SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UBA_RAD5A | PF24559 | 259 - 298 | 3.3e-11 | DNA repair protein RAD5A UBA domain |
| HIRAN | PF08797 | 357 - 446 | 1.8e-11 | HIRAN domain |
| SNF2-rel_dom | PF00176 | 579 - 939 | 1.4e-73 | SNF2-related domain |
| DEAD | PF00270 | 648 - 811 | 1.8e-06 | DEAD/DEAH box helicase |
| zf-C3HC4_3 | PF13920 | 1000 - 1048 | 3.7e-08 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_2 | PF13639 | 1002 - 1043 | 3.5e-06 | Ring finger domain |
| zf-C3HC4_2 | PF13923 | 1002 - 1042 | 4.3e-06 | Zinc finger, C3HC4 type (RING finger) |
| zf-C3HC4 | PF00097 | 1003 - 1042 | 1.2e-07 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_UBOX | PF13445 | 1003 - 1040 | 2e-07 | RING-type zinc-finger |
| zf-C3HC4_4 | PF15227 | 1003 - 1042 | 1.7e-06 | zinc finger of C3HC4-type, RING |
| Helicase_C | PF00271 | 1078 - 1187 | 1.9e-23 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3497 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3107 |
| AccI | GTMKAC | 1 cut(s) | 1116 |
| AccII | CGCG | 1 cut(s) | 144 |
| AccIII | TCCGGA | 2 cut(s) | 460, 619 |
| AclWI | GGATC | 9 cut(s) | 261, 355, 427, 2522, 3029, 3316, 3318, 3497, 3510 |
| AcoI | YGGCCR | 1 cut(s) | 119 |
| AcsI | RAATTY | 5 cut(s) | 33, 224, 824, 1153, 1895 |
| AcuI | CTGAAG | 1 cut(s) | 3239 |
| AfaI | GTAC | 5 cut(s) | 1257, 1711, 2217, 2873, 3571 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 626, 643, 1104, 2078, 2122, 2700, 3107, 3181 |
| AgeI | ACCGGT | 2 cut(s) | 83, 346 |
| AjnI | CCWGG | 8 cut(s) | 315, 390, 468, 498, 1993, 2292, 3180, 3635 |
| AleI | CACNNNNGTG | 1 cut(s) | 2178 |
| Alw21I | GWGCWC | 6 cut(s) | 83, 91, 242, 2362, 3664, 3705 |
| Alw26I | GTCTC | 4 cut(s) | 100, 163, 1523, 2557 |
| AlwI | GGATC | 9 cut(s) | 261, 355, 427, 2522, 3029, 3316, 3318, 3497, 3510 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2672, 3266, 3578 |
| Ama87I | CYCGRG | 1 cut(s) | 578 |
| Aor13HI | TCCGGA | 2 cut(s) | 460, 619 |
| AoxI | GGCC | 7 cut(s) | 119, 1010, 1794, 2510, 2553, 2612, 3633 |
| ApoI | RAATTY | 5 cut(s) | 33, 224, 824, 1153, 1895 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3289, 3321 |
| AseI | ATTAAT | 2 cut(s) | 879, 2501 |
| AsiGI | ACCGGT | 2 cut(s) | 83, 346 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 150, 1536, 1585, 1871, 3249 |
| AspLEI | GCGC | 2 cut(s) | 144, 3056 |
| AspS9I | GGNCC | 5 cut(s) | 388, 394, 1795, 2613, 3110 |
