Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

8127842 .. 8130221

Gene Structure 2380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG038500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGATACAGAACACGTGGCTGATCGGTACAAGGTCCCGTCAGTTATCGGTGAGGCTATCAATTCCGATCATGAAATTCCGACGGCCGTGACGGTTAAGCGGACAAACACGAGCTCCGGGGCTCGCATTTCGATTCTTATCAAGCAAGAGTGCATTGAGGAATTTGATGAAGTTGCGGAAAGTCGAAGGACATTGATTCCGGAGCCGAAGGCCAAGAGGGTAAAGGAGGAAGTTCCTGATTGTGAAGTGGTGTCAGTGCGACAGGTGAGACCTCAAAATTTGGAGGATGGCGATTTCAAGATTGAGCCGGATTGGTTCTTGGTGGGAAGCACATTGGTTACTGCGGTTTCGACTAGTAAAGGCATGAAATTGTTGGACAATGAGATTGTTCATCTCTCTTTTCCTTCCTCAAATTCCAGCTACAAAACCCAATGGATTATTGGTCAGTTTCCAATGGAATGGGCAAAATGTGTTGTTCCTCTTGTGAATTCGGGGAAGGTTAAAGTTCTTGGGCGGTTTAATGGTGCGCCGAAATTCCTATCTATGATCCAAGAGGTCATATTGTCTTTGAGTTTTTATATTCATCATTCAATTTCCGCTGCTGTTGAGTTGTCTTCATGTAAGCGAGAGGATTCGTATCCTTTTCTCACCTTGTTCAAATTACTGAAACTCCAACCATATCAGAAGGAGGGCTTCTTTCATCTATGTGAACATGTTCTCAGGGGAGGCAACAACACACTTACCAACTGCAACACAAAAGCCAAGAGGAGGAATTCTAGCAGATGCAATGGGACTGGGGAAGACTGTGATGACAATTGCTCTAATACTTGCAAGACCAAGGAGAGGAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

284

Amino Acids

31.94

Weight (kDa)

