Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

5768132 .. 5867761

Gene Structure 99630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG032600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGGATACAGAACACGTGGCTGATCGGCACAAAGTCCCATCAGTTATCGGTGAGCCCACCAATTCCGATCAAGAAATTCCGACGGCCGTGACGGTTAAGCGGACGAATACAAGCTCCGGGGCTCGCGTTTCGACTCTTATCAAGCAAAAGTGCATTGAGGATTTTGATGAAGTTGCGGAAAGTCGAAGCACTTTGATTCCGGAGCCTAAGGTCAAGAGGGTAAAGAAGGAAGTTCCTGACTGTGAACTGGTGTCAGTGCAACAGGTGAGACCTCAGAATTTGGAGGATGGCGATTTCAAGATTGAGCCGGATTGGTTCTTGGTGGGAAGCACATCGGTTTCTGCGGTTTCGACTAGTAAAGGCATGAAATTGTTGGACAATGAGATTGTTCATCTCTCTTTTCCTTCCTCAAATTCCAGCTACAAAACCCAATGGATTGTTCGTTTTTCGACGAAAAGATCAGGAGAGATTGGTCGGTTTCCAATGGAATGGGCAAAATGTGTTGTTCCTCTTGTGAATTCGGGTAAGGTTAAAGTTCTTGGGCGGTTTAATGGTGCGCCGAAATTCCTATCTATGATGCAAGAGGTCATATTGTCTTTGAGTTTTTATGTTCATCATTCAATTTCCGCTGCTGTTGAGGTGTCTTCATGTAAGCGAGAGGATTCGTATCCTTTTCTCACCTTGTTCAAATTACTGAAACTCCAACCATATCAGAAGTGTGATCTGGATGAAGCTGTCAAACAAAGAAGGGGTAGCCAACAGTATACATTAGAAAACAGAGATGAAGAAGCCATTTCAGAGTCTTCTCTGAATAACATTGCTAGTGCTGCAGATGCTTGTAACTTGAAGGAGATGGAAACCCCAAGTACTCTCTATTGTAATCTGAGGCCATACCAGAAACAAGCTCTCCATTGGATGTCAGAATTTGAGAAGGGGATTGATGTCGAGAAGTCAGCACCAACTCTTCATCCTTGCTGGAAGGCCTATCGTATATGTGATGAGAGGGCTTCTTTCATCTATGTGAACATGTTCTCAGGGGAGGCAACAACACACTTACCAACTGCAACACAAACGCCAAGAGGAGGAATTCTAGCAGATGCAATGGGACTGGGGAAGACTGTGATGACAATTGCTCTAATACTTGCAAGACCAAGGAGAGGAAACTCTGATAGTATTGAAATTACAAAGAAGAGAAAGATAGATCAAGATACAATGACAACATTAAAGCCAAAGGGAGGCACTCTTGTTGTCTGTCCTAGCGTACTCAAGTGGAAGGATGCGCTTGAAACCCCCCATTCAGAGTCGAAAAGTATTTCTACTTTGGTCCATGTTTGGGGGAGAACCATCAGCCCCGTGGTGATTTCAGAACAAGATGTGGTCTTGACTGACTATGATTTTCTGACTTACGATTATTATTTGTATCGCGAGAACAGTGTCTTACACCAGGTTGACTGGTATAGGGTGGTGCTCGATGATGCTGATACTCTTGGATCGTCAGGGGCAAAAGAAGCTGCTAAGGCTGCTTCTATGTTGTCCTCTCATTGCCGATGGTGGTTGACAGGAACCCCTCTTAAGATTGATTTGGAAGACATCTACAGCCTCTTATGTTTCTTGCATGTTGAGCCATGGAGCAACTGGGCATGCTGGAAGAAATTAATTCAGACGCCTTATGAAAATGGTGATCCAAGAGGATTGAGATTGATAAAGGACATTTTGAGGCCATTGATGTTAAGAAGAACAAAGGAGGCAAAGGAGAAAGATGGAAGCCCCATATTCATACTTCCTCCTGACGTTGAAACTATTGAATGTCATCAGTCTGAAGCTGAACAAGAGTTCTATGATGCCCTTTTTAAGAGATCAAAAGTTCAGTTTGACCAGTTTGTGGCACAAGGCAAGGTTCTTCACAACTATGCACATGCCCTTGGGCTATTGCTTCGTTTAAGGCAGTGTTGCAACCACCCATTTTTTGTTTCGAGTCCGCATGATTCACAAAACTCTGCAGACTTGGACAAGCCTGCTAGAAGATTCCTTGAAACCCATCATGATTCTCCAAGTTCAGATCAGATTCTCCCCACCCAATCACATGTAGGAGAGGTTGTTGAGGGTATCCATCGGTTGAAAATACTGTGTGTCCCATATGCTTTGATTGCACATATGATCCTGTACTTACACCATGTGGACATAAGATGTGCAGGAAGTGTCTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

