FvH4_4g03132

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
2800808 .. 2805726
4919 bp
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UTR
Exon/CDS
Intron
FvH4_4g03132.t1

Sequence Viewer

Length: 1686 bp
ATGGACACAGACCACGCGGCTGATCGGCACAAGCTCCCATCAGTTACCGGCGAGCCGTCGATTCCGATCATGAAATTCCGACGGCCTTCCGAAAAGTGGAAGCACTTTGATCAAACAGGTTGTGTGCAATTCGAATCAGGTCAAGGACCAGATCTCTGTGGGTCAGATGAGGCAGAAACGAAGCCGAAGATCACGGTGAAGAAGGAAGTTGATGATGATCAAGAGAATGTCGAGAAAATCCGGTCAGTTCTGGGGTCTGAAGCCAAGAGGGTAAAGGTGAAGAAGGAAGTTCCTGATTGTGAAGTGGTCTCAGTGAAGCATGTGAGGCTTCCGAATTTGGAGGATGGGGAGTTTGATATTGAGCCGGATTGGTTTAATGTGGGAAGCACATTTGTTACTGCGGTTTCGACTAGTAAAGGAATGAAACTGTTAGACCATGAGATTGTTCATATCTCTTTTCCTACCTTAAATTCCAGCTACGAAACTCAATGGATTGTTCGTTTCTCGACGAAAAGATCAGGAGAGATTGGTCGGTTTCCAATGGAATGGGCAAAAAGTGTTGTTCCTCTTGTGGATTCTGGTAAGGTTAAAGTCTTTGGGCGGTTTTTGGGTGCGCCGAAATTTCTATCTATGATGCAAGATATTGTGTTGTCTGTGAGTTTTTATATTCATCCTTCTATTTTCACTGCTGTCGACATGTCTTCATGGAAGCGAGAGGATTCTAATCCTTTTCGCACCTTATTCAAATTGCTGAAACTCCAGCCATGTCAGAAGTGTGATGTGGATGAAGCTGTCAAACAAAAAGAGGGTTGCCAACAGTATACATCAGAAAAAAGAGACGAAGAAGCCATTTCAGAGTCTTCTTTAAATAACATTGCTGGTGCTGCAGATGCTTGCAACTTGAAGAAACAAGCTCTCCATTGGATGTCAGAATTGGAGAAGAGGATTGATATCGAGAAGTCAGCACCAACTCTTCATCCTTGCTGGGAGGCCTACCGTATATATGATGAGAGGGTTTCTTTCATCTATTTGAACATGTTCTCAGGAGAGGCAACCACACACTTACCACCTGCAACAGAATTACCAAGAGGAGGAATTTTAGCAGATGCAATGGGACTGGGGAAGACTGTGATGACAATTGCTCTTACTTGCAAGACCGAGGAGAGGAAGCTCCGATGGTATTGGAATAACAAAGAAGAGAAAGATAGATCCAAATACAATGACAACATCAAAGCCAAAGGGAGGCACTCTTGTTTGGAAGCTGAAGAACGTTTCAAATCTGTAGGTCATGATGCACTTAAAACCCATTCAGAGTCAGAATGTATTTCCCCTTATGTCTATATTGGGATGAGAACCATCAGCCCCATGCTGATTTCAGAAGAAGATGTGGTCTTGACTGACTACGATTGTCTGATTGACGATTATCATTCGTATGGCGAGAACTTTGTTTTACACCAGGTTGACTGGTATAGGGTGGTACTTGATGGAGCTGATACTCTTAAATCTTCAAGGGCAAAAGAAGCTGCTGAGGTTGCTTTCAACTTGTCGTCTCATTGCCGATGGTGGTTGACAGGAACCCCTCTTAAGATTGATTTGGAAGATATCTACAGCCTCTTATGTTTCTTGCATGTTGAGCCATGGAGCAACAAGGCATGGTGGAATGAAATTAATTCAGACGCCTTATGA

Protein Analysis

562

Amino Acids

64.03

Weight (kDa)

