SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UBA_RAD5A | PF24559 | 248 - 288 | 3.1e-12 | DNA repair protein RAD5A UBA domain |
| SNF2-rel_dom | PF00176 | 476 - 836 | 1.8e-72 | SNF2-related domain |
| DEAD | PF00270 | 544 - 709 | 1.3e-06 | DEAD/DEAH box helicase |
| zf-C3HC4_3 | PF13920 | 897 - 944 | 2.9e-08 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_2 | PF13639 | 899 - 940 | 4.7e-06 | Ring finger domain |
| zf-C3HC4_2 | PF13923 | 899 - 939 | 8.5e-06 | Zinc finger, C3HC4 type (RING finger) |
| zf-C3HC4_4 | PF15227 | 900 - 930 | 9.6e-07 | zinc finger of C3HC4-type, RING |
| zf-C3HC4 | PF00097 | 900 - 939 | 1e-07 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_UBOX | PF13445 | 900 - 937 | 6.4e-08 | RING-type zinc-finger |
| Helicase_C | PF00271 | 975 - 1084 | 3.2e-23 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 3134 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2798 |
| AccBSI | CCGCTC | 1 cut(s) | 1018 |
| AccI | GTMKAC | 1 cut(s) | 1086 |
| AccII | CGCG | 1 cut(s) | 144 |
| AcoI | YGGCCR | 2 cut(s) | 119, 721 |
| AcsI | RAATTY | 9 cut(s) | 21, 33, 762, 794, 988, 1123, 1586, 3160, 3237 |
| AcuI | CTGAAG | 3 cut(s) | 291, 545, 1323 |
| AcyI | GRCGYC | 1 cut(s) | 3131 |
| AdeI | CACNNNGTG | 1 cut(s) | 2744 |
| AfaI | GTAC | 2 cut(s) | 372, 1908 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 84, 613, 1446, 1769, 1813, 2391, 2798, 2872 |
| AhlI | ACTAGT | 1 cut(s) | 1886 |
| AleI | CACNNNNGTG | 1 cut(s) | 1869 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1873, 1905 |
| Alw21I | GWGCWC | 6 cut(s) | 251, 814, 2053, 2749, 3355, 3396 |
| Alw26I | GTCTC | 4 cut(s) | 163, 825, 2248, 3098 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2363, 2957 |
| Ama87I | CYCGRG | 2 cut(s) | 776, 2776 |
| ApeKI | GCWGC | 5 cut(s) | 842, 1514, 1943, 1946, 3170 |
| ApoI | RAATTY | 9 cut(s) | 21, 33, 762, 794, 988, 1123, 1586, 3160, 3237 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2980, 3012 |
| AseI | ATTAAT | 1 cut(s) | 2192 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 150, 558, 1236, 1285, 1562, 3095 |
| AspLEI | GCGC | 4 cut(s) | 69, 144, 340, 1057 |
| AspS9I | GGNCC | 4 cut(s) | 2040, 2304, 2801, 2935 |
| AsuC2I | CCSGG | 1 cut(s) | 85 |
| AsuHPI | GGTGA | 7 cut(s) | 430, 943, 2056, 2228, 2561, 2696, 3259 |
| AsuNHI | GCTAGC | 1 cut(s) | 2603 |
| AvaI | CYCGRG | 2 cut(s) | 776, 2776 |
| AvaII | GGWCC | 3 cut(s) | 2040, 2801, 2935 |
| BamHI | GGATCC | 1 cut(s) | 3193 |
| BanII | GRGCYC | 4 cut(s) | 91, 1395, 3355, 3396 |
| BauI | CACGAG | 1 cut(s) | 2796 |
| BbsI | GAAGAC | 6 cut(s) | 1211, 1329, 1655, 2762, 2794, 3175 |
| Bbv12I | GWGCWC | 6 cut(s) | 251, 814, 2053, 2749, 3355, 3396 |
