Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

6922598 .. 6923785

Gene Structure 1188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36429

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAAAGTGCATCATTTTCAGTCAGTGGGCCGTCATTTTTGGATCTCTTGGAGATCTCTATGAAGAGAAGAAATATCGTGTTTCAGAGGATTGATGACAATCTGTCGGAGGATAAGAGGGATAGGGTTTTGAAGGACTTCAGCCTTTACCGCACCAAAGATAAACAGGTCTTGTTGATATGTTTAAGAACTGAAGCTGGTTACGATTTTAGTGCAGCGTCTAATATCTTTTTAATGGATCCATGGTGGAATCCACCCGCTGAGGAGAAAATACTAATGAGAATTATACGCAGTAGAAAACATGGAACTGTTGTTAGAAGATTTATTGTCAAGGACACATTGGAGGAACGCATGCAACAGCTTCAGTCTAGAAAGCAGCAAATGAGTGTGGAAGTTGTCCCTGTTGAGAAAGATCGATCGGCCAGAATTGAGGACCTCAAAATGATTTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

151

Amino Acids

17.9

Weight (kDa)

9.75

Isoelectric Point (pI)

66.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	17 - 98	2.2e-08	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	151, 258
AclWI	GGATC	3 cut(s)	51, 233, 246
AcoI	YGGCCR	1 cut(s)	420
AcuI	CTGAAG	3 cut(s)	124, 213, 347
AgsI	TTSAA	1 cut(s)	133
AhdI	GACNNNNNGTC	1 cut(s)	103
AluBI	AGCT	2 cut(s)	197, 361
AluI	AGCT	2 cut(s)	197, 361
AlwI	GGATC	3 cut(s)	51, 233, 246
AoxI	GGCC	2 cut(s)	29, 420
ApeKI	GCWGC	2 cut(s)	215, 376
Asp700I	GAANNNNTTC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	29, 433
AvaII	GGWCC	1 cut(s)	433
BamHI	GGATCC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	227, 388
BceAI	ACGGC	1 cut(s)	16
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BfaI	CTAG	1 cut(s)	369
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	2 cut(s)	216, 377
BlsI	GCNGC	2 cut(s)	217, 378
Bme18I	GGWCC	1 cut(s)	433
BmeRI	GACNNNNNGTC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	29, 433
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	1 cut(s)	20
Bpu10I	CCTNAGC	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	415
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	99
BseCI	ATCGAT	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	242
BseJI	GATNNNNATC	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	227, 388
BsgI	GTGCAG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	419
BshFI	GGCC	2 cut(s)	31, 422
BshVI	ATCGAT	1 cut(s)	415
BsiEI	CGRYCG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	2 cut(s)	31, 422
Bsp143I	GATC	5 cut(s)	43, 54, 238, 412, 416
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	2 cut(s)	151, 258
BspANI	GGCC	2 cut(s)	31, 422
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	3 cut(s)	51, 233, 246
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	5 cut(s)	43, 54, 238, 412, 416
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	242
BstKTI	GATC	5 cut(s)	46, 57, 241, 415, 419
BstMBI	GATC	5 cut(s)	43, 54, 238, 412, 416
BstMCI	CGRYCG	1 cut(s)	419
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	227, 388
BstX2I	RGATCY	3 cut(s)	43, 54, 238
BstYI	RGATCY	3 cut(s)	43, 54, 238
Bsu15I	ATCGAT	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	31, 422
BsuTUI	ATCGAT	1 cut(s)	415
BtgI	CCRYGG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	29, 433
ClaI	ATCGAT	1 cut(s)	415
CseI	GACGC	1 cut(s)	207
CviAII	CATG	3 cut(s)	243, 302, 352
CviJI	RGCY	5 cut(s)	31, 144, 197, 361, 422
CviKI_1	RGCY	5 cut(s)	31, 144, 197, 361, 422
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	5 cut(s)	45, 56, 240, 414, 418
DpnII	GATC	5 cut(s)	43, 54, 238, 412, 416
DriI	GACNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	59
Eam1105I	GACNNNNNGTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	3 cut(s)	124, 213, 347
EcoO109I	RGGNCCY	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	3 cut(s)	246, 305, 355
FaiI	YATR	6 cut(s)	62, 181, 244, 287, 303, 353
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	242, 301, 351
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	216, 377
Fsp4HI	GCNGC	2 cut(s)	216, 377
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	2 cut(s)	216, 377
HaeIII	GGCC	2 cut(s)	31, 422
HgaI	GACGC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	246, 305, 355
HinfI	GANTC	1 cut(s)	250
Hpy188I	TCNGA	3 cut(s)	87, 109, 452
Hpy188III	TCNNGA	1 cut(s)	369
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	3 cut(s)	11, 215, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	246, 305, 355
Kzo9I	GATC	5 cut(s)	43, 54, 238, 412, 416
LpnPI	CCDG	4 cut(s)	152, 183, 414, 436
Lsp1109I	GCAGC	2 cut(s)	227, 388
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	5 cut(s)	45, 56, 240, 414, 418
MboI	GATC	5 cut(s)	43, 54, 238, 412, 416
MboII	GAAGA	3 cut(s)	76, 81, 330
MflI	RGATCY	3 cut(s)	43, 54, 238
MluCI	AATT	2 cut(s)	282, 426
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	7 cut(s)	81, 103, 111, 256, 337, 424, 446
MroXI	GAANNNNTTC	1 cut(s)	137
MseI	TTAA	2 cut(s)	185, 233
MspA1I	CMGCKG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	242
NdeII	GATC	5 cut(s)	43, 54, 238, 412, 416
NlaIII	CATG	3 cut(s)	246, 305, 355
NlaIV	GGNNCC	1 cut(s)	240
NspI	RCATGY	1 cut(s)	355
PaeI	GCATGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	217, 378
Ple19I	CGATCG	1 cut(s)	419
PpuMI	RGGWCCY	1 cut(s)	433
Psp5II	RGGWCCY	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	29, 433
PspPPI	RGGWCCY	1 cut(s)	433
PsuI	RGATCY	3 cut(s)	43, 54, 238
PvuI	CGATCG	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	185, 233
SatI	GCNGC	2 cut(s)	216, 377
Sau3AI	GATC	5 cut(s)	43, 54, 238, 412, 416
Sau96I	GGNCC	2 cut(s)	29, 433
SetI	ASST	4 cut(s)	171, 199, 363, 438
SfaNI	GCATC	1 cut(s)	20
SinI	GGWCC	1 cut(s)	433
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	2 cut(s)	282, 426
SsiI	CCGC	2 cut(s)	151, 258
SspMI	CTAG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	415
TasI	AATT	2 cut(s)	282, 426
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	185, 233
Tru9I	TTAA	2 cut(s)	185, 233
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	2 cut(s)	215, 376
TspDTI	ATGAA	2 cut(s)	17, 77
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	433
XbaI	TCTAGA	1 cut(s)	368
XceI	RCATGY	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.