| AsuHPI | GGTGA | 9 cut(s) | 232, 973, 1009, 1018, 1346, 1432, 2870, 3005, 3281 |
| AvaI | CYCGRG | 1 cut(s) | 578 |
| AvaII | GGWCC | 3 cut(s) | 388, 394, 3110 |
| BaeGI | GKGCMC | 1 cut(s) | 844 |
| BamHI | GGATCC | 1 cut(s) | 3502 |
| BanII | GRGCYC | 4 cut(s) | 1613, 2151, 3664, 3705 |
| BauI | CACGAG | 1 cut(s) | 90 |
| BbsI | GAAGAC | 4 cut(s) | 1964, 2334, 3071, 3103 |
| Bbv12I | GWGCWC | 6 cut(s) | 83, 91, 242, 2362, 3664, 3705 |
| BciT130I | CCWGG | 8 cut(s) | 317, 392, 470, 500, 1995, 2294, 3182, 3637 |
| BciVI | GTATCC | 2 cut(s) | 2177, 2993 |
| BclI | TGATCA | 2 cut(s) | 925, 2722 |
| BcoDI | GTCTC | 4 cut(s) | 100, 163, 1523, 2557 |
| BfaI | CTAG | 5 cut(s) | 260, 1397, 1934, 3105, 3690 |
| BfmI | CTRYAG | 3 cut(s) | 870, 2253, 2440 |
| BfuI | GTATCC | 2 cut(s) | 2177, 2993 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 256 |
| BglII | AGATCT | 2 cut(s) | 171, 2434 |
| BlpI | GCTNAGC | 2 cut(s) | 278, 504 |
| Bme1390I | CCNGG | 8 cut(s) | 317, 392, 470, 500, 1995, 2294, 3182, 3637 |
| Bme18I | GGWCC | 3 cut(s) | 388, 394, 3110 |
| BmeT110I | CYCGRG | 1 cut(s) | 578 |
| BmgT120I | GGNCC | 5 cut(s) | 388, 394, 1795, 2613, 3110 |
| BmrFI | CCNGG | 8 cut(s) | 317, 392, 470, 500, 1995, 2294, 3182, 3637 |
| BmsI | GCATC | 7 cut(s) | 261, 928, 1308, 1390, 1930, 2659, 3491 |
| BpiI | GAAGAC | 4 cut(s) | 1964, 2334, 3071, 3103 |
| BpmI | CTGGAG | 1 cut(s) | 1476 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2361 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 278, 504 |
| BpuEI | CTTGAG | 1 cut(s) | 3070 |
| Bsa29I | ATCGAT | 2 cut(s) | 269, 1416 |
| BsaBI | GATNNNNATC | 1 cut(s) | 359 |
| BsaI | GGTCTC | 1 cut(s) | 2557 |
| BsaJI | CCNNGG | 6 cut(s) | 27, 316, 2202, 2353, 2471, 3506 |
| BsaWI | WCCGGW | 7 cut(s) | 83, 217, 346, 460, 532, 619, 795 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 116, 146, 1059, 1089, 2395, 2425, 2610, 2640 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 626, 643, 1104, 2078, 2122, 2700, 3107, 3181 |
| Bse118I | RCCGGY | 2 cut(s) | 83, 346 |
| Bse1I | ACTGG | 6 cut(s) | 1304, 2116, 2306, 2410, 2716, 3457 |
| Bse3DI | GCAATG | 2 cut(s) | 1950, 2386 |
| Bse8I | GATNNNNATC | 1 cut(s) | 359 |
| BseAI | TCCGGA | 2 cut(s) | 460, 619 |
| BseBI | CCWGG | 8 cut(s) | 317, 392, 470, 500, 1995, 2294, 3182, 3637 |
| BseCI | ATCGAT | 2 cut(s) | 269, 1416 |
| BseDI | CCNNGG | 6 cut(s) | 27, 316, 2202, 2353, 2471, 3506 |
