Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

2794915 .. 2796572

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTTAGAGAGTTCAGTAAAGAAGAAGAACACTCAGATCAACCCGAAACGCCTCTCGGGTCTAAGCGCAAGACCTCAGAAACCAGCGAGAGTTCCACCAAAAGGGCACGAACCGTTGAATCCAAAACGGGTCACGGGTCACGGGTCTAACAACCTTAAGATCCGAATTGGGTCCGGAACAAACAGTGGGTCGAAGGCTAAGAGGGTGAAGAAGGAGGTCCCTGACTGTGAGTTGGTGAAGCCTCAAGATTTGGAGGATGGGGAGTTTGATATTGAGCCGGGTTGGTACTTGGTGGGAAGCAAAATGGTCACTGCGGTTTCGACTATTGGGCGGTTCCCAATGGAATGGGCAAAAAGTGTTGTTCCTCTTGTGGATTCTGGTAAGGTTAAAGTTCTTGGGCGGTTTATGGGTGCGCCCAAGTGCCTATCTATGACGCAAGATATTGTGTTGTCTGTGAGTTTTTTTATCCACCGTTCAGTTTTCACGGATGGGGATAAGAAGAGGCTACATGCTTCATCTTTCAATAAGTATGCAGTTCCTCCTATCCTCGGTGTCTTGAATTTGCTAAAAATCGAACCGTTTGAGAAGGCTGAATTCACTGCTGAAGAACTTGATTGCGCTTTGAATCCTCAATTATTTTCTGCTTTGACTATAGTATCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

222

Amino Acids

24.28

Weight (kDa)