| BbvI | GCAGC | 5 cut(s) | 854, 1526, 1930, 1958, 3182 |
| BciVI | GTATCC | 1 cut(s) | 2684 |
| BclI | TGATCA | 2 cut(s) | 105, 735 |
| BcnI | CCSGG | 1 cut(s) | 85 |
| BcoDI | GTCTC | 4 cut(s) | 163, 825, 2248, 3098 |
| BcuI | ACTAGT | 1 cut(s) | 1886 |
| BfaI | CTAG | 6 cut(s) | 1625, 1676, 1887, 2604, 3327, 3381 |
| BfmI | CTRYAG | 4 cut(s) | 1011, 1944, 2131, 3168 |
| BfuI | GTATCC | 1 cut(s) | 2684 |
| BglII | AGATCT | 1 cut(s) | 2125 |
| BisI | GCNGC | 8 cut(s) | 284, 843, 1362, 1515, 1944, 1947, 2866, 3171 |
| BlpI | GCTNAGC | 1 cut(s) | 287 |
| BlsI | GCNGC | 8 cut(s) | 285, 844, 1363, 1516, 1945, 1948, 2867, 3172 |
| Bme18I | GGWCC | 3 cut(s) | 2040, 2801, 2935 |
| BmeT110I | CYCGRG | 2 cut(s) | 776, 2776 |
| BmgT120I | GGNCC | 4 cut(s) | 2040, 2304, 2801, 2935 |
| BmiI | GGNNCC | 9 cut(s) | 195, 315, 471, 501, 618, 1288, 1392, 2042, 3195 |
| BmrI | ACTGGG | 1 cut(s) | 2182 |
| BmsI | GCATC | 5 cut(s) | 270, 1621, 2350, 2602, 3182 |
| BmtI | GCTAGC | 1 cut(s) | 2607 |
| BmuI | ACTGGG | 1 cut(s) | 2182 |
| BpiI | GAAGAC | 6 cut(s) | 1211, 1329, 1655, 2762, 2794, 3175 |
| BpmI | CTGGAG | 2 cut(s) | 1176, 1194 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2052 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 287 |
| BpuMI | CCSGG | 1 cut(s) | 85 |
| Bsa29I | ATCGAT | 1 cut(s) | 278 |
| BsaBI | GATNNNNATC | 1 cut(s) | 233 |
| BsaHI | GRCGYC | 1 cut(s) | 3131 |
| BsaI | GGTCTC | 3 cut(s) | 825, 2248, 3098 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1029, 1059, 1425, 1455, 2086, 2116, 2301, 2331 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 84, 613, 1446, 1769, 1813, 2391, 2798, 2872 |
| Bse1I | ACTGG | 7 cut(s) | 602, 1807, 1997, 2101, 2177, 2407, 3148 |
| Bse3DI | GCAATG | 2 cut(s) | 1259, 2077 |
| Bse8I | GATNNNNATC | 1 cut(s) | 233 |
| BseCI | ATCGAT | 1 cut(s) | 278 |
| BseJI | GATNNNNATC | 1 cut(s) | 233 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 84, 613, 1446, 1769, 1813, 2391, 2798, 2872 |
| BseMI | GCAATG | 2 cut(s) | 1259, 2077 |
| BseNI | ACTGG | 7 cut(s) | 602, 1807, 1997, 2101, 2177, 2407, 3148 |
| BseXI | GCAGC | 5 cut(s) | 854, 1526, 1930, 1958, 3182 |
| BseYI | CCCAGC | 3 cut(s) | 1509, 2639, 2781 |
| BsgI | GTGCAG | 1 cut(s) | 1251 |
| Bsh1236I | CGCG | 1 cut(s) | 144 |
| Bsh1285I | CGRYCG | 2 cut(s) | 102, 770 |
| BshVI | ATCGAT | 1 cut(s) | 278 |
| BsiEI | CGRYCG | 2 cut(s) | 102, 770 |
| BsiHKAI | GWGCWC | 6 cut(s) | 251, 814, 2053, 2749, 3355, 3396 |
| BsiHKCI | CYCGRG | 2 cut(s) | 776, 2776 |
| BsiSI | CCGG | 3 cut(s) | 84, 122, 3348 |