736

Amino Acids

83.09

Weight (kDa)

6.69

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	108 - 200	4e-13	HIRAN domain
SNF2-rel_dom	PF00176	298 - 655	7.3e-53	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1882
AccI	GTMKAC	1 cut(s)	764
AccII	CGCG	2 cut(s)	126, 1425
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	6 cut(s)	100, 176, 344, 544, 627, 1979
AclWI	GGATC	3 cut(s)	1498, 1676, 2152
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	7 cut(s)	75, 277, 412, 517, 563, 923, 1086
AcuI	CTGAAG	1 cut(s)	1839
AcvI	CACGTG	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	1664
AdeI	CACNNNGTG	1 cut(s)	2176
AfaI	GTAC	3 cut(s)	868, 1263, 2165
AfiI	CCNNNNNNNGG	5 cut(s)	1082, 1157, 1235, 1333, 1882
AflII	CTTAAG	1 cut(s)	1571
AflIII	ACRYGT	3 cut(s)	13, 1026, 2083
AhlI	ACTAGT	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	1443
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	6 cut(s)	114, 420, 734, 905, 1511, 1823
AluI	AGCT	6 cut(s)	114, 420, 734, 905, 1511, 1823
Alw21I	GWGCWC	1 cut(s)	1470
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	3 cut(s)	1498, 1676, 2152
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	4 cut(s)	84, 887, 981, 1718
ApeKI	GCWGC	4 cut(s)	629, 827, 1511, 1520
ApoI	RAATTY	7 cut(s)	75, 277, 412, 517, 563, 923, 1086
AseI	ATTAAT	1 cut(s)	1655
Asp700I	GAANNNNTTC	1 cut(s)	1028
AspLEI	GCGC	2 cut(s)	559, 1282
AspS9I	GGNCC	1 cut(s)	1324
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	5 cut(s)	62, 277, 670, 1369, 1691
AvaII	GGWCC	1 cut(s)	1324
AxyI	CCTNAGG	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	57, 124
BbrPI	CACGTG	1 cut(s)	16
BbsI	GAAGAC	4 cut(s)	636, 795, 1121, 1593
Bbv12I	GWGCWC	1 cut(s)	1470
BbvI	GCAGC	4 cut(s)	616, 814, 1498, 1507
BccI	CCATC	8 cut(s)	46, 281, 847, 1352, 1542, 1754, 2046, 2118
BceAI	ACGGC	2 cut(s)	71, 99
BciT130I	CCWGG	1 cut(s)	1445
BciVI	GTATCC	2 cut(s)	678, 2117
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	262
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	5 cut(s)	354, 822, 1091, 1257, 2019
BfmI	CTRYAG	3 cut(s)	828, 1594, 1998
BfrI	CTTAAG	1 cut(s)	1571
BfuI	GTATCC	2 cut(s)	678, 2117
BisI	GCNGC	4 cut(s)	630, 828, 1512, 1521
BlsI	GCNGC	4 cut(s)	631, 829, 1513, 1522
BmcAI	AGTACT	1 cut(s)	868
Bme1390I	CCNGG	2 cut(s)	118, 1445
Bme18I	GGWCC	1 cut(s)	1324
