SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HIRAN | PF08797 | 108 - 200 | 3.4e-12 | HIRAN domain |
| SNF2-rel_dom | PF00176 | 298 - 653 | 7.1e-55 | SNF2-related domain |
| zf-RING_UBOX | PF13445 | 709 - 742 | 3.3e-08 | RING-type zinc-finger |
| zf-C3HC4 | PF00097 | 709 - 755 | 1.9e-06 | Zinc finger, C3HC4 type (RING finger) |
| zf-C3HC4_2 | PF13923 | 709 - 734 | 2.3e-06 | Zinc finger, C3HC4 type (RING finger) |
| zf-C3HC4_4 | PF15227 | 709 - 740 | 5.4e-06 | zinc finger of C3HC4-type, RING |
| Helicase_C | PF00271 | 791 - 900 | 1.3e-15 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1876 |
| AccI | GTMKAC | 2 cut(s) | 764, 2701 |
| AccII | CGCG | 2 cut(s) | 15, 126 |
| AccIII | TCCGGA | 1 cut(s) | 199 |
| AciI | CCGC | 5 cut(s) | 176, 344, 544, 627, 2557 |
| AclI | AACGTT | 1 cut(s) | 816 |
| AclWI | GGATC | 7 cut(s) | 1196, 1492, 1670, 2147, 2457, 2639, 2652 |
| AcoI | YGGCCR | 2 cut(s) | 84, 2826 |
| AcsI | RAATTY | 9 cut(s) | 75, 161, 277, 412, 517, 563, 923, 1086, 2388 |
| AcuI | CTGAAG | 6 cut(s) | 780, 1833, 2378, 2530, 2619, 2753 |
| AcyI | GRCGYC | 1 cut(s) | 789 |
| AdeI | CACNNNGTG | 1 cut(s) | 2171 |
| AfaI | GTAC | 3 cut(s) | 868, 1263, 2160 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1082, 1157, 1235, 1876 |
| AflII | CTTAAG | 2 cut(s) | 1565, 2614 |
| AflIII | ACRYGT | 3 cut(s) | 13, 1026, 2077 |
| AhlI | ACTAGT | 1 cut(s) | 353 |
| AjnI | CCWGG | 2 cut(s) | 1437, 2319 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 423, 455, 1899, 1931 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 98, 130, 2183, 2215 |
| Alw21I | GWGCWC | 3 cut(s) | 116, 1464, 2292 |
| Alw26I | GTCTC | 3 cut(s) | 262, 774, 2209 |
| AlwI | GGATC | 7 cut(s) | 1196, 1492, 1670, 2147, 2457, 2639, 2652 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2405 |
| Aor13HI | TCCGGA | 1 cut(s) | 199 |
| AoxI | GGCC | 7 cut(s) | 54, 84, 887, 981, 1712, 2226, 2826 |
| ApaI | GGGCCC | 1 cut(s) | 2230 |
| ApeKI | GCWGC | 6 cut(s) | 629, 827, 1505, 2621, 2663, 2782 |
| ApoI | RAATTY | 9 cut(s) | 75, 161, 277, 412, 517, 563, 923, 1086, 2388 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2428, 2460 |
| AseI | ATTAAT | 2 cut(s) | 1649, 2247 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1028, 2388, 2543 |
| AspLEI | GCGC | 1 cut(s) | 1282 |
| AspS9I | GGNCC | 4 cut(s) | 1321, 2226, 2227, 2839 |
| AsuC2I | CCSGG | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 4 cut(s) | 277, 605, 670, 1685 |
| AvaII | GGWCC | 2 cut(s) | 1321, 2839 |
| BaeGI | GKGCMC | 1 cut(s) | 2230 |
| BamHI | GGATCC | 1 cut(s) | 2644 |
| BanII | GRGCYC | 4 cut(s) | 116, 124, 2230, 2292 |
