Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

5767122 .. 5767924

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG032500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAAAGTGCATCATTTTCAGTCAGTGGGCCGTCATTTTTGGATCTCTTGGAGATCTCTATGAAGAGAAGAAATATCGTGTTTCAGAGGATTGATGACAATCTGTCGGAGGATAAGAGGGATAGGGTTTTGAAGGACTTCAGCCTTTACCGCACCAAAGATAAACAGGTCTTGTTGATATGTTTAAGAACTGAAGCTGGTTACGATTTTAGTGCAGCGTCTAATATCTTTTTAATGGATCCATGGTGGAATCCACCCGCTGAGGAGAAAATACTAATGAGAATTATACGCAGTAGAAAACATGGAACTGTTGTTAGAAGATTTATTGTCAAGGACACATTGGAGGAACGCATGCAACAGCTTCAGTCTAGAAAGCAGCAAATGAGTGTGGAAGTTGTCCCTGTTGAGAAAGATCGATCGGCCAGAATTGAGGACCTCAAAATGATTTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

151

Amino Acids

17.9

Weight (kDa)

9.75

Isoelectric Point (pI)

66.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	17 - 98	2.2e-08	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	151, 258
AclWI	GGATC	3 cut(s)	51, 233, 246
AcoI	YGGCCR	1 cut(s)	420
AcuI	CTGAAG	3 cut(s)	124, 213, 347
AgsI	TTSAA	1 cut(s)	133
AhdI	GACNNNNNGTC	1 cut(s)	103
AluBI	AGCT	2 cut(s)	197, 361
AluI	AGCT	2 cut(s)	197, 361
AlwI	GGATC	3 cut(s)	51, 233, 246
AoxI	GGCC	2 cut(s)	29, 420
ApeKI	GCWGC	2 cut(s)	215, 376
Asp700I	GAANNNNTTC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	29, 433
AvaII	GGWCC	1 cut(s)	433
BamHI	GGATCC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	227, 388
BceAI	ACGGC	1 cut(s)	16
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BfaI	CTAG	1 cut(s)	369
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	2 cut(s)	216, 377
BlsI	GCNGC	2 cut(s)	217, 378
Bme18I	GGWCC	1 cut(s)	433
BmeRI	GACNNNNNGTC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	29, 433
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	1 cut(s)	20
Bpu10I	CCTNAGC	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	415
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	99
BseCI	ATCGAT	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	242
BseJI	GATNNNNATC	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	227, 388
BsgI	GTGCAG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	419
BshFI	GGCC	2 cut(s)	31, 422
BshVI	ATCGAT	1 cut(s)	415
BsiEI	CGRYCG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	2 cut(s)	31, 422
Bsp143I	GATC	5 cut(s)	43, 54, 238, 412, 416
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	2 cut(s)	151, 258
BspANI	GGCC	2 cut(s)	31, 422
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	3 cut(s)	51, 233, 246
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	5 cut(s)	43, 54, 238, 412, 416
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	242
BstKTI	GATC	5 cut(s)	46, 57, 241, 415, 419
BstMBI	GATC	5 cut(s)	43, 54, 238, 412, 416
BstMCI	CGRYCG	1 cut(s)	419
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	227, 388
BstX2I	RGATCY	3 cut(s)	43, 54, 238
BstYI	RGATCY	3 cut(s)	43, 54, 238
Bsu15I	ATCGAT	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	31, 422
BsuTUI	ATCGAT	1 cut(s)	415
BtgI	CCRYGG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	29, 433
ClaI	ATCGAT	1 cut(s)	415
CseI	GACGC	1 cut(s)	207
CviAII	CATG	3 cut(s)	243, 302, 352
CviJI	RGCY	5 cut(s)	31, 144, 197, 361, 422
CviKI_1	RGCY	5 cut(s)	31, 144, 197, 361, 422
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	5 cut(s)	45, 56, 240, 414, 418
DpnII	GATC	5 cut(s)	43, 54, 238, 412, 416
DriI	GACNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	59
Eam1105I	GACNNNNNGTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	3 cut(s)	124, 213, 347
EcoO109I	RGGNCCY	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	3 cut(s)	246, 305, 355
FaiI	YATR	6 cut(s)	62, 181, 244, 287, 303, 353
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	242, 301, 351
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	216, 377
Fsp4HI	GCNGC	2 cut(s)	216, 377
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	2 cut(s)	216, 377
HaeIII	GGCC	2 cut(s)	31, 422
HgaI	GACGC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	246, 305, 355
HinfI	GANTC	1 cut(s)	250
Hpy188I	TCNGA	3 cut(s)	87, 109, 452
Hpy188III	TCNNGA	1 cut(s)	369
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	3 cut(s)	11, 215, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	246, 305, 355
Kzo9I	GATC	5 cut(s)	43, 54, 238, 412, 416
LpnPI	CCDG	4 cut(s)	152, 183, 414, 436
Lsp1109I	GCAGC	2 cut(s)	227, 388
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	5 cut(s)	45, 56, 240, 414, 418
MboI	GATC	5 cut(s)	43, 54, 238, 412, 416
MboII	GAAGA	3 cut(s)	76, 81, 330
MflI	RGATCY	3 cut(s)	43, 54, 238
MluCI	AATT	2 cut(s)	282, 426
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	7 cut(s)	81, 103, 111, 256, 337, 424, 446
MroXI	GAANNNNTTC	1 cut(s)	137
MseI	TTAA	2 cut(s)	185, 233
MspA1I	CMGCKG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	242
NdeII	GATC	5 cut(s)	43, 54, 238, 412, 416
NlaIII	CATG	3 cut(s)	246, 305, 355
NlaIV	GGNNCC	1 cut(s)	240
NspI	RCATGY	1 cut(s)	355
PaeI	GCATGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	217, 378
Ple19I	CGATCG	1 cut(s)	419
PpuMI	RGGWCCY	1 cut(s)	433
Psp5II	RGGWCCY	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	29, 433
PspPPI	RGGWCCY	1 cut(s)	433
PsuI	RGATCY	3 cut(s)	43, 54, 238
PvuI	CGATCG	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	185, 233
SatI	GCNGC	2 cut(s)	216, 377
Sau3AI	GATC	5 cut(s)	43, 54, 238, 412, 416
Sau96I	GGNCC	2 cut(s)	29, 433
SetI	ASST	4 cut(s)	171, 199, 363, 438
SfaNI	GCATC	1 cut(s)	20
SinI	GGWCC	1 cut(s)	433
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	2 cut(s)	282, 426
SsiI	CCGC	2 cut(s)	151, 258
SspMI	CTAG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	415
TasI	AATT	2 cut(s)	282, 426
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	185, 233
Tru9I	TTAA	2 cut(s)	185, 233
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	2 cut(s)	215, 376
TspDTI	ATGAA	2 cut(s)	17, 77
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	433
XbaI	TCTAGA	1 cut(s)	368
XceI	RCATGY	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.