SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HIRAN | PF08797 | 154 - 246 | 4e-12 | HIRAN domain |
| SNF2-rel_dom | PF00176 | 295 - 521 | 3e-37 | SNF2-related domain |
| zf-C3HC4_2 | PF13923 | 576 - 603 | 8.1e-07 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_UBOX | PF13445 | 577 - 608 | 1.2e-07 | RING-type zinc-finger |
| zf-C3HC4 | PF00097 | 577 - 606 | 3.8e-06 | Zinc finger, C3HC4 type (RING finger) |
| Helicase_C | PF00271 | 658 - 768 | 1.6e-13 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1480, 1838 |
| AccI | GTMKAC | 1 cut(s) | 2305 |
| AciI | CCGC | 4 cut(s) | 482, 682, 881, 2158 |
| AclI | AACGTT | 1 cut(s) | 53 |
| AclWI | GGATC | 7 cut(s) | 244, 1096, 1274, 1751, 2058, 2243, 2256 |
| AcoI | YGGCCR | 1 cut(s) | 1829 |
| AcsI | RAATTY | 4 cut(s) | 415, 550, 655, 1989 |
| AcuI | CTGAAG | 5 cut(s) | 1437, 1979, 2131, 2220, 2357 |
| AcyI | GRCGYC | 2 cut(s) | 234, 1262 |
| AdeI | CACNNNGTG | 2 cut(s) | 1728, 1775 |
| AfaI | GTAC | 2 cut(s) | 1015, 1764 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1480, 1838 |
| AflII | CTTAAG | 1 cut(s) | 1169 |
| AflIII | ACRYGT | 3 cut(s) | 400, 777, 1681 |
| AgsI | TTSAA | 8 cut(s) | 436, 759, 847, 1095, 1220, 1394, 1631, 1965 |
| AhlI | ACTAGT | 1 cut(s) | 491 |
| AjnI | CCWGG | 2 cut(s) | 1041, 1920 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 561, 593 |
| AluBI | AGCT | 8 cut(s) | 78, 166, 558, 793, 1076, 1421, 1969, 2371 |
| AluI | AGCT | 8 cut(s) | 78, 166, 558, 793, 1076, 1421, 1969, 2371 |
| Alw21I | GWGCWC | 2 cut(s) | 1068, 1114 |
| Alw26I | GTCTC | 3 cut(s) | 1813, 2068, 2117 |
| AlwI | GGATC | 7 cut(s) | 244, 1096, 1274, 1751, 2058, 2243, 2256 |
| Ama87I | CYCGRG | 1 cut(s) | 59 |
| AoxI | GGCC | 5 cut(s) | 174, 326, 1316, 1829, 2430 |
| ApeKI | GCWGC | 2 cut(s) | 2225, 2386 |
| ApoI | RAATTY | 4 cut(s) | 415, 550, 655, 1989 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 692, 724, 2029, 2061 |
| AseI | ATTAAT | 2 cut(s) | 1253, 1322 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 54, 183, 1635, 1989 |
| AspLEI | GCGC | 2 cut(s) | 697, 1230 |
| AspS9I | GGNCC | 4 cut(s) | 326, 2003, 2430, 2443 |
| AsuC2I | CCSGG | 1 cut(s) | 243 |
| AsuHPI | GGTGA | 4 cut(s) | 370, 829, 967, 1289 |
| AvaI | CYCGRG | 1 cut(s) | 59 |
| AvaII | GGWCC | 2 cut(s) | 2003, 2443 |
| BalI | TGGCCA | 1 cut(s) | 1831 |
| BamHI | GGATCC | 1 cut(s) | 2248 |
| BauI | CACGAG | 1 cut(s) | 188 |
| BbsI | GAAGAC | 4 cut(s) | 39, 774, 1191, 1944 |
| Bbv12I | GWGCWC | 2 cut(s) | 1068, 1114 |