| BslFI | GGGAC | 8 cut(s) | 929, 1016, 1054, 1653, 1773, 1875, 2621, 2685 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 84, 613, 1446, 1769, 1813, 2391, 2798, 2872 |
| BsmAI | GTCTC | 4 cut(s) | 163, 825, 2248, 3098 |
| BsmBI | CGTCTC | 1 cut(s) | 163 |
| BsmFI | GGGAC | 8 cut(s) | 929, 1016, 1054, 1653, 1773, 1875, 2621, 2685 |
| BsmI | GAATGC | 2 cut(s) | 827, 844 |
| Bso31I | GGTCTC | 3 cut(s) | 825, 2248, 3098 |
| BsoBI | CYCGRG | 2 cut(s) | 776, 2776 |
| Bsp1286I | GDGCHC | 8 cut(s) | 91, 251, 814, 1395, 2053, 2749, 3355, 3396 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 287 |
| Bsp19I | CCATGG | 3 cut(s) | 27, 2162, 3197 |
| BspDI | ATCGAT | 1 cut(s) | 278 |
| BspFNI | CGCG | 1 cut(s) | 144 |
| BspHI | TCATGA | 2 cut(s) | 649, 2511 |
| BspLI | GGNNCC | 9 cut(s) | 195, 315, 471, 501, 618, 1288, 1392, 2042, 3195 |
| BspMAI | CTGCAG | 2 cut(s) | 1948, 3172 |
| BspOI | GCTAGC | 1 cut(s) | 2607 |
| BspTNI | GGTCTC | 3 cut(s) | 825, 2248, 3098 |
| BsrBI | CCGCTC | 1 cut(s) | 1018 |
| BsrDI | GCAATG | 2 cut(s) | 1259, 2077 |
| BsrI | ACTGG | 7 cut(s) | 602, 1807, 1997, 2101, 2177, 2407, 3148 |
| BssNI | GRCGYC | 1 cut(s) | 3131 |
| BssSI | CACGAG | 1 cut(s) | 2796 |
| BssT1I | CCWWGG | 6 cut(s) | 27, 204, 1893, 2044, 2162, 3197 |
| Bst2BI | CACGAG | 1 cut(s) | 2796 |
| Bst4CI | ACNGT | 8 cut(s) | 103, 953, 1045, 1654, 2355, 3265, 3271, 3298 |
| Bst6I | CTCTTC | 7 cut(s) | 237, 741, 1687, 1718, 2652, 3017, 3022 |
| BstACI | GRCGYC | 1 cut(s) | 3131 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1265 |
| BstC8I | GCNNGC | 7 cut(s) | 267, 1029, 1266, 2583, 2605, 3225, 3311 |
| BstDSI | CCRYGG | 3 cut(s) | 27, 2162, 3197 |
| BstFNI | CGCG | 1 cut(s) | 144 |
| BstHHI | GCGC | 4 cut(s) | 69, 144, 340, 1057 |
| BstMAI | GTCTC | 4 cut(s) | 163, 825, 2248, 3098 |
| BstMCI | CGRYCG | 2 cut(s) | 102, 770 |
| BstNSI | RCATGY | 1 cut(s) | 2156 |
| BstSFI | CTRYAG | 4 cut(s) | 1011, 1944, 2131, 3168 |
| BstUI | CGCG | 1 cut(s) | 144 |
| BstV1I | GCAGC | 5 cut(s) | 854, 1526, 1930, 1958, 3182 |
| BstV2I | GAAGAC | 6 cut(s) | 1211, 1329, 1655, 2762, 2794, 3175 |
| BstX2I | RGATCY | 7 cut(s) | 383, 431, 530, 2125, 3001, 3012, 3193 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2710 |
| BstYI | RGATCY | 7 cut(s) | 383, 431, 530, 2125, 3001, 3012, 3193 |
| Bsu15I | ATCGAT | 1 cut(s) | 278 |
| BsuI | GTATCC | 1 cut(s) | 2684 |
| BsuTUI | ATCGAT | 1 cut(s) | 278 |
| BtgI | CCRYGG | 3 cut(s) | 27, 2162, 3197 |
| BtgZI | GCGATG | 4 cut(s) | 317, 1649, 2058, 3227 |
| BtsI | GCAGTG | 1 cut(s) | 2492 |
| BtsIMutI | CAGTG | 5 cut(s) | 1814, 2258, 2492, 2990, 3357 |
| Cac8I | GCNNGC | 7 cut(s) | 267, 1029, 1266, 2583, 2605, 3225, 3311 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2363, 2957 |