| BseJI | GATNNNNATC | 1 cut(s) | 359 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 626, 643, 1104, 2078, 2122, 2700, 3107, 3181 |
| BseMI | GCAATG | 2 cut(s) | 1950, 2386 |
| BseMII | CTCAG | 8 cut(s) | 414, 495, 861, 1632, 1729, 2226, 2375, 2531 |
| BseNI | ACTGG | 6 cut(s) | 1304, 2116, 2306, 2410, 2716, 3457 |
| BseSI | GKGCMC | 1 cut(s) | 844 |
| BseYI | CCCAGC | 3 cut(s) | 1818, 2948, 3090 |
| BsgI | GTGCAG | 4 cut(s) | 1068, 1281, 1551, 3088 |
| Bsh1236I | CGCG | 1 cut(s) | 144 |
| BshFI | GGCC | 7 cut(s) | 121, 1012, 1796, 2512, 2555, 2614, 3635 |
| BshTI | ACCGGT | 2 cut(s) | 83, 346 |
| BshVI | ATCGAT | 2 cut(s) | 269, 1416 |
| BsiHKAI | GWGCWC | 6 cut(s) | 83, 91, 242, 2362, 3664, 3705 |
| BsiHKCI | CYCGRG | 1 cut(s) | 578 |
| BslFI | GGGAC | 6 cut(s) | 1046, 1084, 1962, 2288, 2930, 2994 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 626, 643, 1104, 2078, 2122, 2700, 3107, 3181 |
| BsmAI | GTCTC | 4 cut(s) | 100, 163, 1523, 2557 |
| BsmBI | CGTCTC | 2 cut(s) | 163, 1523 |
| BsmFI | GGGAC | 6 cut(s) | 1046, 1084, 1962, 2288, 2930, 2994 |
| BsmI | GAATGC | 1 cut(s) | 857 |
| BsnI | GGCC | 7 cut(s) | 121, 1012, 1796, 2512, 2555, 2614, 3635 |
| Bso31I | GGTCTC | 1 cut(s) | 2557 |
| BsoBI | CYCGRG | 1 cut(s) | 578 |
| Bsp1286I | GDGCHC | 9 cut(s) | 83, 91, 242, 844, 1613, 2151, 2362, 3664, 3705 |
| Bsp13I | TCCGGA | 2 cut(s) | 460, 619 |
| Bsp1407I | TGTACA | 1 cut(s) | 1255 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 278, 504 |
| Bsp19I | CCATGG | 3 cut(s) | 27, 2471, 3506 |
| BspANI | GGCC | 7 cut(s) | 121, 1012, 1796, 2512, 2555, 2614, 3635 |
| BspCNI | CTCAG | 8 cut(s) | 415, 496, 860, 1633, 1728, 2225, 2374, 2532 |
| BspDI | ATCGAT | 2 cut(s) | 269, 1416 |
| BspEI | TCCGGA | 2 cut(s) | 460, 619 |
| BspFNI | CGCG | 1 cut(s) | 144 |
| BspHI | TCATGA | 1 cut(s) | 2820 |
| BspMAI | CTGCAG | 2 cut(s) | 874, 2257 |
| BspPI | GGATC | 9 cut(s) | 261, 355, 427, 2522, 3029, 3316, 3318, 3497, 3510 |
| BspQI | GCTCTTC | 1 cut(s) | 947 |
| BspTNI | GGTCTC | 1 cut(s) | 2557 |
| BsrDI | GCAATG | 2 cut(s) | 1950, 2386 |
| BsrFI | RCCGGY | 2 cut(s) | 83, 346 |
| BsrGI | TGTACA | 1 cut(s) | 1255 |
| BsrI | ACTGG | 6 cut(s) | 1304, 2116, 2306, 2410, 2716, 3457 |
| BssAI | RCCGGY | 2 cut(s) | 83, 346 |
| BssECI | CCNNGG | 6 cut(s) | 27, 316, 2202, 2353, 2471, 3506 |
| BssSI | CACGAG | 1 cut(s) | 90 |
| BssT1I | CCWWGG | 5 cut(s) | 27, 2202, 2353, 2471, 3506 |