| BauI | CACGAG | 1 cut(s) | 109 |
| BbsI | GAAGAC | 6 cut(s) | 636, 792, 795, 1121, 1587, 2343 |
| Bbv12I | GWGCWC | 3 cut(s) | 116, 1464, 2292 |
| BbvI | GCAGC | 6 cut(s) | 616, 814, 1492, 2633, 2650, 2794 |
| BceAI | ACGGC | 2 cut(s) | 71, 99 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2600, 2634 |
| BciT130I | CCWGG | 2 cut(s) | 1439, 2321 |
| BclI | TGATCA | 1 cut(s) | 138 |
| BcnI | CCSGG | 1 cut(s) | 118 |
| BcoDI | GTCTC | 3 cut(s) | 262, 774, 2209 |
| BcuI | ACTAGT | 1 cut(s) | 353 |
| BfaI | CTAG | 5 cut(s) | 354, 1091, 1257, 2013, 2775 |
| BfmI | CTRYAG | 2 cut(s) | 828, 1588 |
| BfrI | CTTAAG | 2 cut(s) | 1565, 2614 |
| BglII | AGATCT | 1 cut(s) | 2460 |
| BisI | GCNGC | 6 cut(s) | 630, 828, 1506, 2622, 2664, 2783 |
| BlsI | GCNGC | 6 cut(s) | 631, 829, 1507, 2623, 2665, 2784 |
| BmcAI | AGTACT | 1 cut(s) | 868 |
| Bme1390I | CCNGG | 3 cut(s) | 118, 1439, 2321 |
| Bme18I | GGWCC | 2 cut(s) | 1321, 2839 |
| BmgT120I | GGNCC | 4 cut(s) | 1321, 2226, 2227, 2839 |
| BmiI | GGNNCC | 5 cut(s) | 204, 858, 1558, 2228, 2646 |
| BmrFI | CCNGG | 3 cut(s) | 118, 1439, 2321 |
| BmrI | ACTGGG | 2 cut(s) | 1118, 1639 |
| BmsI | GCATC | 7 cut(s) | 567, 823, 1087, 1267, 1825, 2427, 2633 |
| BmuI | ACTGGG | 2 cut(s) | 1118, 1639 |
| BpiI | GAAGAC | 6 cut(s) | 636, 792, 795, 1121, 1587, 2343 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1509 |
| BpuEI | CTTGAG | 3 cut(s) | 857, 1250, 2188 |
| BpuMI | CCSGG | 1 cut(s) | 118 |
| Bsa29I | ATCGAT | 2 cut(s) | 1718, 2821 |
| BsaAI | YACGTR | 1 cut(s) | 1413 |
| BsaBI | GATNNNNATC | 2 cut(s) | 666, 2505 |
| BsaHI | GRCGYC | 1 cut(s) | 789 |
| BsaI | GGTCTC | 1 cut(s) | 262 |
| BsaJI | CCNNGG | 9 cut(s) | 117, 538, 1151, 1347, 1619, 1915, 2230, 2648, 2667 |
| BsaWI | WCCGGW | 1 cut(s) | 199 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 98, 128, 891, 921, 2076, 2106, 2183, 2213 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1082, 1157, 1235, 1876 |
| Bse1I | ACTGG | 5 cut(s) | 1113, 1451, 1634, 1870, 2345 |
| Bse3DI | GCAATG | 2 cut(s) | 1107, 1534 |
| Bse8I | GATNNNNATC | 2 cut(s) | 666, 2505 |
| BseAI | TCCGGA | 1 cut(s) | 199 |
| BseBI | CCWGG | 2 cut(s) | 1439, 2321 |
| BseCI | ATCGAT | 2 cut(s) | 1718, 2821 |
| BseDI | CCNNGG | 9 cut(s) | 117, 538, 1151, 1347, 1619, 1915, 2230, 2648, 2667 |
| BseGI | GGATG | 7 cut(s) | 292, 733, 921, 967, 1282, 2280, 2707 |
| BseJI | GATNNNNATC | 2 cut(s) | 666, 2505 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1082, 1157, 1235, 1876 |
| BseMI | GCAATG | 2 cut(s) | 1107, 1534 |
| BseMII | CTCAG | 3 cut(s) | 287, 1047, 2277 |