BmgT120I	GGNCC	1 cut(s)	1324
BmiI	GGNNCC	2 cut(s)	204, 1564
BmrFI	CCNGG	2 cut(s)	118, 1445
BmrI	ACTGGG	2 cut(s)	1118, 1645
BmsI	GCATC	6 cut(s)	567, 823, 1087, 1267, 1465, 1831
BmuI	ACTGGG	2 cut(s)	1118, 1645
BpiI	GAAGAC	4 cut(s)	636, 795, 1121, 1593
Bpu10I	CCTNAGC	1 cut(s)	1515
BpuEI	CTTGAG	1 cut(s)	1250
BpuMI	CCSGG	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	666
BsaHI	GRCGYC	1 cut(s)	1664
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	5 cut(s)	117, 1151, 1353, 1625, 1921
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	6 cut(s)	684, 714, 891, 921, 2082, 2112
Bsc4I	CCNNNNNNNGG	5 cut(s)	1082, 1157, 1235, 1333, 1882
Bse1I	ACTGG	5 cut(s)	252, 1113, 1457, 1640, 1876
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	3 cut(s)	816, 1107, 1540
Bse8I	GATNNNNATC	1 cut(s)	666
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	1445
BseDI	CCNNGG	5 cut(s)	117, 1151, 1353, 1625, 1921
BseGI	GGATG	5 cut(s)	292, 733, 921, 967, 1282
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	5 cut(s)	1082, 1157, 1235, 1333, 1882
BseMI	GCAATG	3 cut(s)	816, 1107, 1540
BseMII	CTCAG	3 cut(s)	287, 875, 1047
BseNI	ACTGG	5 cut(s)	252, 1113, 1457, 1640, 1876
BseRI	GAGGAG	1 cut(s)	1095
BseX3I	CGGCCG	1 cut(s)	84
BseXI	GCAGC	4 cut(s)	616, 814, 1498, 1507
BsgI	GTGCAG	1 cut(s)	2211
Bsh1236I	CGCG	2 cut(s)	126, 1425
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	4 cut(s)	86, 889, 983, 1720
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	1470
BsiSI	CCGG	3 cut(s)	117, 200, 308
BslFI	GGGAC	3 cut(s)	20, 1119, 2117
BslI	CCNNNNNNNGG	5 cut(s)	1082, 1157, 1235, 1333, 1882
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	3 cut(s)	20, 1119, 2117
BsnI	GGCC	4 cut(s)	86, 889, 983, 1720
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	3 cut(s)	57, 124, 1470
Bsp13I	TCCGGA	1 cut(s)	199
Bsp19I	CCATGG	1 cut(s)	1625
Bsp68I	TCGCGA	1 cut(s)	1425
BspACI	CCGC	6 cut(s)	100, 176, 344, 544, 627, 1979
BspANI	GGCC	4 cut(s)	86, 889, 983, 1720
BspCNI	CTCAG	3 cut(s)	286, 876, 1046
BspEI	TCCGGA	1 cut(s)	199
BspFNI	CGCG	2 cut(s)	126, 1425
BspHI	TCATGA	1 cut(s)	2041
BspLI	GGNNCC	2 cut(s)	204, 1564
BspMAI	CTGCAG	2 cut(s)	832, 2002
BspPI	GGATC	3 cut(s)	1498, 1676, 2152
BspTI	CTTAAG	1 cut(s)	1571
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	3 cut(s)	816, 1107, 1540
BsrI	ACTGG	5 cut(s)	252, 1113, 1457, 1640, 1876
BssECI	CCNNGG	5 cut(s)	117, 1151, 1353, 1625, 1921
