 939, 1086
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 2 cut(s) 262, 558
HaeIII GGCC 4 cut(s) 284, 342, 424, 839
HapII CCGG 4 cut(s) 165, 425, 570, 734
HhaI GCGC 2 cut(s) 261, 557
Hin1II CATG 5 cut(s) 75, 245, 283, 436, 598
Hin6I GCGC 2 cut(s) 259, 555
HinP1I GCGC 2 cut(s) 259, 555
HincII GTYRAC 1 cut(s) 955
HindII GTYRAC 1 cut(s) 955
HinfI GANTC 2 cut(s) 127, 640
HpaI GTTAAC 1 cut(s) 955
HpaII CCGG 4 cut(s) 165, 425, 570, 734
HphI GGTGA 3 cut(s) 83, 239, 913
Hpy166II GTNNAC 1 cut(s) 955
Hpy188III TCNNGA 7 cut(s) 124, 707, 813, 904, 1066, 1148, 1295
Hpy8I GTNNAC 1 cut(s) 955
HpyAV CCTTC 5 cut(s) 227, 604, 667, 934, 1217
HpyCH4III ACNGT 5 cut(s) 44, 83, 184, 1081, 1313
HpyCH4IV ACGT 3 cut(s) 686, 1307, 1326
HpyCH4V TGCA 8 cut(s) 79, 119, 140, 356, 369, 931, 1085, 1140
HpyF10VI GCNNNNNNNGC 5 cut(s) 267, 362, 554, 725, 886
HpySE526I ACGT 3 cut(s) 686, 1307, 1326
Hsp92II CATG 5 cut(s) 75, 245, 283, 436, 598
HspAI GCGC 2 cut(s) 259, 555
Ksp22I TGATCA 1 cut(s) 1009
KspAI GTTAAC 1 cut(s) 955
Kzo9I GATC 3 cut(s) 653, 1009, 1052
LmnI GCTCC 4 cut(s) 4, 118, 607, 1127
Lsp1109I GCAGC 2 cut(s) 950, 1097
LweI GCATC 3 cut(s) 49, 523, 1288
MaeI CTAG 5 cut(s) 414, 476, 606, 866, 1038
MaeII ACGT 3 cut(s) 686, 1307, 1326
MaeIII GTNAC 1 cut(s) 196
MalI GATC 3 cut(s) 655, 1011, 1054
MboI GATC 3 cut(s) 653, 1009, 1052
MboII GAAGA 5 cut(s) 93, 122, 324, 910, 1266
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 1 cut(s) 653
MhlI GDGCHC 2 cut(s) 240, 981
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 9 cut(s) 105, 330, 335, 446, 489, 589, 849, 1230, 1290
MluNI TGGCCA 1 cut(s) 284
MnlI CCTC 5 cut(s) 19, 59, 374, 891, 1155
Mox20I TGGCCA 1 cut(s) 284
MscI TGGCCA 1 cut(s) 284
MseI TTAA 5 cut(s) 393, 509, 623, 954, 1121
Msp20I TGGCCA 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 941
MspCI CTTAAG 2 cut(s) 392, 508
MspI CCGG 4 cut(s) 165, 425, 570, 734
MspR9I CCNGG 1 cut(s) 286
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 3 cut(s) 369, 604, 1140
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 5 cut(s) 267, 362, 554, 725, 886
NdeII GATC 3 cut(s) 653, 1009, 1052
NlaIII CATG 5 cut(s) 75, 245, 283, 436, 598
NlaIV GGNNCC 4 cut(s) 6, 300, 574, 655
NspV TTCGAA 1 cut(s) 1024
PctI GAATGC 3 cut(s) 369, 604, 1140
PfeI GAWTC 2 cut(s) 127, 640
Pfl23II CGTACG 1 cut(s) 687
PkrI GCNGC 2 cut(s) 940, 1087
Ppu21I YACGTR 2 cut(s) 687, 1308
PshAI GACNNNNGTC 1 cut(s) 914
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspLI CGTACG 1 cut(s) 687
PspN4I GGNNCC 4 cut(s) 6, 300, 574, 655
PspPI GGNCC 3 cut(s) 299, 326, 535
PsuI RGATCY 1 cut(s) 653
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 6 cut(s) 398, 689, 783, 847, 1202, 1310
RsaNI GTAC 6 cut(s) 397, 688, 782, 846, 1201, 1309
SaqAI TTAA 5 cut(s) 393, 509, 623, 954, 1121
SatI GCNGC 2 cut(s) 939, 1086
Sau3AI GATC 3 cut(s) 653, 1009, 1052
Sau96I GGNCC 3 cut(s) 299, 326, 535
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 2 cut(s) 240, 981
SfaNI GCATC 3 cut(s) 49, 523, 1288
SfcI CTRYAG 2 cut(s) 550, 723
SfuI TTCGAA 1 cut(s) 1024
SinI GGWCC 3 cut(s) 299, 326, 535
SmlI CTYRAG 2 cut(s) 392, 508
SmoI CTYRAG 2 cut(s) 392, 508
Sse9I AATT 9 cut(s) 105, 330, 335, 446, 489, 589, 849, 1230, 1290
SsiI CCGC 2 cut(s) 274, 731
SspMI CTAG 5 cut(s) 414, 476, 606, 866, 1038
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 4 cut(s) 225, 250, 605, 1037
TaaI ACNGT 5 cut(s) 44, 83, 184, 1081, 1313
TaiI ACGT 3 cut(s) 689, 1310, 1329
TaqI TCGA 5 cut(s) 870, 981, 1024, 1051, 1149
TasI AATT 9 cut(s) 105, 330, 335, 446, 489, 589, 849, 1230, 1290
TatI WGTACW 3 cut(s) 396, 781, 1200
TfiI GAWTC 2 cut(s) 127, 640
Tru1I TTAA 5 cut(s) 393, 509, 623, 954, 1121
Tru9I TTAA 5 cut(s) 393, 509, 623, 954, 1121
TscAI CASTG 3 cut(s) 86, 805, 1170
TseI GCWGC 2 cut(s) 938, 1085
TspDTI ATGAA 7 cut(s) 48, 449, 609, 611, 642, 987, 1144
TspGWI ACGGA 2 cut(s) 705, 1271
TspRI CASTG 3 cut(s) 86, 805, 1170
Vha464I CTTAAG 2 cut(s) 392, 508
VpaK11BI GGWCC 3 cut(s) 299, 326, 535
XapI RAATTY 2 cut(s) 489, 589
XcmI CCANNNNNNNNNTGG 2 cut(s) 248, 292
XmaJI CCTAGG 2 cut(s) 605, 1037
XspI CTAG 5 cut(s) 414, 476, 606, 866, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.