| BseNI | ACTGG | 5 cut(s) | 1113, 1451, 1634, 1870, 2345 |
| BseRI | GAGGAG | 2 cut(s) | 1095, 2684 |
| BseSI | GKGCMC | 1 cut(s) | 2230 |
| BseX3I | CGGCCG | 1 cut(s) | 84 |
| BseXI | GCAGC | 6 cut(s) | 616, 814, 1492, 2633, 2650, 2794 |
| BseYI | CCCAGC | 1 cut(s) | 975 |
| BsgI | GTGCAG | 2 cut(s) | 2206, 2640 |
| Bsh1236I | CGCG | 2 cut(s) | 15, 126 |
| Bsh1285I | CGRYCG | 2 cut(s) | 87, 2825 |
| BshFI | GGCC | 7 cut(s) | 56, 86, 889, 983, 1714, 2228, 2828 |
| BshVI | ATCGAT | 2 cut(s) | 1718, 2821 |
| BsiEI | CGRYCG | 2 cut(s) | 87, 2825 |
| BsiHKAI | GWGCWC | 3 cut(s) | 116, 1464, 2292 |
| BsiSI | CCGG | 3 cut(s) | 117, 200, 308 |
| BslFI | GGGAC | 4 cut(s) | 20, 1119, 2112, 2789 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1082, 1157, 1235, 1876 |
| BsmAI | GTCTC | 3 cut(s) | 262, 774, 2209 |
| BsmBI | CGTCTC | 1 cut(s) | 774 |
| BsmFI | GGGAC | 4 cut(s) | 20, 1119, 2112, 2789 |
| BsnI | GGCC | 7 cut(s) | 56, 86, 889, 983, 1714, 2228, 2828 |
| Bso31I | GGTCTC | 1 cut(s) | 262 |
| Bsp120I | GGGCCC | 1 cut(s) | 2226 |
| Bsp1286I | GDGCHC | 5 cut(s) | 116, 124, 1464, 2230, 2292 |
| Bsp13I | TCCGGA | 1 cut(s) | 199 |
| Bsp19I | CCATGG | 2 cut(s) | 1619, 2648 |
| BspACI | CCGC | 5 cut(s) | 176, 344, 544, 627, 2557 |
| BspANI | GGCC | 7 cut(s) | 56, 86, 889, 983, 1714, 2228, 2828 |
| BspCNI | CTCAG | 3 cut(s) | 286, 1046, 2278 |
| BspDI | ATCGAT | 2 cut(s) | 1718, 2821 |
| BspEI | TCCGGA | 1 cut(s) | 199 |
| BspFNI | CGCG | 2 cut(s) | 15, 126 |
| BspHI | TCATGA | 1 cut(s) | 2035 |
| BspLI | GGNNCC | 5 cut(s) | 204, 858, 1558, 2228, 2646 |
| BspMAI | CTGCAG | 1 cut(s) | 832 |
| BspPI | GGATC | 7 cut(s) | 1196, 1492, 1670, 2147, 2457, 2639, 2652 |
| BspTI | CTTAAG | 2 cut(s) | 1565, 2614 |
| BspTNI | GGTCTC | 1 cut(s) | 262 |
| BsrDI | GCAATG | 2 cut(s) | 1107, 1534 |
| BsrI | ACTGG | 5 cut(s) | 1113, 1451, 1634, 1870, 2345 |
| BssECI | CCNNGG | 9 cut(s) | 117, 538, 1151, 1347, 1619, 1915, 2230, 2648, 2667 |
| BssNAI | GTATAC | 1 cut(s) | 765 |
| BssNI | GRCGYC | 1 cut(s) | 789 |
| BssSI | CACGAG | 1 cut(s) | 109 |
| BssT1I | CCWWGG | 6 cut(s) | 538, 1151, 1619, 1915, 2230, 2648 |
| Bst1107I | GTATAC | 1 cut(s) | 765 |
| Bst2BI | CACGAG | 1 cut(s) | 109 |
| Bst2UI | CCWGG | 2 cut(s) | 1439, 2321 |
| Bst4CI | ACNGT | 9 cut(s) | 94, 242, 762, 1120, 1213, 1427, 2122, 2716, 2746 |
| Bst6I | CTCTTC | 3 cut(s) | 969, 1184, 2465 |
| BstACI | GRCGYC | 1 cut(s) | 789 |
| BstAFI | CTTAAG | 2 cut(s) | 1565, 2614 |
| BstBAI | YACGTR | 1 cut(s) | 1413 |
| BstC8I | GCNNGC | 4 cut(s) | 124, 1636, 2010, 2759 |
| BstDEI | CTNAG | 6 cut(s) | 273, 1033, 1185, 1509, 2286, 2355 |