| BbvI | GCAGC | 2 cut(s) | 2237, 2398 |
| BccI | CCATC | 8 cut(s) | 135, 419, 950, 1140, 1352, 1821, 1870, 2421 |
| BceAI | ACGGC | 1 cut(s) | 2252 |
| BciT130I | CCWGG | 2 cut(s) | 1043, 1922 |
| BclI | TGATCA | 1 cut(s) | 9 |
| BcnI | CCSGG | 1 cut(s) | 243 |
| BcoDI | GTCTC | 3 cut(s) | 1813, 2068, 2117 |
| BcuI | ACTAGT | 1 cut(s) | 491 |
| BfaI | CTAG | 3 cut(s) | 492, 794, 2379 |
| BfmI | CTRYAG | 1 cut(s) | 1192 |
| BfrI | CTTAAG | 1 cut(s) | 1169 |
| BisI | GCNGC | 2 cut(s) | 2226, 2387 |
| BlsI | GCNGC | 2 cut(s) | 2227, 2388 |
| Bme1390I | CCNGG | 3 cut(s) | 243, 1043, 1922 |
| Bme18I | GGWCC | 2 cut(s) | 2003, 2443 |
| BmeT110I | CYCGRG | 1 cut(s) | 59 |
| BmgT120I | GGNCC | 4 cut(s) | 326, 2003, 2430, 2443 |
| BmiI | GGNNCC | 2 cut(s) | 1162, 2250 |
| BmrFI | CCNGG | 3 cut(s) | 243, 1043, 1922 |
| BmrI | ACTGGG | 1 cut(s) | 1243 |
| BmsI | GCATC | 4 cut(s) | 705, 2028, 2092, 2237 |
| BmuI | ACTGGG | 1 cut(s) | 1243 |
| BpiI | GAAGAC | 4 cut(s) | 39, 774, 1191, 1944 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1113 |
| BpuEI | CTTGAG | 1 cut(s) | 1792 |
| BpuMI | CCSGG | 1 cut(s) | 243 |
| Bsa29I | ATCGAT | 2 cut(s) | 1707, 2425 |
| BsaAI | YACGTR | 1 cut(s) | 1017 |
| BsaBI | GATNNNNATC | 3 cut(s) | 275, 1707, 2106 |
| BsaHI | GRCGYC | 2 cut(s) | 234, 1262 |
| BsaI | GGTCTC | 1 cut(s) | 2068 |
| BsaJI | CCNNGG | 5 cut(s) | 329, 951, 1223, 1519, 2252 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1680, 1710 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1480, 1838 |
| Bse1I | ACTGG | 4 cut(s) | 1055, 1238, 1474, 1946 |
| Bse3DI | GCAATG | 1 cut(s) | 1138 |
| Bse8I | GATNNNNATC | 3 cut(s) | 275, 1707, 2106 |
| BseBI | CCWGG | 2 cut(s) | 1043, 1922 |
| BseCI | ATCGAT | 2 cut(s) | 1707, 2425 |
| BseDI | CCNNGG | 5 cut(s) | 329, 951, 1223, 1519, 2252 |
| BseGI | GGATG | 6 cut(s) | 46, 430, 939, 1881, 2125, 2311 |
| BseJI | GATNNNNATC | 3 cut(s) | 275, 1707, 2106 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1480, 1838 |
| BseMI | GCAATG | 1 cut(s) | 1138 |
| BseMII | CTCAG | 3 cut(s) | 336, 425, 1127 |
| BseNI | ACTGG | 4 cut(s) | 1055, 1238, 1474, 1946 |
| BseRI | GAGGAG | 3 cut(s) | 161, 176, 2288 |
| BseXI | GCAGC | 2 cut(s) | 2237, 2398 |
| BsgI | GTGCAG | 2 cut(s) | 1810, 2244 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1711 |
| BshFI | GGCC | 5 cut(s) | 176, 328, 1318, 1831, 2432 |
| BshVI | ATCGAT | 2 cut(s) | 1707, 2425 |
| BsiEI | CGRYCG | 1 cut(s) | 1711 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1068, 1114 |
