Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Forward (+)

39471230 .. 39471526

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0335900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGCGAAAGACTAAGCAGCGTGGTGTCCAAAATCATGGGCAGAAACGGCGTCGTCCACCGTTCTGTCGCCTCTTCTCATCGACTCTGCGCCGGCATGGGCCTCCCCGTCGGCAAACACATCGTCCTCGACAAACCCCTCCCCATCAACGACGAGCTCGTCTGGGACAACGACACGTTGTTTCCCCAACCCTGTATCGATCGCATCACCCACACCGACGGAAAGTGCAGAGGCGAGGAGGTTAGAAACATCGTCGTCAGAGTCGGAAGAGATGAGGCGGTCGACGATGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

98

Amino Acids

10.83

Weight (kDa)

5.75

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	51
AflIII	ACRYGT	1 cut(s)	174
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	159
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	18
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BfaI	CTAG	1 cut(s)	295
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	100
BmsI	GCATC	1 cut(s)	213
Bsa29I	ATCGAT	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	51
Bse118I	RCCGGY	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	30
BsgI	GTGCAG	1 cut(s)	247
Bsh1285I	CGRYCG	2 cut(s)	202, 282
BshFI	GGCC	1 cut(s)	102
BshVI	ATCGAT	1 cut(s)	198
BsiEI	CGRYCG	2 cut(s)	202, 282
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	102
BspDI	ATCGAT	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	1 cut(s)	199
BssNI	GRCGYC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	2 cut(s)	79, 262
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMCI	CGRYCG	2 cut(s)	202, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	102
BsuTUI	ATCGAT	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	1 cut(s)	40
CviAII	CATG	2 cut(s)	37, 97
CviJI	RGCY	2 cut(s)	102, 157
CviKI_1	RGCY	2 cut(s)	102, 157
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
Eam1104I	CTCTTC	2 cut(s)	79, 262
EarI	CTCTTC	2 cut(s)	79, 262
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	2 cut(s)	40, 100
FaiI	YATR	2 cut(s)	38, 98
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	36, 96
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	19
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	295
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	40, 100
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	2 cut(s)	84, 261
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	58, 283
Hpy188I	TCNGA	2 cut(s)	260, 266
Hpy8I	GTNNAC	2 cut(s)	58, 283
Hpy99I	CGWCG	6 cut(s)	56, 113, 155, 221, 257, 287
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	40, 100
HspAI	GCGC	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	3 cut(s)	106, 148, 205
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	295
MaeII	ACGT	1 cut(s)	176
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	66, 279
MhlI	GDGCHC	1 cut(s)	159
MlyI	GAGTC	2 cut(s)	78, 270
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	9 cut(s)	82, 113, 137, 149, 224, 229, 232, 268, 283
MroNI	GCCGGC	1 cut(s)	92
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	48
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	1 cut(s)	199
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	40, 100
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PdiI	GCCGGC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	20
Ple19I	CGATCG	1 cut(s)	202
PleI	GAGTC	2 cut(s)	78, 269
PpsI	GAGTC	2 cut(s)	78, 269
Psp124BI	GAGCTC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	100
PvuI	CGATCG	1 cut(s)	202
SacI	GAGCTC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	281
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	2 cut(s)	78, 270
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	3 cut(s)	159, 179, 243
SfaNI	GCATC	1 cut(s)	213
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	295
SstI	GAGCTC	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	4 cut(s)	82, 129, 198, 282
TseI	GCWGC	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	234
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.