| CciI | TCATGA | 2 cut(s) | 649, 2511 |
| CfoI | GCGC | 4 cut(s) | 69, 144, 340, 1057 |
| Cfr13I | GGNCC | 4 cut(s) | 2040, 2304, 2801, 2935 |
| ClaI | ATCGAT | 1 cut(s) | 278 |
| CsiI | ACCWGGT | 2 cut(s) | 1139, 1684 |
| Csp6I | GTAC | 2 cut(s) | 371, 1907 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 972, 1007 |
| CviQI | GTAC | 2 cut(s) | 371, 1907 |
| DraIII | CACNNNGTG | 1 cut(s) | 2744 |
| EaeI | YGGCCR | 2 cut(s) | 119, 721 |
| Eam1104I | CTCTTC | 7 cut(s) | 237, 741, 1687, 1718, 2652, 3017, 3022 |
| EarI | CTCTTC | 7 cut(s) | 237, 741, 1687, 1718, 2652, 3017, 3022 |
| Ecl136II | GAGCTC | 2 cut(s) | 3353, 3394 |
| Eco130I | CCWWGG | 6 cut(s) | 27, 204, 1893, 2044, 2162, 3197 |
| Eco147I | AGGCCT | 1 cut(s) | 2203 |
| Eco24I | GRGCYC | 4 cut(s) | 91, 1395, 3355, 3396 |
| Eco31I | GGTCTC | 3 cut(s) | 825, 2248, 3098 |
| Eco47I | GGWCC | 3 cut(s) | 2040, 2801, 2935 |
| Eco53kI | GAGCTC | 2 cut(s) | 3353, 3394 |
| Eco57I | CTGAAG | 3 cut(s) | 291, 545, 1323 |
| Eco88I | CYCGRG | 2 cut(s) | 776, 2776 |
| EcoICRI | GAGCTC | 2 cut(s) | 3353, 3394 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2040 |
| EcoRI | GAATTC | 2 cut(s) | 33, 3237 |
| EcoT14I | CCWWGG | 6 cut(s) | 27, 204, 1893, 2044, 2162, 3197 |
| EcoT38I | GRGCYC | 4 cut(s) | 91, 1395, 3355, 3396 |
| ErhI | CCWWGG | 6 cut(s) | 27, 204, 1893, 2044, 2162, 3197 |
| Esp3I | CGTCTC | 1 cut(s) | 163 |
| FaqI | GGGAC | 8 cut(s) | 929, 1016, 1054, 1653, 1773, 1875, 2621, 2685 |
| FauI | CCCGC | 1 cut(s) | 1011 |
| FauNDI | CATATG | 2 cut(s) | 1930, 2705 |
| FbaI | TGATCA | 2 cut(s) | 105, 735 |
| FblI | GTMKAC | 1 cut(s) | 1086 |
| Fnu4HI | GCNGC | 8 cut(s) | 284, 843, 1362, 1515, 1944, 1947, 2866, 3171 |
| FriOI | GRGCYC | 4 cut(s) | 91, 1395, 3355, 3396 |
| Fsp4HI | GCNGC | 8 cut(s) | 284, 843, 1362, 1515, 1944, 1947, 2866, 3171 |
| FspBI | CTAG | 6 cut(s) | 1625, 1676, 1887, 2604, 3327, 3381 |
| GlaI | GCGC | 4 cut(s) | 68, 143, 339, 1056 |
| GluI | GCNGC | 8 cut(s) | 284, 843, 1362, 1515, 1944, 1947, 2866, 3171 |
| GsaI | CCCAGC | 3 cut(s) | 1513, 2643, 2785 |
| GsuI | CTGGAG | 2 cut(s) | 1176, 1194 |
| HapII | CCGG | 3 cut(s) | 84, 122, 3348 |
| HhaI | GCGC | 4 cut(s) | 69, 144, 340, 1057 |
| Hin1I | GRCGYC | 1 cut(s) | 3131 |
| Hin6I | GCGC | 4 cut(s) | 67, 142, 338, 1055 |
| HinP1I | GCGC | 4 cut(s) | 67, 142, 338, 1055 |
| HincII | GTYRAC | 3 cut(s) | 1102, 1990, 3129 |
| HindII | GTYRAC | 3 cut(s) | 1102, 1990, 3129 |
| HindIII | AAGCTT | 3 cut(s) | 149, 671, 2579 |
| HpaI | GTTAAC | 1 cut(s) | 1102 |
| HpaII | CCGG | 3 cut(s) | 84, 122, 3348 |
| HphI | GGTGA | 7 cut(s) | 430, 943, 2056, 2228, 2561, 2696, 3259 |