9.68

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	173
AciI	CCGC	3 cut(s)	314, 331, 400
AclWI	GGATC	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	559, 593
AcuI	CTGAAG	1 cut(s)	624
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	101, 548
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	118, 523, 559, 625
AlwI	GGATC	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	55
Aor13HI	TCCGGA	1 cut(s)	173
ApoI	RAATTY	2 cut(s)	559, 593
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	3 cut(s)	68, 415, 620
AspS9I	GGNCC	2 cut(s)	171, 217
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	217, 247
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	171, 217
BaeGI	GKGCMC	1 cut(s)	108
BaeI	ACNNNNGTAYC	1 cut(s)	639
BccI	CCATC	2 cut(s)	251, 482
BcnI	CCSGG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	651
BfrI	CTTAAG	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	2 cut(s)	171, 217
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	171, 217
BmiI	GGNNCC	3 cut(s)	172, 219, 335
BmrFI	CCNGG	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	547
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 548
BseAI	TCCGGA	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	2 cut(s)	262, 493
BseLI	CCNNNNNNNGG	2 cut(s)	101, 548
BseMII	CTCAG	2 cut(s)	47, 89
BseSI	GKGCMC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	174, 278
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	101, 548
BsmFI	GGGAC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp13I	TCCGGA	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	36, 159
BspACI	CCGC	3 cut(s)	314, 331, 400
BspCNI	CTCAG	2 cut(s)	46, 88
BspEI	TCCGGA	1 cut(s)	173
BspLI	GGNNCC	3 cut(s)	172, 219, 335
BspPI	GGATC	1 cut(s)	154
BspTI	CTTAAG	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	2 cut(s)	36, 159
Bst4CI	ACNGT	5 cut(s)	114, 185, 227, 473, 579
Bst6I	CTCTTC	1 cut(s)	494
BstAFI	CTTAAG	1 cut(s)	155
BstDEI	CTNAG	4 cut(s)	33, 62, 75, 198
BstF5I	GGATG	2 cut(s)	262, 493
BstHHI	GCGC	3 cut(s)	68, 415, 620
BstKTI	GATC	2 cut(s)	39, 162
BstMBI	GATC	2 cut(s)	36, 159
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	651
BstSLI	GKGCMC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	159
BstXI	CCANNNNNNTGG	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	262, 493
BtsI	GCAGTG	2 cut(s)	309, 597
BtsIMutI	CAGTG	3 cut(s)	190, 309, 597
CfoI	GCGC	3 cut(s)	68, 415, 620
Cfr13I	GGNCC	2 cut(s)	171, 217
CseI	GACGC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	509
CviJI	RGCY	5 cut(s)	197, 241, 277, 505, 590
CviKI_1	RGCY	5 cut(s)	197, 241, 277, 505, 590
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	4 cut(s)	33, 62, 75, 198
DpnI	GATC	2 cut(s)	38, 161
DpnII	GATC	2 cut(s)	36, 159
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
Eco47I	GGWCC	2 cut(s)	171, 217
Eco57I	CTGAAG	1 cut(s)	624
Eco88I	CYCGRG	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	593
FaeI	CATG	1 cut(s)	512
FaiI	YATR	5 cut(s)	407, 431, 510, 531, 653
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	508
FokI	GGATG	2 cut(s)	269, 500
GlaI	GCGC	3 cut(s)	67, 414, 619
HapII	CCGG	2 cut(s)	174, 278
HgaI	GACGC	1 cut(s)	442
HhaI	GCGC	3 cut(s)	68, 415, 620
Hin1II	CATG	1 cut(s)	512
Hin6I	GCGC	3 cut(s)	66, 413, 618
HinP1I	GCGC	3 cut(s)	66, 413, 618
HinfI	GANTC	3 cut(s)	118, 374, 625
HpaII	CCGG	2 cut(s)	174, 278
HphI	GGTGA	2 cut(s)	217, 247
Hpy188I	TCNGA	3 cut(s)	36, 78, 164
Hpy188III	TCNNGA	3 cut(s)	174, 245, 556
HpyAV	CCTTC	3 cut(s)	187, 205, 580
HpyCH4III	ACNGT	5 cut(s)	114, 185, 227, 473, 579
HpyCH4V	TGCA	1 cut(s)	533
HpyF3I	CTNAG	4 cut(s)	33, 62, 75, 198
Hsp92II	CATG	1 cut(s)	512
HspAI	GCGC	3 cut(s)	66, 413, 618
Kpn2I	TCCGGA	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	36, 159
LpnPI	CCDG	5 cut(s)	96, 187, 234, 291, 363
MaeIII	GTNAC	3 cut(s)	130, 137, 307
MalI	GATC	2 cut(s)	38, 161
MboI	GATC	2 cut(s)	36, 159
MboII	GAAGA	5 cut(s)	34, 37, 220, 511, 617
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	4 cut(s)	165, 559, 593, 632
MroI	TCCGGA	1 cut(s)	173
MseI	TTAA	2 cut(s)	156, 387
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	2 cut(s)	174, 278
MspR9I	CCNGG	1 cut(s)	279
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	2 cut(s)	36, 159
NlaIII	CATG	1 cut(s)	512
NlaIV	GGNNCC	3 cut(s)	172, 219, 335
NmuCI	GTSAC	3 cut(s)	130, 137, 307
NspI	RCATGY	1 cut(s)	512
PfeI	GAWTC	3 cut(s)	118, 374, 625
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
PspN4I	GGNNCC	3 cut(s)	172, 219, 335
PspPI	GGNCC	2 cut(s)	171, 217
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	156, 387
Sau3AI	GATC	2 cut(s)	36, 159
Sau96I	GGNCC	2 cut(s)	171, 217
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	4 cut(s)	76, 156, 219, 387
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	2 cut(s)	171, 217
SmlI	CTYRAG	2 cut(s)	155, 243
SmoI	CTYRAG	2 cut(s)	155, 243
Sse9I	AATT	4 cut(s)	165, 559, 593, 632
SsiI	CCGC	3 cut(s)	314, 331, 400
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	5 cut(s)	114, 185, 227, 473, 579
TaqI	TCGA	3 cut(s)	191, 320, 573
TasI	AATT	4 cut(s)	165, 559, 593, 632
TfiI	GAWTC	3 cut(s)	118, 374, 625
Tru1I	TTAA	2 cut(s)	156, 387
Tru9I	TTAA	2 cut(s)	156, 387
TscAI	CASTG	3 cut(s)	190, 316, 604
TseFI	GTSAC	3 cut(s)	130, 137, 307
Tsp45I	GTSAC	3 cut(s)	130, 137, 307
TspDTI	ATGAA	1 cut(s)	504
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	3 cut(s)	190, 316, 604
Vha464I	CTTAAG	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	171, 217
XapI	RAATTY	2 cut(s)	559, 593
XceI	RCATGY	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.