| BstDSI | CCRYGG | 3 cut(s) | 1347, 1619, 2648 |
| BstF5I | GGATG | 7 cut(s) | 292, 733, 921, 967, 1282, 2280, 2707 |
| BstFNI | CGCG | 2 cut(s) | 15, 126 |
| BstHHI | GCGC | 1 cut(s) | 1282 |
| BstMAI | GTCTC | 3 cut(s) | 262, 774, 2209 |
| BstMCI | CGRYCG | 2 cut(s) | 87, 2825 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 833, 1502, 1514, 1615, 2142, 2556 |
| BstNI | CCWGG | 2 cut(s) | 1439, 2321 |
| BstNSI | RCATGY | 5 cut(s) | 1030, 1613, 1638, 2081, 2761 |
| BstSCI | CCNGG | 3 cut(s) | 116, 1437, 2319 |
| BstSFI | CTRYAG | 2 cut(s) | 828, 1588 |
| BstSLI | GKGCMC | 1 cut(s) | 2230 |
| BstSNI | TACGTA | 1 cut(s) | 1413 |
| BstUI | CGCG | 2 cut(s) | 15, 126 |
| BstV1I | GCAGC | 6 cut(s) | 616, 814, 1492, 2633, 2650, 2794 |
| BstV2I | GAAGAC | 6 cut(s) | 636, 792, 795, 1121, 1587, 2343 |
| BstX2I | RGATCY | 5 cut(s) | 1201, 1484, 2449, 2460, 2644 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 489 |
| BstYI | RGATCY | 5 cut(s) | 1201, 1484, 2449, 2460, 2644 |
| BstZ17I | GTATAC | 1 cut(s) | 765 |
| BstZI | CGGCCG | 1 cut(s) | 84 |
| Bsu15I | ATCGAT | 2 cut(s) | 1718, 2821 |
| BsuRI | GGCC | 7 cut(s) | 56, 86, 889, 983, 1714, 2228, 2828 |
| BsuTUI | ATCGAT | 2 cut(s) | 1718, 2821 |
| BtgI | CCRYGG | 3 cut(s) | 1347, 1619, 2648 |
| BtsCI | GGATG | 7 cut(s) | 292, 733, 921, 967, 1282, 2280, 2707 |
| BtsI | GCAGTG | 1 cut(s) | 1946 |
| BtsIMutI | CAGTG | 7 cut(s) | 261, 1218, 1432, 1946, 2127, 2438, 2751 |
| Cac8I | GCNNGC | 4 cut(s) | 124, 1636, 2010, 2759 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2405 |
| CciI | TCATGA | 1 cut(s) | 2035 |
| CfoI | GCGC | 1 cut(s) | 1282 |
| Cfr13I | GGNCC | 4 cut(s) | 1321, 2226, 2227, 2839 |
| ClaI | ATCGAT | 2 cut(s) | 1718, 2821 |
| CseI | GACGC | 1 cut(s) | 797 |
| CsiI | ACCWGGT | 1 cut(s) | 1437 |
| Csp6I | GTAC | 3 cut(s) | 867, 1262, 2159 |
| CviQI | GTAC | 3 cut(s) | 867, 1262, 2159 |
| DdeI | CTNAG | 6 cut(s) | 273, 1033, 1185, 1509, 2286, 2355 |
| DraIII | CACNNNGTG | 1 cut(s) | 2171 |
| EaeI | YGGCCR | 2 cut(s) | 84, 2826 |
| EagI | CGGCCG | 1 cut(s) | 84 |
| Eam1104I | CTCTTC | 3 cut(s) | 969, 1184, 2465 |
| EarI | CTCTTC | 3 cut(s) | 969, 1184, 2465 |
| Ecl136II | GAGCTC | 2 cut(s) | 114, 2290 |
| EclXI | CGGCCG | 1 cut(s) | 84 |
| Eco105I | TACGTA | 1 cut(s) | 1413 |
| Eco130I | CCWWGG | 6 cut(s) | 538, 1151, 1619, 1915, 2230, 2648 |
| Eco147I | AGGCCT | 1 cut(s) | 983 |
| Eco24I | GRGCYC | 4 cut(s) | 116, 124, 2230, 2292 |
| Eco31I | GGTCTC | 1 cut(s) | 262 |
| Eco47I | GGWCC | 2 cut(s) | 1321, 2839 |
| Eco52I | CGGCCG | 1 cut(s) | 84 |