5.62

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIRAN PF08797 127 - 219 2.8e-12 HIRAN domain
SNF2-rel_dom PF00176 303 - 555 3.5e-28 SNF2-related domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1078
Acc36I ACCTGC 1 cut(s) 1078
AccI GTMKAC 2 cut(s) 693, 821
AccII CGCG 1 cut(s) 17
AciI CCGC 3 cut(s) 17, 401, 601
AclI AACGTT 1 cut(s) 1270
AclWI GGATC 1 cut(s) 1203
AcsI RAATTY 5 cut(s) 74, 334, 469, 620, 1095
AcuI CTGAAG 2 cut(s) 279, 1284
AcyI GRCGYC 1 cut(s) 1677
AfaI GTAC 1 cut(s) 1479
AfiI CCNNNNNNNGG 4 cut(s) 96, 1091, 1164, 1242
AflII CTTAAG 1 cut(s) 1583
AflIII ACRYGT 2 cut(s) 696, 1035
AgsI TTSAA 6 cut(s) 745, 904, 1033, 1276, 1509, 1540
AhlI ACTAGT 1 cut(s) 410
AjnI CCWGG 1 cut(s) 1455
AluBI AGCT 8 cut(s) 34, 477, 791, 914, 1171, 1262, 1490, 1523
AluI AGCT 8 cut(s) 34, 477, 791, 914, 1171, 1262, 1490, 1523
Alw26I GTCTC 3 cut(s) 313, 831, 1554
AlwI GGATC 1 cut(s) 1203
AoxI GGCC 2 cut(s) 83, 990
ApeKI GCWGC 2 cut(s) 884, 1523
ApoI RAATTY 5 cut(s) 74, 334, 469, 620, 1095
AseI ATTAAT 1 cut(s) 1668
Asp700I GAANNNNTTC 1 cut(s) 1037
AspLEI GCGC 1 cut(s) 616
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 208, 289
AsuII TTCGAA 1 cut(s) 132
AvaII GGWCC 1 cut(s) 146
BbsI GAAGAC 3 cut(s) 693, 852, 1130
BbvCI CCTCAGC 1 cut(s) 1527
BbvI GCAGC 2 cut(s) 871, 1510
BccI CCATC 6 cut(s) 46, 338, 1170, 1364, 1478, 1554
BceAI ACGGC 2 cut(s) 40, 98
BciT130I CCWGG 1 cut(s) 1457
BclI TGATCA 2 cut(s) 109, 217
BcoDI GTCTC 3 cut(s) 313, 831, 1554
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 3 cut(s) 885, 1281, 1606
BfrI CTTAAG 1 cut(s) 1583
BfuAI ACCTGC 1 cut(s) 1078
BglII AGATCT 1 cut(s) 151
BisI GCNGC 3 cut(s) 18, 885, 1524
BlsI GCNGC 3 cut(s) 19, 886, 1525
Bme1390I CCNGG 1 cut(s) 1457
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 1576
BmrFI CCNGG 1 cut(s) 1457
BmrI ACTGGG 1 cut(s) 1127
BmsI GCATC 4 cut(s) 624, 880, 1096, 1282
BmuI ACTGGG 1 cut(s) 1127
BpiI GAAGAC 3 cut(s) 693, 852, 1130
BpmI CTGGAG 1 cut(s) 743
Bpu10I CCTNAGC 1 cut(s) 1527
Bpu14I TTCGAA 1 cut(s) 132
BsaBI GATNNNNATC 4 cut(s) 65, 216, 723, 950
BsaHI GRCGYC 1 cut(s) 1677
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 1158, 1637
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 900, 930
Bsc4I CCNNNNNNNGG 4 cut(s) 96, 1091, 1164, 1242
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 2 cut(s) 1122, 1469
Bse3DI GCAATG 3 cut(s) 873, 1116, 1552
Bse8I GATNNNNATC 4 cut(s) 65, 216, 723, 950
BseBI CCWGG 1 cut(s) 1457
BseDI CCNNGG 2 cut(s) 1158, 1637
BseGI GGATG 6 cut(s) 349, 670, 790, 930, 976, 1353
BseJI GATNNNNATC 4 cut(s) 65, 216, 723, 950