| BsiHKCI | CYCGRG | 1 cut(s) | 59 |
| BsiSI | CCGG | 2 cut(s) | 242, 446 |
| BslFI | GGGAC | 1 cut(s) | 1716 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1480, 1838 |
| BsmAI | GTCTC | 3 cut(s) | 1813, 2068, 2117 |
| BsmBI | CGTCTC | 1 cut(s) | 2117 |
| BsmFI | GGGAC | 1 cut(s) | 1716 |
| BsnI | GGCC | 5 cut(s) | 176, 328, 1318, 1831, 2432 |
| Bso31I | GGTCTC | 1 cut(s) | 2068 |
| BsoBI | CYCGRG | 1 cut(s) | 59 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1068, 1114 |
| Bsp19I | CCATGG | 2 cut(s) | 1223, 2252 |
| BspACI | CCGC | 4 cut(s) | 482, 682, 881, 2158 |
| BspANI | GGCC | 5 cut(s) | 176, 328, 1318, 1831, 2432 |
| BspCNI | CTCAG | 3 cut(s) | 337, 424, 1126 |
| BspDI | ATCGAT | 2 cut(s) | 1707, 2425 |
| BspHI | TCATGA | 3 cut(s) | 1639, 2008, 2212 |
| BspLI | GGNNCC | 2 cut(s) | 1162, 2250 |
| BspPI | GGATC | 7 cut(s) | 244, 1096, 1274, 1751, 2058, 2243, 2256 |
| BspTI | CTTAAG | 1 cut(s) | 1169 |
| BspTNI | GGTCTC | 1 cut(s) | 2068 |
| BsrDI | GCAATG | 1 cut(s) | 1138 |
| BsrI | ACTGG | 4 cut(s) | 1055, 1238, 1474, 1946 |
| BssECI | CCNNGG | 5 cut(s) | 329, 951, 1223, 1519, 2252 |
| BssNI | GRCGYC | 2 cut(s) | 234, 1262 |
| BssSI | CACGAG | 1 cut(s) | 188 |
| BssT1I | CCWWGG | 3 cut(s) | 1223, 1519, 2252 |
| Bst2BI | CACGAG | 1 cut(s) | 188 |
| Bst2UI | CCWGG | 2 cut(s) | 1043, 1922 |
| Bst4CI | ACNGT | 7 cut(s) | 26, 184, 380, 1031, 1916, 2320, 2350 |
| Bst6I | CTCTTC | 3 cut(s) | 138, 837, 2066 |
| BstACI | GRCGYC | 2 cut(s) | 234, 1262 |
| BstAFI | CTTAAG | 1 cut(s) | 1169 |
| BstBAI | YACGTR | 1 cut(s) | 1017 |
| BstC8I | GCNNGC | 3 cut(s) | 1240, 1614, 2363 |
| BstDEI | CTNAG | 8 cut(s) | 66, 345, 351, 411, 1113, 1201, 1956, 2093 |
| BstDSI | CCRYGG | 3 cut(s) | 951, 1223, 2252 |
| BstF5I | GGATG | 6 cut(s) | 46, 430, 939, 1881, 2125, 2311 |
| BstHHI | GCGC | 2 cut(s) | 697, 1230 |
| BstMAI | GTCTC | 3 cut(s) | 1813, 2068, 2117 |
| BstMCI | CGRYCG | 1 cut(s) | 1711 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 84, 1118, 1746, 2157 |
| BstNI | CCWGG | 2 cut(s) | 1043, 1922 |
| BstNSI | RCATGY | 7 cut(s) | 404, 781, 1217, 1242, 1517, 1685, 2365 |
| BstSCI | CCNGG | 3 cut(s) | 241, 1041, 1920 |
| BstSFI | CTRYAG | 1 cut(s) | 1192 |
| BstSNI | TACGTA | 1 cut(s) | 1017 |
| BstV1I | GCAGC | 2 cut(s) | 2237, 2398 |
| BstV2I | GAAGAC | 4 cut(s) | 39, 774, 1191, 1944 |
| BstX2I | RGATCY | 3 cut(s) | 1088, 2050, 2248 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 627, 1741 |
| BstYI | RGATCY | 3 cut(s) | 1088, 2050, 2248 |
| Bsu15I | ATCGAT | 2 cut(s) | 1707, 2425 |