| Eco53kI | GAGCTC | 2 cut(s) | 114, 2290 |
| Eco57I | CTGAAG | 6 cut(s) | 780, 1833, 2378, 2530, 2619, 2753 |
| EcoICRI | GAGCTC | 2 cut(s) | 114, 2290 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2227, 2839 |
| EcoRI | GAATTC | 2 cut(s) | 517, 1086 |
| EcoRII | CCWGG | 2 cut(s) | 1437, 2319 |
| EcoT14I | CCWWGG | 6 cut(s) | 538, 1151, 1619, 1915, 2230, 2648 |
| EcoT38I | GRGCYC | 4 cut(s) | 116, 124, 2230, 2292 |
| ErhI | CCWWGG | 6 cut(s) | 538, 1151, 1619, 1915, 2230, 2648 |
| Esp3I | CGTCTC | 1 cut(s) | 774 |
| FaqI | GGGAC | 4 cut(s) | 20, 1119, 2112, 2789 |
| FauNDI | CATATG | 2 cut(s) | 2132, 2149 |
| FbaI | TGATCA | 1 cut(s) | 138 |
| FblI | GTMKAC | 2 cut(s) | 764, 2701 |
| Fnu4HI | GCNGC | 6 cut(s) | 630, 828, 1506, 2622, 2664, 2783 |
| FokI | GGATG | 7 cut(s) | 299, 740, 928, 954, 1289, 2287, 2694 |
| FriOI | GRGCYC | 4 cut(s) | 116, 124, 2230, 2292 |
| Fsp4HI | GCNGC | 6 cut(s) | 630, 828, 1506, 2622, 2664, 2783 |
| FspBI | CTAG | 5 cut(s) | 354, 1091, 1257, 2013, 2775 |
| GlaI | GCGC | 1 cut(s) | 1281 |
| GluI | GCNGC | 6 cut(s) | 630, 828, 1506, 2622, 2664, 2783 |
| GsaI | CCCAGC | 1 cut(s) | 979 |
| HaeIII | GGCC | 7 cut(s) | 56, 86, 889, 983, 1714, 2228, 2828 |
| HapII | CCGG | 3 cut(s) | 117, 200, 308 |
| HgaI | GACGC | 1 cut(s) | 797 |
| HhaI | GCGC | 1 cut(s) | 1282 |
| Hin1I | GRCGYC | 1 cut(s) | 789 |
| Hin6I | GCGC | 1 cut(s) | 1280 |
| HinP1I | GCGC | 1 cut(s) | 1280 |
| HincII | GTYRAC | 2 cut(s) | 1444, 1551 |
| HindII | GTYRAC | 2 cut(s) | 1444, 1551 |
| HpaII | CCGG | 3 cut(s) | 117, 200, 308 |
| HphI | GGTGA | 4 cut(s) | 277, 605, 670, 1685 |
| Hpy166II | GTNNAC | 9 cut(s) | 613, 765, 1024, 1262, 1444, 1551, 2174, 2436, 2702 |
| Hpy8I | GTNNAC | 9 cut(s) | 613, 765, 1024, 1262, 1444, 1551, 2174, 2436, 2702 |
| Hpy99I | CGWCG | 2 cut(s) | 85, 454 |
| HpyCH4III | ACNGT | 9 cut(s) | 94, 242, 762, 1120, 1213, 1427, 2122, 2716, 2746 |
| HpyCH4IV | ACGT | 2 cut(s) | 816, 1412 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 833, 1502, 1514, 1615, 2142, 2556 |
| HpyF3I | CTNAG | 6 cut(s) | 273, 1033, 1185, 1509, 2286, 2355 |
| HpySE526I | ACGT | 2 cut(s) | 816, 1412 |
| Hsp92I | GRCGYC | 1 cut(s) | 789 |
| HspAI | GCGC | 1 cut(s) | 1280 |
| Kpn2I | TCCGGA | 1 cut(s) | 199 |
| Ksp22I | TGATCA | 1 cut(s) | 138 |
| LmnI | GCTCC | 4 cut(s) | 119, 202, 1623, 1766 |
| Lsp1109I | GCAGC | 6 cut(s) | 616, 814, 1492, 2633, 2650, 2794 |
| LweI | GCATC | 7 cut(s) | 567, 823, 1087, 1267, 1825, 2427, 2633 |
| MabI | ACCWGGT | 1 cut(s) | 1437 |
| MaeI | CTAG | 5 cut(s) | 354, 1091, 1257, 2013, 2775 |
| MaeII | ACGT | 2 cut(s) | 816, 1412 |