BseLI CCNNNNNNNGG 4 cut(s) 96, 1091, 1164, 1242
BseMI GCAATG 3 cut(s) 873, 1116, 1552
BseMII CTCAG 3 cut(s) 324, 1056, 1518
BseNI ACTGG 2 cut(s) 1122, 1469
BseRI GAGGAG 2 cut(s) 1104, 1175
BseXI GCAGC 2 cut(s) 871, 1510
BseYI CCCAGC 1 cut(s) 984
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 85, 992
BsiSI CCGG 3 cut(s) 48, 241, 365
BslFI GGGAC 1 cut(s) 1128
BslI CCNNNNNNNGG 4 cut(s) 96, 1091, 1164, 1242
BsmAI GTCTC 3 cut(s) 313, 831, 1554
BsmBI CGTCTC 2 cut(s) 831, 1554
BsmFI GGGAC 1 cut(s) 1128
BsnI GGCC 2 cut(s) 85, 992
Bso31I GGTCTC 1 cut(s) 313
Bsp119I TTCGAA 1 cut(s) 132
Bsp143I GATC 8 cut(s) 22, 66, 109, 151, 189, 217, 515, 1208
Bsp19I CCATGG 1 cut(s) 1637
BspACI CCGC 3 cut(s) 17, 401, 601
BspANI GGCC 2 cut(s) 85, 992
BspCNI CTCAG 3 cut(s) 323, 1055, 1519
BspFNI CGCG 1 cut(s) 17
BspHI TCATGA 2 cut(s) 69, 1288
BspLI GGNNCC 1 cut(s) 1576
BspMAI CTGCAG 1 cut(s) 889
BspMI ACCTGC 1 cut(s) 1078
BspPI GGATC 1 cut(s) 1203
BspT104I TTCGAA 1 cut(s) 132
BspTI CTTAAG 1 cut(s) 1583
BspTNI GGTCTC 1 cut(s) 313
BsrDI GCAATG 3 cut(s) 873, 1116, 1552
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 2 cut(s) 1122, 1469
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 1158, 1637
BssMI GATC 8 cut(s) 22, 66, 109, 151, 189, 217, 515, 1208
BssNAI GTATAC 1 cut(s) 822
BssNI GRCGYC 1 cut(s) 1677
BssT1I CCWWGG 1 cut(s) 1637
Bst1107I GTATAC 1 cut(s) 822
Bst2UI CCWGG 1 cut(s) 1457
Bst4CI ACNGT 5 cut(s) 196, 429, 819, 998, 1129
Bst6I CTCTTC 3 cut(s) 935, 978, 1191
BstACI GRCGYC 1 cut(s) 1677
BstAFI CTTAAG 1 cut(s) 1583
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 53, 895
BstDEI CTNAG 3 cut(s) 310, 1042, 1527
BstDSI CCRYGG 1 cut(s) 1637
BstF5I GGATG 6 cut(s) 349, 670, 790, 930, 976, 1353
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 616
BstKTI GATC 8 cut(s) 25, 69, 112, 154, 192, 220, 518, 1211
BstMAI GTCTC 3 cut(s) 313, 831, 1554
BstMBI GATC 8 cut(s) 22, 66, 109, 151, 189, 217, 515, 1208
BstMWI GCNNNNNNNGC 6 cut(s) 325, 884, 890, 1520, 1532, 1633
BstNI CCWGG 1 cut(s) 1457
BstNSI RCATGY 4 cut(s) 323, 700, 1039, 1631
BstSCI CCNGG 1 cut(s) 1455
BstSFI CTRYAG 3 cut(s) 885, 1281, 1606
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 871, 1510
BstV2I GAAGAC 3 cut(s) 693, 852, 1130
BstX2I RGATCY 2 cut(s) 151, 1208
BstXI CCANNNNNNTGG 1 cut(s) 546
BstYI RGATCY 2 cut(s) 151, 1208
BstZ17I GTATAC 1 cut(s) 822
BsuRI GGCC 2 cut(s) 85, 992
BtgI CCRYGG 1 cut(s) 1637
BtsCI GGATG 6 cut(s) 349, 670, 790, 930, 976, 1353
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 2 cut(s) 318, 684
BveI ACCTGC 1 cut(s) 1078
Cac8I GCNNGC 2 cut(s) 53, 895
