Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021280.1

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 477

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021280.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 379 bp

tgactgtgaagtgatttcggttaagcaagtgaggccaccgaatttggaggatggggacttccctacagagagggattggctcgctgtgggagggacagtagttactgcactttcgacttccaaaggcaggaaattggtagacaatgagattgttaacctctcttttccttctgtaaattccagcaacaaaaccaggtggattgttcgtttctcaaccaaacgatctggagagatcggtcgcttttcaatggaatgggcaaaatgtgttgttccacttgtacaatctggaaaggttaaggttcgtggacggtgtatagctgcaccccaagcgctttctatgatgcaagagatcatgttgtatatgaggtataggtcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

125

Amino Acids

14.04

Weight (kDa)

9.72

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	41, 176
AfaI	GTAC	1 cut(s)	280
AfeI	AGCGCT	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Aor51HI	AGCGCT	1 cut(s)	331
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	318
ApoI	RAATTY	2 cut(s)	41, 176
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	194
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	333
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	305
BsgI	GTGCAG	2 cut(s)	91, 304
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	239
BslFI	GGGAC	2 cut(s)	69, 107
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	2 cut(s)	69, 107
BsnI	GGCC	1 cut(s)	35
Bsp1407I	TGTACA	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	222, 232, 349
BspANI	GGCC	1 cut(s)	35
BsrGI	TGTACA	1 cut(s)	278
BssMI	GATC	3 cut(s)	222, 232, 349
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	3 cut(s)	6, 98, 310
BstAUI	TGTACA	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	3 cut(s)	225, 235, 352
BstMBI	GATC	3 cut(s)	222, 232, 349
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 327
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	373
CsiI	ACCWGGT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	279
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	3 cut(s)	35, 80, 318
CviKI_1	RGCY	3 cut(s)	35, 80, 318
CviQI	GTAC	1 cut(s)	279
DpnI	GATC	3 cut(s)	224, 234, 351
DpnII	GATC	3 cut(s)	222, 232, 349
Eco47I	GGWCC	1 cut(s)	373
Eco47III	AGCGCT	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	356
FaiI	YATR	6 cut(s)	315, 339, 354, 361, 363, 370
FaqI	GGGAC	2 cut(s)	69, 107
FatI	CATG	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	319
GsuI	CTGGAG	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HpaI	GTTAAC	1 cut(s)	155
Hpy166II	GTNNAC	3 cut(s)	140, 155, 306
Hpy188III	TCNNGA	2 cut(s)	226, 286
Hpy8I	GTNNAC	3 cut(s)	140, 155, 306
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	3 cut(s)	6, 98, 310
HpyCH4V	TGCA	3 cut(s)	108, 321, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 327
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	1 cut(s)	330
KspAI	GTTAAC	1 cut(s)	155
Kzo9I	GATC	3 cut(s)	222, 232, 349
LpnPI	CCDG	6 cut(s)	113, 179, 194, 206, 211, 271
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	1 cut(s)	331
MabI	ACCWGGT	1 cut(s)	192
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	224, 234, 351
MboI	GATC	3 cut(s)	222, 232, 349
MluCI	AATT	3 cut(s)	41, 132, 176
MnlI	CCTC	6 cut(s)	25, 41, 64, 84, 168, 358
MseI	TTAA	3 cut(s)	22, 154, 295
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	32, 327
NdeII	GATC	3 cut(s)	222, 232, 349
NlaIII	CATG	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	320
PpuMI	RGGWCCY	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	373
PspPPI	RGGWCCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	3 cut(s)	22, 154, 295
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	3 cut(s)	222, 232, 349
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	7 cut(s)	160, 198, 295, 301, 320, 369, 375
SexAI	ACCWGGT	1 cut(s)	192
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	373
Sse9I	AATT	3 cut(s)	41, 132, 176
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	6, 98, 310
TaqI	TCGA	1 cut(s)	114
TaqII	GACCGA	1 cut(s)	225
TasI	AATT	3 cut(s)	41, 132, 176
TatI	WGTACW	1 cut(s)	278
Tru1I	TTAA	3 cut(s)	22, 154, 295
Tru9I	TTAA	3 cut(s)	22, 154, 295
TseI	GCWGC	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	2 cut(s)	41, 176
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.