| MaeIII | GTNAC | 4 cut(s) | 88, 839, 1213, 2606 |
| MfeI | CAATTG | 1 cut(s) | 1128 |
| MflI | RGATCY | 5 cut(s) | 1201, 1484, 2449, 2460, 2644 |
| MhlI | GDGCHC | 5 cut(s) | 116, 124, 1464, 2230, 2292 |
| MluI | ACGCGT | 1 cut(s) | 13 |
| MlyI | GAGTC | 5 cut(s) | 127, 809, 1307, 1978, 2357 |
| MmeI | TCCRAC | 7 cut(s) | 104, 354, 727, 2062, 2092, 2305, 2735 |
| MroI | TCCGGA | 1 cut(s) | 199 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1028, 2388, 2543 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1019, 1902 |
| MspA1I | CMGCKG | 2 cut(s) | 629, 2663 |
| MspCI | CTTAAG | 2 cut(s) | 1565, 2614 |
| MspI | CCGG | 3 cut(s) | 117, 200, 308 |
| MspR9I | CCNGG | 3 cut(s) | 118, 1439, 2321 |
| MunI | CAATTG | 1 cut(s) | 1128 |
| MvaI | CCWGG | 2 cut(s) | 1439, 2321 |
| MvnI | CGCG | 2 cut(s) | 15, 126 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 833, 1502, 1514, 1615, 2142, 2556 |
| NciI | CCSGG | 1 cut(s) | 118 |
| NcoI | CCATGG | 2 cut(s) | 1619, 2648 |
| NdeI | CATATG | 2 cut(s) | 2132, 2149 |
| NlaIV | GGNNCC | 5 cut(s) | 204, 858, 1558, 2228, 2646 |
| NmeAIII | GCCGAG | 1 cut(s) | 2692 |
| NmuCI | GTSAC | 2 cut(s) | 88, 1213 |
| NspI | RCATGY | 5 cut(s) | 1030, 1613, 1638, 2081, 2761 |
| PaeI | GCATGC | 2 cut(s) | 1638, 2761 |
| PagI | TCATGA | 1 cut(s) | 2035 |
| PceI | AGGCCT | 1 cut(s) | 983 |
| PciI | ACATGT | 2 cut(s) | 1026, 2077 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1028, 2388, 2543 |
| PfeI | GAWTC | 7 cut(s) | 196, 662, 1979, 2019, 2039, 2059, 2656 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1876 |
| PkrI | GCNGC | 6 cut(s) | 631, 829, 1507, 2623, 2665, 2784 |
| Ple19I | CGATCG | 1 cut(s) | 2825 |
| PleI | GAGTC | 5 cut(s) | 127, 808, 1306, 1977, 2356 |
| PpsI | GAGTC | 5 cut(s) | 127, 808, 1306, 1977, 2356 |
| Ppu21I | YACGTR | 1 cut(s) | 1413 |
| PpuMI | RGGWCCY | 1 cut(s) | 2839 |
| PscI | ACATGT | 2 cut(s) | 1026, 2077 |
| PshBI | ATTAAT | 2 cut(s) | 1649, 2247 |
| Psp124BI | GAGCTC | 2 cut(s) | 116, 2292 |
| Psp1406I | AACGTT | 1 cut(s) | 816 |
| Psp5II | RGGWCCY | 1 cut(s) | 2839 |
| Psp6I | CCWGG | 2 cut(s) | 1437, 2319 |
| PspFI | CCCAGC | 1 cut(s) | 975 |
| PspGI | CCWGG | 2 cut(s) | 1437, 2319 |
| PspN4I | GGNNCC | 5 cut(s) | 204, 858, 1558, 2228, 2646 |
| PspOMI | GGGCCC | 1 cut(s) | 2226 |
| PspPI | GGNCC | 4 cut(s) | 1321, 2226, 2227, 2839 |
| PspPPI | RGGWCCY | 1 cut(s) | 2839 |
| PstI | CTGCAG | 1 cut(s) | 832 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2405 |
| PsuI | RGATCY | 5 cut(s) | 1201, 1484, 2449, 2460, 2644 |
| PvuI | CGATCG | 1 cut(s) | 2825 |
| PvuII | CAGCTG | 1 cut(s) | 2663 |