CciI TCATGA 2 cut(s) 69, 1288
CfoI GCGC 1 cut(s) 616
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 146
CsiI ACCWGGT 1 cut(s) 1455
Csp6I GTAC 1 cut(s) 1478
CviQI GTAC 1 cut(s) 1478
DdeI CTNAG 3 cut(s) 310, 1042, 1527
DpnI GATC 8 cut(s) 24, 68, 111, 153, 191, 219, 517, 1210
DpnII GATC 8 cut(s) 22, 66, 109, 151, 189, 217, 515, 1208
DraI TTTAAA 1 cut(s) 867
Eam1104I CTCTTC 3 cut(s) 935, 978, 1191
EarI CTCTTC 3 cut(s) 935, 978, 1191
Eco130I CCWWGG 1 cut(s) 1637
Eco147I AGGCCT 1 cut(s) 992
Eco31I GGTCTC 1 cut(s) 313
Eco32I GATATC 2 cut(s) 952, 1603
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 279, 1284
EcoRII CCWGG 1 cut(s) 1455
EcoRV GATATC 2 cut(s) 952, 1603
EcoT14I CCWWGG 1 cut(s) 1637
ErhI CCWWGG 1 cut(s) 1637
Esp3I CGTCTC 2 cut(s) 831, 1554
FaqI GGGAC 1 cut(s) 1128
FbaI TGATCA 2 cut(s) 109, 217
FblI GTMKAC 2 cut(s) 693, 821
Fnu4HI GCNGC 3 cut(s) 18, 885, 1524
FokI GGATG 6 cut(s) 356, 657, 797, 937, 963, 1360
Fsp4HI GCNGC 3 cut(s) 18, 885, 1524
FspBI CTAG 1 cut(s) 411
GlaI GCGC 1 cut(s) 615
GluI GCNGC 3 cut(s) 18, 885, 1524
GsaI CCCAGC 1 cut(s) 988
GsuI CTGGAG 1 cut(s) 743
HaeIII GGCC 2 cut(s) 85, 992
HapII CCGG 3 cut(s) 48, 241, 365
HhaI GCGC 1 cut(s) 616
Hin1I GRCGYC 1 cut(s) 1677
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HincII GTYRAC 3 cut(s) 694, 1462, 1569
HindII GTYRAC 3 cut(s) 694, 1462, 1569
HinfI GANTC 6 cut(s) 61, 134, 575, 719, 857, 1313
HpaII CCGG 3 cut(s) 48, 241, 365
HphI GGTGA 2 cut(s) 208, 289
Hpy166II GTNNAC 4 cut(s) 694, 822, 1462, 1569
Hpy8I GTNNAC 4 cut(s) 694, 822, 1462, 1569
Hpy99I CGWCG 3 cut(s) 61, 84, 511
HpyAV CCTTC 4 cut(s) 96, 196, 277, 684
HpyCH4III ACNGT 5 cut(s) 196, 429, 819, 998, 1129
HpyCH4IV ACGT 1 cut(s) 1270
HpyCH4V TGCA 9 cut(s) 127, 637, 887, 897, 1073, 1109, 1152, 1295, 1627
HpyF10VI GCNNNNNNNGC 6 cut(s) 325, 884, 890, 1520, 1532, 1633
HpyF3I CTNAG 3 cut(s) 310, 1042, 1527
HpySE526I ACGT 1 cut(s) 1270
Hsp92I GRCGYC 1 cut(s) 1677
HspAI GCGC 1 cut(s) 614
Ksp22I TGATCA 2 cut(s) 109, 217
Kzo9I GATC 8 cut(s) 22, 66, 109, 151, 189, 217, 515, 1208
LmnI GCTCC 4 cut(s) 39, 1176, 1487, 1641
Lsp1109I GCAGC 2 cut(s) 871, 1510
LweI GCATC 4 cut(s) 624, 880, 1096, 1282
MabI ACCWGGT 1 cut(s) 1455
MaeI CTAG 1 cut(s) 411
MaeII ACGT 1 cut(s) 1270
MaeIII GTNAC 2 cut(s) 43, 394
MalI GATC 8 cut(s) 24, 68, 111, 153, 191, 219, 517, 1210
MboI GATC 8 cut(s) 22, 66, 109, 151, 189, 217, 515, 1208
MfeI CAATTG 1 cut(s) 1137
MflI RGATCY 2 cut(s) 151, 1208
MlyI GAGTC 2 cut(s) 866, 1322
MmeI TCCRAC 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 1037
MseI TTAA 8 cut(s) 375, 467, 588, 866, 1299, 1500, 1584, 1668