| BsuRI | GGCC | 5 cut(s) | 176, 328, 1318, 1831, 2432 |
| BsuTUI | ATCGAT | 2 cut(s) | 1707, 2425 |
| BtgI | CCRYGG | 3 cut(s) | 951, 1223, 2252 |
| BtsCI | GGATG | 6 cut(s) | 46, 430, 939, 1881, 2125, 2311 |
| BtsI | GCAGTG | 3 cut(s) | 94, 765, 1550 |
| BtsIMutI | CAGTG | 6 cut(s) | 94, 765, 1036, 1550, 2039, 2355 |
| Cac8I | GCNNGC | 3 cut(s) | 1240, 1614, 2363 |
| CciI | TCATGA | 3 cut(s) | 1639, 2008, 2212 |
| CfoI | GCGC | 2 cut(s) | 697, 1230 |
| Cfr13I | GGNCC | 4 cut(s) | 326, 2003, 2430, 2443 |
| ClaI | ATCGAT | 2 cut(s) | 1707, 2425 |
| CseI | GACGC | 2 cut(s) | 242, 1270 |
| CsiI | ACCWGGT | 1 cut(s) | 1041 |
| Csp6I | GTAC | 2 cut(s) | 1014, 1763 |
| CviQI | GTAC | 2 cut(s) | 1014, 1763 |
| DdeI | CTNAG | 8 cut(s) | 66, 345, 351, 411, 1113, 1201, 1956, 2093 |
| DraIII | CACNNNGTG | 2 cut(s) | 1728, 1775 |
| EaeI | YGGCCR | 1 cut(s) | 1829 |
| Eam1104I | CTCTTC | 3 cut(s) | 138, 837, 2066 |
| EarI | CTCTTC | 3 cut(s) | 138, 837, 2066 |
| Eco105I | TACGTA | 1 cut(s) | 1017 |
| Eco130I | CCWWGG | 3 cut(s) | 1223, 1519, 2252 |
| Eco31I | GGTCTC | 1 cut(s) | 2068 |
| Eco32I | GATATC | 1 cut(s) | 1705 |
| Eco47I | GGWCC | 2 cut(s) | 2003, 2443 |
| Eco57I | CTGAAG | 5 cut(s) | 1437, 1979, 2131, 2220, 2357 |
| Eco88I | CYCGRG | 1 cut(s) | 59 |
| EcoO109I | RGGNCCY | 3 cut(s) | 326, 2003, 2443 |
| EcoRI | GAATTC | 1 cut(s) | 655 |
| EcoRII | CCWGG | 2 cut(s) | 1041, 1920 |
| EcoRV | GATATC | 1 cut(s) | 1705 |
| EcoT14I | CCWWGG | 3 cut(s) | 1223, 1519, 2252 |
| ErhI | CCWWGG | 3 cut(s) | 1223, 1519, 2252 |
| Esp3I | CGTCTC | 1 cut(s) | 2117 |
| FaqI | GGGAC | 1 cut(s) | 1716 |
| FauNDI | CATATG | 2 cut(s) | 1736, 1753 |
| FbaI | TGATCA | 1 cut(s) | 9 |
| FblI | GTMKAC | 1 cut(s) | 2305 |
| Fnu4HI | GCNGC | 2 cut(s) | 2226, 2387 |
| FokI | GGATG | 6 cut(s) | 53, 437, 946, 1888, 2132, 2298 |
| Fsp4HI | GCNGC | 2 cut(s) | 2226, 2387 |
| FspBI | CTAG | 3 cut(s) | 492, 794, 2379 |
| GlaI | GCGC | 2 cut(s) | 696, 1229 |
| GluI | GCNGC | 2 cut(s) | 2226, 2387 |
| HaeIII | GGCC | 5 cut(s) | 176, 328, 1318, 1831, 2432 |
| HapII | CCGG | 2 cut(s) | 242, 446 |
| HgaI | GACGC | 2 cut(s) | 242, 1270 |
| HhaI | GCGC | 2 cut(s) | 697, 1230 |
| Hin1I | GRCGYC | 2 cut(s) | 234, 1262 |
| Hin6I | GCGC | 2 cut(s) | 695, 1228 |
| HinP1I | GCGC | 2 cut(s) | 695, 1228 |
| HincII | GTYRAC | 2 cut(s) | 775, 1048 |
| HindII | GTYRAC | 2 cut(s) | 775, 1048 |
| HpaII | CCGG | 2 cut(s) | 242, 446 |
| HphI | GGTGA | 4 cut(s) | 370, 829, 967, 1289 |
| Hpy166II | GTNNAC | 6 cut(s) | 187, 775, 1048, 1778, 2037, 2306 |