| RsaI | GTAC | 3 cut(s) | 868, 1263, 2160 |
| RsaNI | GTAC | 3 cut(s) | 867, 1262, 2159 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1019, 1902 |
| SacI | GAGCTC | 2 cut(s) | 116, 2292 |
| SatI | GCNGC | 6 cut(s) | 630, 828, 1506, 2622, 2664, 2783 |
| Sau96I | GGNCC | 4 cut(s) | 1321, 2226, 2227, 2839 |
| ScaI | AGTACT | 1 cut(s) | 868 |
| SchI | GAGTC | 5 cut(s) | 127, 809, 1307, 1978, 2357 |
| ScrFI | CCNGG | 3 cut(s) | 118, 1439, 2321 |
| SduI | GDGCHC | 5 cut(s) | 116, 124, 1464, 2230, 2292 |
| SexAI | ACCWGGT | 1 cut(s) | 1437 |
| SfaNI | GCATC | 7 cut(s) | 567, 823, 1087, 1267, 1825, 2427, 2633 |
| SfcI | CTRYAG | 2 cut(s) | 828, 1588 |
| SinI | GGWCC | 2 cut(s) | 1321, 2839 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1019, 1902 |
| SmlI | CTYRAG | 5 cut(s) | 872, 1265, 1565, 2203, 2614 |
| SmoI | CTYRAG | 5 cut(s) | 872, 1265, 1565, 2203, 2614 |
| SnaBI | TACGTA | 1 cut(s) | 1413 |
| SpeI | ACTAGT | 1 cut(s) | 353 |
| SphI | GCATGC | 2 cut(s) | 1638, 2761 |
| SseBI | AGGCCT | 1 cut(s) | 983 |
| SsiI | CCGC | 5 cut(s) | 176, 344, 544, 627, 2557 |
| SspMI | CTAG | 5 cut(s) | 354, 1091, 1257, 2013, 2775 |
| SstI | GAGCTC | 2 cut(s) | 116, 2292 |
| StuI | AGGCCT | 1 cut(s) | 983 |
| StyD4I | CCNGG | 3 cut(s) | 116, 1437, 2319 |
| StyI | CCWWGG | 6 cut(s) | 538, 1151, 1619, 1915, 2230, 2648 |
| TaaI | ACNGT | 9 cut(s) | 94, 242, 762, 1120, 1213, 1427, 2122, 2716, 2746 |
| TaiI | ACGT | 2 cut(s) | 819, 1415 |
| TaqI | TCGA | 9 cut(s) | 131, 184, 350, 449, 1464, 1718, 1967, 2139, 2821 |
| TatI | WGTACW | 3 cut(s) | 866, 1261, 2158 |
| TfiI | GAWTC | 7 cut(s) | 196, 662, 1979, 2019, 2039, 2059, 2656 |
| TscAI | CASTG | 7 cut(s) | 261, 1218, 1432, 1946, 2127, 2438, 2751 |
| TseFI | GTSAC | 2 cut(s) | 88, 1213 |
| TseI | GCWGC | 6 cut(s) | 629, 827, 1505, 2621, 2663, 2782 |
| Tsp45I | GTSAC | 2 cut(s) | 88, 1213 |
| TspGWI | ACGGA | 1 cut(s) | 586 |
| TspRI | CASTG | 7 cut(s) | 261, 1218, 1432, 1946, 2127, 2438, 2751 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1876 |
| Vha464I | CTTAAG | 2 cut(s) | 1565, 2614 |
| VpaK11BI | GGWCC | 2 cut(s) | 1321, 2839 |
| VspI | ATTAAT | 2 cut(s) | 1649, 2247 |
| XapI | RAATTY | 9 cut(s) | 75, 161, 277, 412, 517, 563, 923, 1086, 2388 |
| XbaI | TCTAGA | 1 cut(s) | 2774 |
| XceI | RCATGY | 5 cut(s) | 1030, 1613, 1638, 2081, 2761 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1345, 1626 |
| XmiI | GTMKAC | 2 cut(s) | 764, 2701 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1028, 2388, 2543 |
| XspI | CTAG | 5 cut(s) | 354, 1091, 1257, 2013, 2775 |
| ZrmI | AGTACT | 1 cut(s) | 868 |