Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

39475795 .. 39476022

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0336000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTTATTTATAATGATGCTTCTTTGTGATAGAGTTATCTTTCCAGTATGTTACCGCTTTGTCAAACCAAATGGAGTAGCCATTCTTGCACTTTTTGCTAATTGGTGCTTGTTAGAATACTTAGATTTTGTGGAGAATCATGGTATTATTTCAGGATGTTCTCTCGATGCTTATTGTAATTTGCGATTCAGACTTCACGTCCCCCCTTCTATTCTGCAGTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

75

Amino Acids

8.72

Weight (kDa)

6.79

Isoelectric Point (pI)

26.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AciI	CCGC	1 cut(s)	55
AhdI	GACNNNNNGTC	1 cut(s)	197
AjiI	CACGTC	1 cut(s)	199
BfmI	CTRYAG	1 cut(s)	215
BmeRI	GACNNNNNGTC	1 cut(s)	197
BmgBI	CACGTC	1 cut(s)	199
BmsI	GCATC	2 cut(s)	6, 157
Bse1I	ACTGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	185
BspACI	CCGC	1 cut(s)	55
BspMAI	CTGCAG	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 95
BstSFI	CTRYAG	1 cut(s)	215
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	161
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	1 cut(s)	80
CviKI_1	RGCY	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	121
DriI	GACNNNNNGTC	1 cut(s)	197
Eam1105I	GACNNNNNGTC	1 cut(s)	197
FaeI	CATG	1 cut(s)	143
FaiI	YATR	3 cut(s)	11, 49, 141
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	139
FokI	GGATG	1 cut(s)	168
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	2 cut(s)	136, 186
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	2 cut(s)	153, 164
HpyAV	CCTTC	1 cut(s)	216
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	89, 217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 95
HpyF3I	CTNAG	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	143
LpnPI	CCDG	2 cut(s)	57, 138
LweI	GCATC	2 cut(s)	6, 157
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	50
MluCI	AATT	2 cut(s)	100, 178
MseI	TTAA	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	86, 95
NlaIII	CATG	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	136, 186
PsiI	TTATAA	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	226
SetI	ASST	1 cut(s)	201
SfaNI	GCATC	2 cut(s)	6, 157
SfcI	CTRYAG	1 cut(s)	215
SgeI	CNNG	7 cut(s)	56, 98, 121, 152, 165, 176, 209
Sse9I	AATT	2 cut(s)	100, 178
SsiI	CCGC	1 cut(s)	55
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	165
TasI	AATT	2 cut(s)	100, 178
TfiI	GAWTC	2 cut(s)	136, 186
Tru1I	TTAA	1 cut(s)	226
Tru9I	TTAA	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.