7.99

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	5 cut(s)	100, 176, 344, 514, 597
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	7 cut(s)	75, 161, 277, 412, 487, 533, 772
AcvI	CACGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	2 cut(s)	768, 843
AflIII	ACRYGT	2 cut(s)	13, 712
AgsI	TTSAA	3 cut(s)	298, 591, 658
AhlI	ACTAGT	1 cut(s)	353
AluBI	AGCT	2 cut(s)	114, 420
AluI	AGCT	2 cut(s)	114, 420
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	541
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	2 cut(s)	84, 210
ApeKI	GCWGC	1 cut(s)	599
ApoI	RAATTY	7 cut(s)	75, 161, 277, 412, 487, 533, 772
Asp700I	GAANNNNTTC	1 cut(s)	714
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	3 cut(s)	62, 277, 640
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	116, 124
BauI	CACGAG	1 cut(s)	109
BbrPI	CACGTG	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	606, 807
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	2 cut(s)	71, 99
BciVI	GTATCC	1 cut(s)	648
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	262
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	2 cut(s)	354, 777
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	1 cut(s)	600
BlsI	GCNGC	1 cut(s)	601
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	36, 204
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	804
BmsI	GCATC	1 cut(s)	773
BmuI	ACTGGG	1 cut(s)	804
BpiI	GAAGAC	2 cut(s)	606, 807
BpuMI	CCSGG	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	16
BsaBI	GATNNNNATC	2 cut(s)	137, 636
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	117, 837
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 654, 684
Bsc4I	CCNNNNNNNGG	2 cut(s)	768, 843
Bse1I	ACTGG	1 cut(s)	799
Bse3DI	GCAATG	1 cut(s)	793
Bse8I	GATNNNNATC	2 cut(s)	137, 636
BseAI	TCCGGA	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	117, 837
BseGI	GGATG	1 cut(s)	292
BseJI	GATNNNNATC	2 cut(s)	137, 636
BseLI	CCNNNNNNNGG	2 cut(s)	768, 843
BseMI	GCAATG	1 cut(s)	793
BseMII	CTCAG	1 cut(s)	733
BseNI	ACTGG	1 cut(s)	799
BseRI	GAGGAG	1 cut(s)	781
BseX3I	CGGCCG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	586
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	86, 212
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	117, 200, 308
BslFI	GGGAC	2 cut(s)	20, 805
BslI	CCNNNNNNNGG	2 cut(s)	768, 843
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	2 cut(s)	20, 805
BsnI	GGCC	2 cut(s)	86, 212
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	116, 124
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	22, 67, 546
BspACI	CCGC	5 cut(s)	100, 176, 344, 514, 597
BspANI	GGCC	2 cut(s)	86, 212
BspCNI	CTCAG	1 cut(s)	732
BspEI	TCCGGA	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	36, 204
BspPI	GGATC	1 cut(s)	541
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	793
BsrI	ACTGG	1 cut(s)	799
BssECI	CCNNGG	2 cut(s)	117, 837
BssMI	GATC	3 cut(s)	22, 67, 546
BssSI	CACGAG	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	837
Bst2BI	CACGAG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	94, 806
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	719
BstF5I	GGATG	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	3 cut(s)	25, 70, 549
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	3 cut(s)	22, 67, 546
BstMCI	CGRYCG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	716
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	586
BstV2I	GAAGAC	2 cut(s)	606, 807
BstXI	CCANNNNNNTGG	1 cut(s)	459
BstZI	CGGCCG	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	2 cut(s)	86, 212
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	124
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	4 cut(s)	71, 364, 618, 713
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	719
DpnI	GATC	3 cut(s)	24, 69, 548
DpnII	GATC	3 cut(s)	22, 67, 546
EaeI	YGGCCR	1 cut(s)	84
EagI	CGGCCG	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	114
EclXI	CGGCCG	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	837
Eco24I	GRGCYC	2 cut(s)	116, 124
Eco31I	GGTCTC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	34
Eco52I	CGGCCG	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	114
Eco72I	CACGTG	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRI	GAATTC	2 cut(s)	487, 772
EcoT14I	CCWWGG	1 cut(s)	837
EcoT38I	GRGCYC	2 cut(s)	116, 124
ErhI	CCWWGG	1 cut(s)	837
FaeI	CATG	4 cut(s)	74, 367, 621, 716
FaiI	YATR	9 cut(s)	72, 365, 545, 560, 579, 619, 679, 706, 714
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	2 cut(s)	20, 805
FatI	CATG	4 cut(s)	70, 363, 617, 712
Fnu4HI	GCNGC	1 cut(s)	600
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	2 cut(s)	116, 124
Fsp4HI	GCNGC	1 cut(s)	600
FspBI	CTAG	2 cut(s)	354, 777
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	600
HaeIII	GGCC	2 cut(s)	86, 212
HapII	CCGG	3 cut(s)	117, 200, 308
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	4 cut(s)	74, 367, 621, 716
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HinfI	GANTC	3 cut(s)	133, 196, 632
HpaII	CCGG	3 cut(s)	117, 200, 308
HphI	GGTGA	3 cut(s)	62, 277, 640
Hpy166II	GTNNAC	1 cut(s)	710
Hpy188I	TCNGA	4 cut(s)	67, 81, 684, 854
Hpy188III	TCNNGA	4 cut(s)	71, 200, 236, 298
Hpy8I	GTNNAC	1 cut(s)	710
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	5 cut(s)	180, 202, 414, 490, 679
HpyCH4III	ACNGT	2 cut(s)	94, 806
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	4 cut(s)	153, 750, 786, 831
HpyF3I	CTNAG	1 cut(s)	719
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	74, 367, 621, 716
HspAI	GCGC	1 cut(s)	527
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	22, 67, 546
LmnI	GCTCC	2 cut(s)	119, 202
LpnPI	CCDG	8 cut(s)	130, 213, 248, 249, 321, 430, 706, 780
Lsp1109I	GCAGC	1 cut(s)	586
LweI	GCATC	1 cut(s)	773
MaeI	CTAG	2 cut(s)	354, 777
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	88, 337
MalI	GATC	3 cut(s)	24, 69, 548
MboI	GATC	3 cut(s)	22, 67, 546
MboII	GAAGA	2 cut(s)	606, 812
MfeI	CAATTG	1 cut(s)	814
MhlI	GDGCHC	2 cut(s)	116, 124
MmeI	TCCRAC	3 cut(s)	104, 354, 697
MroI	TCCGGA	1 cut(s)	199
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	3 cut(s)	96, 501, 519
MslI	CAYNNNNRTG	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	3 cut(s)	117, 200, 308
MspR9I	CCNGG	1 cut(s)	118
MunI	CAATTG	1 cut(s)	814
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	3 cut(s)	22, 67, 546
NlaIII	CATG	4 cut(s)	74, 367, 621, 716
NlaIV	GGNNCC	2 cut(s)	36, 204
NmuCI	GTSAC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	716
PagI	TCATGA	1 cut(s)	70
PciI	ACATGT	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	3 cut(s)	133, 196, 632
PkrI	GCNGC	1 cut(s)	601
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	34
PscI	ACATGT	1 cut(s)	712
Psp124BI	GAGCTC	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	34
PspCI	CACGTG	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	36, 204
PspPI	GGNCC	1 cut(s)	34
PspPPI	RGGWCCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	705
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	96, 501, 519
SatI	GCNGC	1 cut(s)	600
Sau3AI	GATC	3 cut(s)	22, 67, 546
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	116, 124
SetI	ASST	9 cut(s)	18, 36, 116, 267, 274, 422, 501, 558, 653
SfaNI	GCATC	1 cut(s)	773
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	705
SpeI	ACTAGT	1 cut(s)	353
SsiI	CCGC	5 cut(s)	100, 176, 344, 514, 597
SspMI	CTAG	2 cut(s)	354, 777
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	837
TaaI	ACNGT	2 cut(s)	94, 806
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	131, 184, 350
TfiI	GAWTC	3 cut(s)	133, 196, 632
Tru1I	TTAA	3 cut(s)	96, 501, 519
Tru9I	TTAA	3 cut(s)	96, 501, 519
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	599
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	7 cut(s)	87, 183, 380, 380, 572, 606, 689
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	7 cut(s)	75, 161, 277, 412, 487, 533, 772
XceI	RCATGY	1 cut(s)	716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	2 cut(s)	354, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.