| Bst2BI | CACGAG | 1 cut(s) | 90 |
| Bst2UI | CCWGG | 8 cut(s) | 317, 392, 470, 500, 1995, 2294, 3182, 3637 |
| Bst6I | CTCTTC | 6 cut(s) | 782, 947, 2027, 2961, 3326, 3331 |
| BstAUI | TGTACA | 1 cut(s) | 1255 |
| BstC8I | GCNNGC | 5 cut(s) | 1566, 2892, 2940, 3534, 3620 |
| BstDSI | CCRYGG | 3 cut(s) | 27, 2471, 3506 |
| BstFNI | CGCG | 1 cut(s) | 144 |
| BstHHI | GCGC | 2 cut(s) | 144, 3056 |
| BstMAI | GTCTC | 4 cut(s) | 100, 163, 1523, 2557 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 118, 208, 256, 1556, 1565, 2004, 2451, 3709 |
| BstNI | CCWGG | 8 cut(s) | 317, 392, 470, 500, 1995, 2294, 3182, 3637 |
| BstNSI | RCATGY | 2 cut(s) | 935, 2465 |
| BstSCI | CCNGG | 8 cut(s) | 315, 390, 468, 498, 1993, 2292, 3180, 3635 |
| BstSFI | CTRYAG | 3 cut(s) | 870, 2253, 2440 |
| BstSLI | GKGCMC | 1 cut(s) | 844 |
| BstUI | CGCG | 1 cut(s) | 144 |
| BstV2I | GAAGAC | 4 cut(s) | 1964, 2334, 3071, 3103 |
| BstX2I | RGATCY | 8 cut(s) | 171, 360, 419, 2434, 2527, 3310, 3321, 3502 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3019 |
| BstYI | RGATCY | 8 cut(s) | 171, 360, 419, 2434, 2527, 3310, 3321, 3502 |
| Bsu15I | ATCGAT | 2 cut(s) | 269, 1416 |
| BsuI | GTATCC | 2 cut(s) | 2177, 2993 |
| BsuRI | GGCC | 7 cut(s) | 121, 1012, 1796, 2512, 2555, 2614, 3635 |
| BsuTUI | ATCGAT | 2 cut(s) | 269, 1416 |
| BtgI | CCRYGG | 3 cut(s) | 27, 2471, 3506 |
| BtgZI | GCGATG | 2 cut(s) | 2367, 3536 |
| BtsI | GCAGTG | 1 cut(s) | 2801 |
| BtsIMutI | CAGTG | 8 cut(s) | 1080, 1311, 2123, 2567, 2801, 3299, 3426, 3576 |
| Cac8I | GCNNGC | 5 cut(s) | 1566, 2892, 2940, 3534, 3620 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2672, 3266, 3578 |
| CciI | TCATGA | 1 cut(s) | 2820 |
| CfoI | GCGC | 2 cut(s) | 144, 3056 |
| Cfr10I | RCCGGY | 2 cut(s) | 83, 346 |
| Cfr13I | GGNCC | 5 cut(s) | 388, 394, 1795, 2613, 3110 |
| ClaI | ATCGAT | 2 cut(s) | 269, 1416 |
| CseI | GACGC | 1 cut(s) | 1224 |
| CsiI | ACCWGGT | 1 cut(s) | 2292 |
| Csp6I | GTAC | 5 cut(s) | 1256, 1710, 2216, 2872, 3570 |
| CspAI | ACCGGT | 2 cut(s) | 83, 346 |
| CviQI | GTAC | 5 cut(s) | 1256, 1710, 2216, 2872, 3570 |
| EaeI | YGGCCR | 1 cut(s) | 119 |
| Eam1104I | CTCTTC | 6 cut(s) | 782, 947, 2027, 2961, 3326, 3331 |
| EarI | CTCTTC | 6 cut(s) | 782, 947, 2027, 2961, 3326, 3331 |
| EciI | GGCGGA | 1 cut(s) | 344 |
| Ecl136II | GAGCTC | 2 cut(s) | 3662, 3703 |
| Eco130I | CCWWGG | 5 cut(s) | 27, 2202, 2353, 2471, 3506 |
| Eco147I | AGGCCT | 1 cut(s) | 2512 |