| Hpy99I | CGWCG | 5 cut(s) | 181, 184, 631, 916, 3136 |
| HpyCH4III | ACNGT | 8 cut(s) | 103, 953, 1045, 1654, 2355, 3265, 3271, 3298 |
| HpyCH4IV | ACGT | 5 cut(s) | 629, 1216, 1234, 3131, 3180 |
| HpySE526I | ACGT | 5 cut(s) | 629, 1216, 1234, 3131, 3180 |
| Hsp92I | GRCGYC | 1 cut(s) | 3131 |
| HspAI | GCGC | 4 cut(s) | 67, 142, 338, 1055 |
| Ksp22I | TGATCA | 2 cut(s) | 105, 735 |
| KspAI | GTTAAC | 1 cut(s) | 1102 |
| LmnI | GCTCC | 7 cut(s) | 254, 616, 1255, 1390, 3220, 3350, 3391 |
| Lsp1109I | GCAGC | 5 cut(s) | 854, 1526, 1930, 1958, 3182 |
| LweI | GCATC | 5 cut(s) | 270, 1621, 2350, 2602, 3182 |
| MabI | ACCWGGT | 2 cut(s) | 1139, 1684 |
| MaeI | CTAG | 6 cut(s) | 1625, 1676, 1887, 2604, 3327, 3381 |
| MaeII | ACGT | 5 cut(s) | 629, 1216, 1234, 3131, 3180 |
| MaeIII | GTNAC | 2 cut(s) | 1048, 3265 |
| MbiI | CCGCTC | 1 cut(s) | 1018 |
| MfeI | CAATTG | 1 cut(s) | 1662 |
| MflI | RGATCY | 7 cut(s) | 383, 431, 530, 2125, 3001, 3012, 3193 |
| MhlI | GDGCHC | 8 cut(s) | 91, 251, 814, 1395, 2053, 2749, 3355, 3396 |
| MlyI | GAGTC | 4 cut(s) | 140, 575, 1343, 2524 |
| MmeI | TCCRAC | 6 cut(s) | 361, 1015, 1616, 2348, 2498, 2798 |
| MroXI | GAANNNNTTC | 6 cut(s) | 150, 558, 1236, 1285, 1562, 3095 |
| MslI | CAYNNNNRTG | 3 cut(s) | 47, 1869, 2448 |
| MspA1I | CMGCKG | 1 cut(s) | 845 |
| MspI | CCGG | 3 cut(s) | 84, 122, 3348 |
| MunI | CAATTG | 1 cut(s) | 1662 |
| Mva1269I | GAATGC | 2 cut(s) | 827, 844 |
| MvnI | CGCG | 1 cut(s) | 144 |
| NciI | CCSGG | 1 cut(s) | 85 |
| NcoI | CCATGG | 3 cut(s) | 27, 2162, 3197 |
| NdeI | CATATG | 2 cut(s) | 1930, 2705 |
| NheI | GCTAGC | 1 cut(s) | 2603 |
| NlaIV | GGNNCC | 9 cut(s) | 195, 315, 471, 501, 618, 1288, 1392, 2042, 3195 |
| NmeAIII | GCCGAG | 2 cut(s) | 749, 2669 |
| NmuCI | GTSAC | 1 cut(s) | 3265 |
| NspI | RCATGY | 1 cut(s) | 2156 |
| OliI | CACNNNNGTG | 1 cut(s) | 1869 |
| PaeR7I | CTCGAG | 1 cut(s) | 2776 |
| PagI | TCATGA | 2 cut(s) | 649, 2511 |
| PceI | AGGCCT | 1 cut(s) | 2203 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 515 |
| PctI | GAATGC | 2 cut(s) | 827, 844 |
| PdmI | GAANNNNTTC | 6 cut(s) | 150, 558, 1236, 1285, 1562, 3095 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2798 |
| PfoI | TCCNGGA | 1 cut(s) | 858 |
| PkrI | GCNGC | 8 cut(s) | 285, 844, 1363, 1516, 1945, 1948, 2867, 3172 |
| PleI | GAGTC | 4 cut(s) | 139, 574, 1342, 2523 |
| PpsI | GAGTC | 4 cut(s) | 139, 574, 1342, 2523 |
| PpuMI | RGGWCCY | 1 cut(s) | 2040 |
| PshBI | ATTAAT | 1 cut(s) | 2192 |
| Psp124BI | GAGCTC | 2 cut(s) | 3355, 3396 |
| Psp5II | RGGWCCY | 1 cut(s) | 2040 |
| PspFI | CCCAGC | 3 cut(s) | 1509, 2639, 2781 |
| PspN4I | GGNNCC | 9 cut(s) | 195, 315, 471, 501, 618, 1288, 1392, 2042, 3195 |