| Hpy8I | GTNNAC | 6 cut(s) | 187, 775, 1048, 1778, 2037, 2306 |
| Hpy99I | CGWCG | 3 cut(s) | 236, 592, 2273 |
| HpyAV | CCTTC | 6 cut(s) | 358, 552, 868, 1100, 1646, 1939 |
| HpyCH4III | ACNGT | 7 cut(s) | 26, 184, 380, 1031, 1916, 2320, 2350 |
| HpyCH4IV | ACGT | 2 cut(s) | 53, 1016 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 84, 1118, 1746, 2157 |
| HpyF3I | CTNAG | 8 cut(s) | 66, 345, 351, 411, 1113, 1201, 1956, 2093 |
| HpySE526I | ACGT | 2 cut(s) | 53, 1016 |
| Hsp92I | GRCGYC | 2 cut(s) | 234, 1262 |
| HspAI | GCGC | 2 cut(s) | 695, 1228 |
| Ksp22I | TGATCA | 1 cut(s) | 9 |
| LmnI | GCTCC | 2 cut(s) | 163, 649 |
| Lsp1109I | GCAGC | 2 cut(s) | 2237, 2398 |
| LweI | GCATC | 4 cut(s) | 705, 2028, 2092, 2237 |
| MabI | ACCWGGT | 1 cut(s) | 1041 |
| MaeI | CTAG | 3 cut(s) | 492, 794, 2379 |
| MaeII | ACGT | 2 cut(s) | 53, 1016 |
| MaeIII | GTNAC | 1 cut(s) | 475 |
| MflI | RGATCY | 3 cut(s) | 1088, 2050, 2248 |
| MhlI | GDGCHC | 2 cut(s) | 1068, 1114 |
| MlsI | TGGCCA | 1 cut(s) | 1831 |
| MluNI | TGGCCA | 1 cut(s) | 1831 |
| MlyI | GAGTC | 6 cut(s) | 29, 200, 908, 1582, 1938, 1958 |
| MmeI | TCCRAC | 6 cut(s) | 492, 886, 1666, 1847, 1906, 2339 |
| Mox20I | TGGCCA | 1 cut(s) | 1831 |
| MroXI | GAANNNNTTC | 4 cut(s) | 54, 183, 1635, 1989 |
| MscI | TGGCCA | 1 cut(s) | 1831 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1506 |
| Msp20I | TGGCCA | 1 cut(s) | 1831 |
| MspCI | CTTAAG | 1 cut(s) | 1169 |
| MspI | CCGG | 2 cut(s) | 242, 446 |
| MspR9I | CCNGG | 3 cut(s) | 243, 1043, 1922 |
| MvaI | CCWGG | 2 cut(s) | 1043, 1922 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 84, 1118, 1746, 2157 |
| NciI | CCSGG | 1 cut(s) | 243 |
| NcoI | CCATGG | 2 cut(s) | 1223, 2252 |
| NdeI | CATATG | 2 cut(s) | 1736, 1753 |
| NlaIV | GGNNCC | 2 cut(s) | 1162, 2250 |
| NspI | RCATGY | 7 cut(s) | 404, 781, 1217, 1242, 1517, 1685, 2365 |
| PaeI | GCATGC | 2 cut(s) | 1242, 2365 |
| PagI | TCATGA | 3 cut(s) | 1639, 2008, 2212 |
| PciI | ACATGT | 3 cut(s) | 400, 777, 1681 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 297 |
| PdmI | GAANNNNTTC | 4 cut(s) | 54, 183, 1635, 1989 |
| PfeI | GAWTC | 9 cut(s) | 207, 318, 800, 1583, 1623, 1631, 1643, 1663, 2260 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1480, 1838 |
| PkrI | GCNGC | 2 cut(s) | 2227, 2388 |
| Ple19I | CGATCG | 1 cut(s) | 1711 |
| PleI | GAGTC | 6 cut(s) | 29, 199, 907, 1581, 1937, 1957 |
| PpsI | GAGTC | 6 cut(s) | 29, 199, 907, 1581, 1937, 1957 |