| Eco24I | GRGCYC | 4 cut(s) | 1613, 2151, 3664, 3705 |
| Eco31I | GGTCTC | 1 cut(s) | 2557 |
| Eco32I | GATATC | 1 cut(s) | 22 |
| Eco47I | GGWCC | 3 cut(s) | 388, 394, 3110 |
| Eco53kI | GAGCTC | 2 cut(s) | 3662, 3703 |
| Eco57I | CTGAAG | 1 cut(s) | 3239 |
| Eco88I | CYCGRG | 1 cut(s) | 578 |
| EcoICRI | GAGCTC | 2 cut(s) | 3662, 3703 |
| EcoRI | GAATTC | 1 cut(s) | 33 |
| EcoRII | CCWGG | 8 cut(s) | 315, 390, 468, 498, 1993, 2292, 3180, 3635 |
| EcoRV | GATATC | 1 cut(s) | 22 |
| EcoT14I | CCWWGG | 5 cut(s) | 27, 2202, 2353, 2471, 3506 |
| EcoT38I | GRGCYC | 4 cut(s) | 1613, 2151, 3664, 3705 |
| ErhI | CCWWGG | 5 cut(s) | 27, 2202, 2353, 2471, 3506 |
| Esp3I | CGTCTC | 2 cut(s) | 163, 1523 |
| FaqI | GGGAC | 6 cut(s) | 1046, 1084, 1962, 2288, 2930, 2994 |
| FauI | CCCGC | 1 cut(s) | 2846 |
| FauNDI | CATATG | 3 cut(s) | 2239, 2959, 3014 |
| FbaI | TGATCA | 2 cut(s) | 925, 2722 |
| FblI | GTMKAC | 1 cut(s) | 1116 |
| FriOI | GRGCYC | 4 cut(s) | 1613, 2151, 3664, 3705 |
| FspBI | CTAG | 5 cut(s) | 260, 1397, 1934, 3105, 3690 |
| GlaI | GCGC | 2 cut(s) | 143, 3055 |
| GsaI | CCCAGC | 3 cut(s) | 1822, 2952, 3094 |
| GsuI | CTGGAG | 1 cut(s) | 1476 |
| HaeIII | GGCC | 7 cut(s) | 121, 1012, 1796, 2512, 2555, 2614, 3635 |
| HgaI | GACGC | 1 cut(s) | 1224 |
| HhaI | GCGC | 2 cut(s) | 144, 3056 |
| Hin6I | GCGC | 2 cut(s) | 142, 3054 |
| HinP1I | GCGC | 2 cut(s) | 142, 3054 |
| HincII | GTYRAC | 2 cut(s) | 1132, 2299 |
| HindII | GTYRAC | 2 cut(s) | 1132, 2299 |
| HindIII | AAGCTT | 3 cut(s) | 701, 1342, 2888 |
| HphI | GGTGA | 9 cut(s) | 232, 973, 1009, 1018, 1346, 1432, 2870, 3005, 3281 |
| Hpy99I | CGWCG | 2 cut(s) | 181, 448 |
| HpyCH4IV | ACGT | 4 cut(s) | 1461, 1516, 1534, 3568 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 118, 208, 256, 1556, 1565, 2004, 2451, 3709 |
| HpySE526I | ACGT | 4 cut(s) | 1461, 1516, 1534, 3568 |
| HspAI | GCGC | 2 cut(s) | 142, 3054 |
| Kpn2I | TCCGGA | 2 cut(s) | 460, 619 |
| Ksp22I | TGATCA | 2 cut(s) | 925, 2722 |
| LguI | GCTCTTC | 1 cut(s) | 947 |
| LweI | GCATC | 7 cut(s) | 261, 928, 1308, 1390, 1930, 2659, 3491 |
| MabI | ACCWGGT | 1 cut(s) | 2292 |
| MaeI | CTAG | 5 cut(s) | 260, 1397, 1934, 3105, 3690 |
| MaeII | ACGT | 4 cut(s) | 1461, 1516, 1534, 3568 |
| MaeIII | GTNAC | 3 cut(s) | 1078, 2858, 3574 |
| MfeI | CAATTG | 2 cut(s) | 1971, 2479 |
| MflI | RGATCY | 8 cut(s) | 171, 360, 419, 2434, 2527, 3310, 3321, 3502 |