BssNAI	GTATAC	1 cut(s)	765
BssNI	GRCGYC	1 cut(s)	1664
BssT1I	CCWWGG	3 cut(s)	1151, 1625, 1921
Bst1107I	GTATAC	1 cut(s)	765
Bst2UI	CCWGG	1 cut(s)	1445
Bst4CI	ACNGT	6 cut(s)	94, 242, 762, 1120, 1433, 2127
Bst6I	CTCTTC	2 cut(s)	969, 1184
BstACI	GRCGYC	1 cut(s)	1664
BstAFI	CTTAAG	1 cut(s)	1571
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	3 cut(s)	124, 1642, 2016
BstDEI	CTNAG	5 cut(s)	207, 273, 884, 1033, 1515
BstDSI	CCRYGG	2 cut(s)	1353, 1625
BstF5I	GGATG	5 cut(s)	292, 733, 921, 967, 1282
BstFNI	CGCG	2 cut(s)	126, 1425
BstHHI	GCGC	2 cut(s)	559, 1282
BstMAI	GTCTC	1 cut(s)	262
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	7 cut(s)	827, 833, 1508, 1517, 1520, 1621, 2147
BstNI	CCWGG	1 cut(s)	1445
BstNSI	RCATGY	5 cut(s)	1030, 1619, 1644, 1919, 2087
BstSCI	CCNGG	2 cut(s)	116, 1443
BstSFI	CTRYAG	3 cut(s)	828, 1594, 1998
BstUI	CGCG	2 cut(s)	126, 1425
BstV1I	GCAGC	4 cut(s)	616, 814, 1498, 1507
BstV2I	GAAGAC	4 cut(s)	636, 795, 1121, 1593
BstXI	CCANNNNNNTGG	1 cut(s)	489
BstZ17I	GTATAC	1 cut(s)	765
BstZI	CGGCCG	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	207
BsuI	GTATCC	2 cut(s)	678, 2117
BsuRI	GGCC	4 cut(s)	86, 889, 983, 1720
BtgI	CCRYGG	2 cut(s)	1353, 1625
BtsCI	GGATG	5 cut(s)	292, 733, 921, 967, 1282
BtsI	GCAGTG	1 cut(s)	1952
BtsIMutI	CAGTG	3 cut(s)	261, 1438, 1952
BtuMI	TCGCGA	1 cut(s)	1425
Cac8I	GCNNGC	3 cut(s)	124, 1642, 2016
CciI	TCATGA	1 cut(s)	2041
CfoI	GCGC	2 cut(s)	559, 1282
Cfr13I	GGNCC	1 cut(s)	1324
CseI	GACGC	1 cut(s)	1672
CsiI	ACCWGGT	1 cut(s)	1443
Csp6I	GTAC	3 cut(s)	867, 1262, 2164
CviQI	GTAC	3 cut(s)	867, 1262, 2164
DdeI	CTNAG	5 cut(s)	207, 273, 884, 1033, 1515
DraIII	CACNNNGTG	1 cut(s)	2176
EaeI	YGGCCR	1 cut(s)	84
EagI	CGGCCG	1 cut(s)	84
Eam1104I	CTCTTC	2 cut(s)	969, 1184
EarI	CTCTTC	2 cut(s)	969, 1184
EclXI	CGGCCG	1 cut(s)	84
Eco130I	CCWWGG	3 cut(s)	1151, 1625, 1921
Eco147I	AGGCCT	1 cut(s)	983
Eco24I	GRGCYC	2 cut(s)	57, 124
Eco31I	GGTCTC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	1324
Eco52I	CGGCCG	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	1839
Eco72I	CACGTG	1 cut(s)	16
Eco81I	CCTNAGG	1 cut(s)	207
EcoRI	GAATTC	2 cut(s)	517, 1086
EcoRII	CCWGG	1 cut(s)	1443
EcoT14I	CCWWGG	3 cut(s)	1151, 1625, 1921
EcoT38I	GRGCYC	2 cut(s)	57, 124
ErhI	CCWWGG	3 cut(s)	1151, 1625, 1921
FaqI	GGGAC	3 cut(s)	20, 1119, 2117
FauNDI	CATATG	2 cut(s)	2137, 2154
FblI	GTMKAC	1 cut(s)	764
Fnu4HI	GCNGC	4 cut(s)	630, 828, 1512, 1521