| PspPI | GGNCC | 4 cut(s) | 2040, 2304, 2801, 2935 |
| PspPPI | RGGWCCY | 1 cut(s) | 2040 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3297, 3329 |
| PstI | CTGCAG | 2 cut(s) | 1948, 3172 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2363, 2957 |
| PsuI | RGATCY | 7 cut(s) | 383, 431, 530, 2125, 3001, 3012, 3193 |
| PvuII | CAGCTG | 1 cut(s) | 845 |
| RsaI | GTAC | 2 cut(s) | 372, 1908 |
| RsaNI | GTAC | 2 cut(s) | 371, 1907 |
| RseI | CAYNNNNRTG | 3 cut(s) | 47, 1869, 2448 |
| SacI | GAGCTC | 2 cut(s) | 3355, 3396 |
| SatI | GCNGC | 8 cut(s) | 284, 843, 1362, 1515, 1944, 1947, 2866, 3171 |
| Sau96I | GGNCC | 4 cut(s) | 2040, 2304, 2801, 2935 |
| SchI | GAGTC | 4 cut(s) | 140, 575, 1343, 2524 |
| SduI | GDGCHC | 8 cut(s) | 91, 251, 814, 1395, 2053, 2749, 3355, 3396 |
| SexAI | ACCWGGT | 2 cut(s) | 1139, 1684 |
| SfaNI | GCATC | 5 cut(s) | 270, 1621, 2350, 2602, 3182 |
| SfcI | CTRYAG | 4 cut(s) | 1011, 1944, 2131, 3168 |
| Sfr274I | CTCGAG | 1 cut(s) | 2776 |
| SinI | GGWCC | 3 cut(s) | 2040, 2801, 2935 |
| SlaI | CTCGAG | 1 cut(s) | 2776 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 47, 1869, 2448 |
| SmlI | CTYRAG | 1 cut(s) | 2776 |
| SmoI | CTYRAG | 1 cut(s) | 2776 |
| SpeI | ACTAGT | 1 cut(s) | 1886 |
| SseBI | AGGCCT | 1 cut(s) | 2203 |
| SspI | AATATT | 2 cut(s) | 1228, 2592 |
| SspMI | CTAG | 6 cut(s) | 1625, 1676, 1887, 2604, 3327, 3381 |
| SstI | GAGCTC | 2 cut(s) | 3355, 3396 |
| StuI | AGGCCT | 1 cut(s) | 2203 |
| StyI | CCWWGG | 6 cut(s) | 27, 204, 1893, 2044, 2162, 3197 |
| TaaI | ACNGT | 8 cut(s) | 103, 953, 1045, 1654, 2355, 3265, 3271, 3298 |
| TaiI | ACGT | 5 cut(s) | 632, 1219, 1237, 3134, 3183 |
| TaqII | GACCGA | 1 cut(s) | 756 |
| TatI | WGTACW | 1 cut(s) | 1906 |
| TauI | GCSGC | 3 cut(s) | 286, 1364, 2868 |
| TscAI | CASTG | 5 cut(s) | 1814, 2265, 2492, 2990, 3364 |
| TseFI | GTSAC | 1 cut(s) | 3265 |
| TseI | GCWGC | 5 cut(s) | 842, 1514, 1943, 1946, 3170 |
| Tsp45I | GTSAC | 1 cut(s) | 3265 |
| TspGWI | ACGGA | 1 cut(s) | 2666 |
| TspRI | CASTG | 5 cut(s) | 1814, 2265, 2492, 2990, 3364 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2798 |
| VpaK11BI | GGWCC | 3 cut(s) | 2040, 2801, 2935 |
| VspI | ATTAAT | 1 cut(s) | 2192 |
| XapI | RAATTY | 9 cut(s) | 21, 33, 762, 794, 988, 1123, 1586, 3160, 3237 |
| XceI | RCATGY | 1 cut(s) | 2156 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2169 |
| XhoI | CTCGAG | 1 cut(s) | 2776 |
| XmiI | GTMKAC | 1 cut(s) | 1086 |
| XmnI | GAANNNNTTC | 6 cut(s) | 150, 558, 1236, 1285, 1562, 3095 |
| XspI | CTAG | 6 cut(s) | 1625, 1676, 1887, 2604, 3327, 3381 |
| ZraI | GACGTC | 1 cut(s) | 3132 |