| MhlI | GDGCHC | 9 cut(s) | 83, 91, 242, 844, 1613, 2151, 2362, 3664, 3705 |
| MlyI | GAGTC | 6 cut(s) | 140, 593, 1652, 2833, 2855, 3422 |
| MmeI | TCCRAC | 7 cut(s) | 397, 724, 1489, 1925, 2657, 2807, 2862 |
| MroI | TCCGGA | 2 cut(s) | 460, 619 |
| MroXI | GAANNNNTTC | 5 cut(s) | 150, 1536, 1585, 1871, 3249 |
| MseI | TTAA | 9 cut(s) | 63, 879, 915, 1272, 2337, 2501, 2576, 3468, 3473 |
| MslI | CAYNNNNRTG | 3 cut(s) | 936, 2178, 2757 |
| MspA1I | CMGCKG | 1 cut(s) | 2853 |
| MspR9I | CCNGG | 8 cut(s) | 317, 392, 470, 500, 1995, 2294, 3182, 3637 |
| MunI | CAATTG | 2 cut(s) | 1971, 2479 |
| Mva1269I | GAATGC | 1 cut(s) | 857 |
| MvaI | CCWGG | 8 cut(s) | 317, 392, 470, 500, 1995, 2294, 3182, 3637 |
| MvnI | CGCG | 1 cut(s) | 144 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 118, 208, 256, 1556, 1565, 2004, 2451, 3709 |
| NcoI | CCATGG | 3 cut(s) | 27, 2471, 3506 |
| NdeI | CATATG | 3 cut(s) | 2239, 2959, 3014 |
| NmeAIII | GCCGAG | 1 cut(s) | 2978 |
| NmuCI | GTSAC | 2 cut(s) | 2858, 3574 |
| NspI | RCATGY | 2 cut(s) | 935, 2465 |
| OliI | CACNNNNGTG | 1 cut(s) | 2178 |
| PaeR7I | CTCGAG | 1 cut(s) | 578 |
| PagI | TCATGA | 1 cut(s) | 2820 |
| PceI | AGGCCT | 1 cut(s) | 2512 |
| PciSI | GCTCTTC | 1 cut(s) | 947 |
| PctI | GAATGC | 1 cut(s) | 857 |
| PdmI | GAANNNNTTC | 5 cut(s) | 150, 1536, 1585, 1871, 3249 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3107 |
| PinAI | ACCGGT | 2 cut(s) | 83, 346 |
| PleI | GAGTC | 6 cut(s) | 139, 592, 1651, 2832, 2855, 3421 |
| PpsI | GAGTC | 6 cut(s) | 139, 592, 1651, 2832, 2855, 3421 |
| PshBI | ATTAAT | 2 cut(s) | 879, 2501 |
| PsiI | TTATAA | 1 cut(s) | 3497 |
| Psp124BI | GAGCTC | 2 cut(s) | 3664, 3705 |
| Psp6I | CCWGG | 8 cut(s) | 315, 390, 468, 498, 1993, 2292, 3180, 3635 |
| PspFI | CCCAGC | 3 cut(s) | 1818, 2948, 3090 |
| PspGI | CCWGG | 8 cut(s) | 315, 390, 468, 498, 1993, 2292, 3180, 3635 |
| PspPI | GGNCC | 5 cut(s) | 388, 394, 1795, 2613, 3110 |
| PspXI | VCTCGAGB | 1 cut(s) | 578 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3606, 3638 |
| PstI | CTGCAG | 2 cut(s) | 874, 2257 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2672, 3266, 3578 |
| PsuI | RGATCY | 8 cut(s) | 171, 360, 419, 2434, 2527, 3310, 3321, 3502 |
| RsaI | GTAC | 5 cut(s) | 1257, 1711, 2217, 2873, 3571 |
| RsaNI | GTAC | 5 cut(s) | 1256, 1710, 2216, 2872, 3570 |
| RseI | CAYNNNNRTG | 3 cut(s) | 936, 2178, 2757 |