MslI CAYNNNNRTG 1 cut(s) 1431
MspCI CTTAAG 1 cut(s) 1583
MspI CCGG 3 cut(s) 48, 241, 365
MspR9I CCNGG 1 cut(s) 1457
MunI CAATTG 1 cut(s) 1137
MvaI CCWGG 1 cut(s) 1457
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 6 cut(s) 325, 884, 890, 1520, 1532, 1633
NcoI CCATGG 1 cut(s) 1637
NdeII GATC 8 cut(s) 22, 66, 109, 151, 189, 217, 515, 1208
NlaIV GGNNCC 1 cut(s) 1576
NspI RCATGY 4 cut(s) 323, 700, 1039, 1631
NspV TTCGAA 1 cut(s) 132
PagI TCATGA 2 cut(s) 69, 1288
PaqCI CACCTGC 1 cut(s) 1078
PceI AGGCCT 1 cut(s) 992
PciI ACATGT 2 cut(s) 696, 1035
PdmI GAANNNNTTC 1 cut(s) 1037
PfeI GAWTC 4 cut(s) 61, 134, 575, 719
PkrI GCNGC 3 cut(s) 19, 886, 1525
PleI GAGTC 2 cut(s) 865, 1321
PpsI GAGTC 2 cut(s) 865, 1321
PscI ACATGT 2 cut(s) 696, 1035
PshBI ATTAAT 1 cut(s) 1668
Psp1406I AACGTT 1 cut(s) 1270
Psp6I CCWGG 1 cut(s) 1455
PspFI CCCAGC 1 cut(s) 984
PspGI CCWGG 1 cut(s) 1455
PspN4I GGNNCC 1 cut(s) 1576
PspPI GGNCC 1 cut(s) 146
PstI CTGCAG 1 cut(s) 889
PsuI RGATCY 2 cut(s) 151, 1208
RsaI GTAC 1 cut(s) 1479
RsaNI GTAC 1 cut(s) 1478
RseI CAYNNNNRTG 1 cut(s) 1431
SalI GTCGAC 1 cut(s) 692
SaqAI TTAA 8 cut(s) 375, 467, 588, 866, 1299, 1500, 1584, 1668
SatI GCNGC 3 cut(s) 18, 885, 1524
Sau3AI GATC 8 cut(s) 22, 66, 109, 151, 189, 217, 515, 1208
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 2 cut(s) 866, 1322
ScrFI CCNGG 1 cut(s) 1457
SexAI ACCWGGT 1 cut(s) 1455
SfaNI GCATC 4 cut(s) 624, 880, 1096, 1282
SfcI CTRYAG 3 cut(s) 885, 1281, 1606
SfuI TTCGAA 1 cut(s) 132
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 1431
SmlI CTYRAG 1 cut(s) 1583
SmoI CTYRAG 1 cut(s) 1583
SpeI ACTAGT 1 cut(s) 410
SseBI AGGCCT 1 cut(s) 992
SsiI CCGC 3 cut(s) 17, 401, 601
SspMI CTAG 1 cut(s) 411
StuI AGGCCT 1 cut(s) 992
StyD4I CCNGG 1 cut(s) 1455
StyI CCWWGG 1 cut(s) 1637
TaaI ACNGT 5 cut(s) 196, 429, 819, 998, 1129
TaiI ACGT 1 cut(s) 1273
TaqI TCGA 7 cut(s) 59, 132, 231, 407, 506, 693, 954
TaqII GACCGA 1 cut(s) 1172
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 4 cut(s) 61, 134, 575, 719
Tru1I TTAA 8 cut(s) 375, 467, 588, 866, 1299, 1500, 1584, 1668
Tru9I TTAA 8 cut(s) 375, 467, 588, 866, 1299, 1500, 1584, 1668
TscAI CASTG 2 cut(s) 318, 691
TseI GCWGC 2 cut(s) 884, 1523
TspDTI ATGAA 9 cut(s) 86, 437, 437, 659, 693, 801, 965, 1012, 1677
TspRI CASTG 2 cut(s) 318, 691
Vha464I CTTAAG 1 cut(s) 1583
VpaK11BI GGWCC 1 cut(s) 146
VspI ATTAAT 1 cut(s) 1668
XapI RAATTY 5 cut(s) 74, 334, 469, 620, 1095
XceI RCATGY 4 cut(s) 323, 700, 1039, 1631
XmiI GTMKAC 2 cut(s) 693, 821
XmnI GAANNNNTTC 1 cut(s) 1037
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.