FokI	GGATG	5 cut(s)	299, 740, 928, 954, 1289
FriOI	GRGCYC	2 cut(s)	57, 124
Fsp4HI	GCNGC	4 cut(s)	630, 828, 1512, 1521
FspBI	CTAG	5 cut(s)	354, 822, 1091, 1257, 2019
GlaI	GCGC	2 cut(s)	558, 1281
GluI	GCNGC	4 cut(s)	630, 828, 1512, 1521
HaeIII	GGCC	4 cut(s)	86, 889, 983, 1720
HapII	CCGG	3 cut(s)	117, 200, 308
HgaI	GACGC	1 cut(s)	1672
HhaI	GCGC	2 cut(s)	559, 1282
Hin1I	GRCGYC	1 cut(s)	1664
Hin6I	GCGC	2 cut(s)	557, 1280
HinP1I	GCGC	2 cut(s)	557, 1280
HincII	GTYRAC	2 cut(s)	1450, 1557
HindII	GTYRAC	2 cut(s)	1450, 1557
HpaII	CCGG	3 cut(s)	117, 200, 308
HphI	GGTGA	5 cut(s)	62, 277, 670, 1369, 1691
Hpy166II	GTNNAC	6 cut(s)	245, 765, 1024, 1450, 1557, 2179
Hpy8I	GTNNAC	6 cut(s)	245, 765, 1024, 1450, 1557, 2179
Hpy99I	CGWCG	2 cut(s)	85, 454
HpyAV	CCTTC	7 cut(s)	220, 414, 741, 841, 925, 973, 1267
HpyCH4III	ACNGT	6 cut(s)	94, 242, 762, 1120, 1433, 2127
HpyCH4IV	ACGT	2 cut(s)	15, 1791
HpyF10VI	GCNNNNNNNGC	7 cut(s)	827, 833, 1508, 1517, 1520, 1621, 2147
HpyF3I	CTNAG	5 cut(s)	207, 273, 884, 1033, 1515
HpySE526I	ACGT	2 cut(s)	15, 1791
Hsp92I	GRCGYC	1 cut(s)	1664
HspAI	GCGC	2 cut(s)	557, 1280
Kpn2I	TCCGGA	1 cut(s)	199
LmnI	GCTCC	3 cut(s)	119, 202, 1629
Lsp1109I	GCAGC	4 cut(s)	616, 814, 1498, 1507
LweI	GCATC	6 cut(s)	567, 823, 1087, 1267, 1465, 1831
MabI	ACCWGGT	1 cut(s)	1443
MaeI	CTAG	5 cut(s)	354, 822, 1091, 1257, 2019
MaeII	ACGT	2 cut(s)	15, 1791
MaeIII	GTNAC	2 cut(s)	88, 839
MfeI	CAATTG	1 cut(s)	1128
MhlI	GDGCHC	3 cut(s)	57, 124, 1470
MlyI	GAGTC	4 cut(s)	127, 809, 1310, 1984
MmeI	TCCRAC	3 cut(s)	104, 354, 727
MroI	TCCGGA	1 cut(s)	199
MroXI	GAANNNNTTC	1 cut(s)	1028
MseI	TTAA	9 cut(s)	96, 531, 549, 1223, 1572, 1655, 1730, 1851, 1940
MslI	CAYNNNNRTG	2 cut(s)	1019, 1908
MspA1I	CMGCKG	1 cut(s)	629
MspCI	CTTAAG	1 cut(s)	1571
MspI	CCGG	3 cut(s)	117, 200, 308
MspR9I	CCNGG	2 cut(s)	118, 1445
MunI	CAATTG	1 cut(s)	1128
MvaI	CCWGG	1 cut(s)	1445
MvnI	CGCG	2 cut(s)	126, 1425
MwoI	GCNNNNNNNGC	7 cut(s)	827, 833, 1508, 1517, 1520, 1621, 2147
NciI	CCSGG	1 cut(s)	118
NcoI	CCATGG	1 cut(s)	1625
NdeI	CATATG	2 cut(s)	2137, 2154
NlaIV	GGNNCC	2 cut(s)	204, 1564
NmuCI	GTSAC	1 cut(s)	88
NruI	TCGCGA	1 cut(s)	1425
NspI	RCATGY	5 cut(s)	1030, 1619, 1644, 1919, 2087
PaeI	GCATGC	1 cut(s)	1644
PagI	TCATGA	1 cut(s)	2041
PceI	AGGCCT	1 cut(s)	983
PciI	ACATGT	2 cut(s)	1026, 2083
PdmI	GAANNNNTTC	1 cut(s)	1028
PfeI	GAWTC	6 cut(s)	196, 662, 1985, 2025, 2045, 2065