| SacI | GAGCTC | 2 cut(s) | 3664, 3705 |
| SapI | GCTCTTC | 1 cut(s) | 947 |
| SaqAI | TTAA | 9 cut(s) | 63, 879, 915, 1272, 2337, 2501, 2576, 3468, 3473 |
| Sau96I | GGNCC | 5 cut(s) | 388, 394, 1795, 2613, 3110 |
| SchI | GAGTC | 6 cut(s) | 140, 593, 1652, 2833, 2855, 3422 |
| ScrFI | CCNGG | 8 cut(s) | 317, 392, 470, 500, 1995, 2294, 3182, 3637 |
| SduI | GDGCHC | 9 cut(s) | 83, 91, 242, 844, 1613, 2151, 2362, 3664, 3705 |
| SexAI | ACCWGGT | 1 cut(s) | 2292 |
| SfaNI | GCATC | 7 cut(s) | 261, 928, 1308, 1390, 1930, 2659, 3491 |
| SfcI | CTRYAG | 3 cut(s) | 870, 2253, 2440 |
| Sfr274I | CTCGAG | 1 cut(s) | 578 |
| SgrAI | CRCCGGYG | 1 cut(s) | 83 |
| SinI | GGWCC | 3 cut(s) | 388, 394, 3110 |
| SlaI | CTCGAG | 1 cut(s) | 578 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 936, 2178, 2757 |
| SmlI | CTYRAG | 2 cut(s) | 578, 3085 |
| SmoI | CTYRAG | 2 cut(s) | 578, 3085 |
| SseBI | AGGCCT | 1 cut(s) | 2512 |
| SspI | AATATT | 1 cut(s) | 1528 |
| SspMI | CTAG | 5 cut(s) | 260, 1397, 1934, 3105, 3690 |
| SstI | GAGCTC | 2 cut(s) | 3664, 3705 |
| StuI | AGGCCT | 1 cut(s) | 2512 |
| StyD4I | CCNGG | 8 cut(s) | 315, 390, 468, 498, 1993, 2292, 3180, 3635 |
| StyI | CCWWGG | 5 cut(s) | 27, 2202, 2353, 2471, 3506 |
| TaiI | ACGT | 4 cut(s) | 1464, 1519, 1537, 3571 |
| TaqII | GACCGA | 1 cut(s) | 376 |
| TatI | WGTACW | 3 cut(s) | 1255, 1709, 2215 |
| TauI | GCSGC | 3 cut(s) | 277, 3177, 3482 |
| Tru1I | TTAA | 9 cut(s) | 63, 879, 915, 1272, 2337, 2501, 2576, 3468, 3473 |
| Tru9I | TTAA | 9 cut(s) | 63, 879, 915, 1272, 2337, 2501, 2576, 3468, 3473 |
| TscAI | CASTG | 8 cut(s) | 1080, 1311, 2123, 2574, 2801, 3299, 3426, 3583 |
| TseFI | GTSAC | 2 cut(s) | 2858, 3574 |
| Tsp45I | GTSAC | 2 cut(s) | 2858, 3574 |
| TspDTI | ATGAA | 8 cut(s) | 874, 1377, 1560, 1641, 2142, 2337, 3344, 3539 |
| TspGWI | ACGGA | 4 cut(s) | 1058, 1385, 2975, 3221 |
| TspRI | CASTG | 8 cut(s) | 1080, 1311, 2123, 2574, 2801, 3299, 3426, 3583 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3107 |
| VpaK11BI | GGWCC | 3 cut(s) | 388, 394, 3110 |
| VspI | ATTAAT | 2 cut(s) | 879, 2501 |
| XapI | RAATTY | 5 cut(s) | 33, 224, 824, 1153, 1895 |
| XceI | RCATGY | 2 cut(s) | 935, 2465 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2478 |
| XhoI | CTCGAG | 1 cut(s) | 578 |
| XmiI | GTMKAC | 1 cut(s) | 1116 |
| XmnI | GAANNNNTTC | 5 cut(s) | 150, 1536, 1585, 1871, 3249 |
| XspI | CTAG | 5 cut(s) | 260, 1397, 1934, 3105, 3690 |