| Ppu21I | YACGTR | 1 cut(s) | 1017 |
| PpuMI | RGGWCCY | 2 cut(s) | 2003, 2443 |
| PscI | ACATGT | 3 cut(s) | 400, 777, 1681 |
| PshBI | ATTAAT | 2 cut(s) | 1253, 1322 |
| Psp1406I | AACGTT | 1 cut(s) | 53 |
| Psp5II | RGGWCCY | 2 cut(s) | 2003, 2443 |
| Psp6I | CCWGG | 2 cut(s) | 1041, 1920 |
| PspGI | CCWGG | 2 cut(s) | 1041, 1920 |
| PspN4I | GGNNCC | 2 cut(s) | 1162, 2250 |
| PspPI | GGNCC | 4 cut(s) | 326, 2003, 2430, 2443 |
| PspPPI | RGGWCCY | 2 cut(s) | 2003, 2443 |
| PsuI | RGATCY | 3 cut(s) | 1088, 2050, 2248 |
| PvuI | CGATCG | 1 cut(s) | 1711 |
| RsaI | GTAC | 2 cut(s) | 1015, 1764 |
| RsaNI | GTAC | 2 cut(s) | 1014, 1763 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1506 |
| SatI | GCNGC | 2 cut(s) | 2226, 2387 |
| Sau96I | GGNCC | 4 cut(s) | 326, 2003, 2430, 2443 |
| SchI | GAGTC | 6 cut(s) | 29, 200, 908, 1582, 1938, 1958 |
| ScrFI | CCNGG | 3 cut(s) | 243, 1043, 1922 |
| SduI | GDGCHC | 2 cut(s) | 1068, 1114 |
| SexAI | ACCWGGT | 1 cut(s) | 1041 |
| SfaNI | GCATC | 4 cut(s) | 705, 2028, 2092, 2237 |
| SfcI | CTRYAG | 1 cut(s) | 1192 |
| SinI | GGWCC | 2 cut(s) | 2003, 2443 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1506 |
| SmlI | CTYRAG | 2 cut(s) | 1169, 1807 |
| SmoI | CTYRAG | 2 cut(s) | 1169, 1807 |
| SnaBI | TACGTA | 1 cut(s) | 1017 |
| SpeI | ACTAGT | 1 cut(s) | 491 |
| SphI | GCATGC | 2 cut(s) | 1242, 2365 |
| SsiI | CCGC | 4 cut(s) | 482, 682, 881, 2158 |
| SspI | AATATT | 1 cut(s) | 2083 |
| SspMI | CTAG | 3 cut(s) | 492, 794, 2379 |
| StyD4I | CCNGG | 3 cut(s) | 241, 1041, 1920 |
| StyI | CCWWGG | 3 cut(s) | 1223, 1519, 2252 |
| TaaI | ACNGT | 7 cut(s) | 26, 184, 380, 1031, 1916, 2320, 2350 |
| TaiI | ACGT | 2 cut(s) | 56, 1019 |
| TatI | WGTACW | 1 cut(s) | 1762 |
| TfiI | GAWTC | 9 cut(s) | 207, 318, 800, 1583, 1623, 1631, 1643, 1663, 2260 |
| TscAI | CASTG | 6 cut(s) | 94, 772, 1036, 1550, 2039, 2355 |
| TseI | GCWGC | 2 cut(s) | 2225, 2386 |
| TspRI | CASTG | 6 cut(s) | 94, 772, 1036, 1550, 2039, 2355 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1480, 1838 |
| Vha464I | CTTAAG | 1 cut(s) | 1169 |
| VpaK11BI | GGWCC | 2 cut(s) | 2003, 2443 |
| VspI | ATTAAT | 2 cut(s) | 1253, 1322 |
| XapI | RAATTY | 4 cut(s) | 415, 550, 655, 1989 |
| XbaI | TCTAGA | 1 cut(s) | 2378 |
| XceI | RCATGY | 7 cut(s) | 404, 781, 1217, 1242, 1517, 1685, 2365 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 949, 1230 |
| XmiI | GTMKAC | 1 cut(s) | 2305 |
| XmnI | GAANNNNTTC | 4 cut(s) | 54, 183, 1635, 1989 |
| XspI | CTAG | 3 cut(s) | 492, 794, 2379 |