PflMI	CCANNNNNTGG	1 cut(s)	1882
PkrI	GCNGC	4 cut(s)	631, 829, 1513, 1522
PleI	GAGTC	4 cut(s)	127, 808, 1309, 1983
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
PpsI	GAGTC	4 cut(s)	127, 808, 1309, 1983
Ppu21I	YACGTR	1 cut(s)	16
PscI	ACATGT	2 cut(s)	1026, 2083
PshBI	ATTAAT	1 cut(s)	1655
Psp6I	CCWGG	1 cut(s)	1443
PspCI	CACGTG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	1443
PspN4I	GGNNCC	2 cut(s)	204, 1564
PspPI	GGNCC	1 cut(s)	1324
PstI	CTGCAG	2 cut(s)	832, 2002
RruI	TCGCGA	1 cut(s)	1425
RsaI	GTAC	3 cut(s)	868, 1263, 2165
RsaNI	GTAC	3 cut(s)	867, 1262, 2164
RseI	CAYNNNNRTG	2 cut(s)	1019, 1908
SaqAI	TTAA	9 cut(s)	96, 531, 549, 1223, 1572, 1655, 1730, 1851, 1940
SatI	GCNGC	4 cut(s)	630, 828, 1512, 1521
Sau96I	GGNCC	1 cut(s)	1324
ScaI	AGTACT	1 cut(s)	868
SchI	GAGTC	4 cut(s)	127, 809, 1310, 1984
ScrFI	CCNGG	2 cut(s)	118, 1445
SduI	GDGCHC	3 cut(s)	57, 124, 1470
SexAI	ACCWGGT	1 cut(s)	1443
SfaNI	GCATC	6 cut(s)	567, 823, 1087, 1267, 1465, 1831
SfcI	CTRYAG	3 cut(s)	828, 1594, 1998
SinI	GGWCC	1 cut(s)	1324
SmiMI	CAYNNNNRTG	2 cut(s)	1019, 1908
SmlI	CTYRAG	2 cut(s)	1265, 1571
SmoI	CTYRAG	2 cut(s)	1265, 1571
SpeI	ACTAGT	1 cut(s)	353
SphI	GCATGC	1 cut(s)	1644
SseBI	AGGCCT	1 cut(s)	983
SsiI	CCGC	6 cut(s)	100, 176, 344, 544, 627, 1979
SspMI	CTAG	5 cut(s)	354, 822, 1091, 1257, 2019
StuI	AGGCCT	1 cut(s)	983
StyD4I	CCNGG	2 cut(s)	116, 1443
StyI	CCWWGG	3 cut(s)	1151, 1625, 1921
TaaI	ACNGT	6 cut(s)	94, 242, 762, 1120, 1433, 2127
TaiI	ACGT	2 cut(s)	18, 1794
TaqI	TCGA	8 cut(s)	131, 184, 350, 449, 945, 1304, 1470, 1973
TatI	WGTACW	2 cut(s)	866, 2163
TfiI	GAWTC	6 cut(s)	196, 662, 1985, 2025, 2045, 2065
Tru1I	TTAA	9 cut(s)	96, 531, 549, 1223, 1572, 1655, 1730, 1851, 1940
Tru9I	TTAA	9 cut(s)	96, 531, 549, 1223, 1572, 1655, 1730, 1851, 1940
TscAI	CASTG	3 cut(s)	261, 1438, 1952
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	4 cut(s)	629, 827, 1511, 1520
Tsp45I	GTSAC	1 cut(s)	88
TspRI	CASTG	3 cut(s)	261, 1438, 1952
Van91I	CCANNNNNTGG	1 cut(s)	1882
Vha464I	CTTAAG	1 cut(s)	1571
VpaK11BI	GGWCC	1 cut(s)	1324
VspI	ATTAAT	1 cut(s)	1655
XapI	RAATTY	7 cut(s)	75, 277, 412, 517, 563, 923, 1086
XceI	RCATGY	5 cut(s)	1030, 1619, 1644, 1919, 2087
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1351, 1632
XmiI	GTMKAC	1 cut(s)	764
XmnI	GAANNNNTTC	1 cut(s)	1028
XspI	CTAG	5 cut(s)	354, 822, 1091, 1257, 2019
ZrmI	AGTACT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.