Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

5802534 .. 5806112

Gene Structure 3579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G002930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGAATGGGCAAAATGTGTTGTTCCTCTTGTGAATTCGGGGAAGGTTAAAGTTCTTGGGCGGTTTAATGGTGCGCCGAAATTCCTATCTATGATGCAAGAGGTCATATTGTCTTTGAGTTTTTATGTTCACCATTCAATTTCCGCTGCTGTTGAGGTGTCTTCATGTAAGCGAGAGGATTCTTATCCTTTTCTCACCTTGTGCAAATTGCTGAAACTCCAACCATATCAGAAGTGCGATCTGGATGAAGCTGTCAAACAAAGAAAGGGTAGCCAACAGTATACATTAGAAAACAGAGACGAAGAAGCCACTTCAGAGTCTTCTCTAAATAACGTTGGTGCTGCTGCAGATGCGTGTAACTTGAAGAAACAAGCACTCCATTGGATGTCAGAATTTGAGAAGGGGATTGATGTTGAGAAGTCAGCACCAACTCTTCATCCTTGCTGGGAGGCCTATCGTATATGTGATGAGAGGGCTTCTTTCATCTATGTGAACATGTTCTCAGGGGAGGCAACCACACACTTACCAACTGCAACAGAAACGCCAAGAGGAGGAGATGCGCTTAAAACCCATTCAGAGTCAGAAAGTATTTCCACTTTGGTCCATGTTTGGAGAACCATCAGCCCCGTGGTAATTTCAGAACAAGATGTGGTCTTGACTGACTATGATTTTCTGATTGATGATTATTATACGTATGGCGAGAACAGTGTTTTACACCAGGTTGACTGGTATAGGGTGGTGCTCGATGAGATGATACTCTTGGATCTTCAAGGGCAAAAAAAGCTGCTAAGCTGGAAGAAATTAATTCAGACACCTTATGAACATGGTGATCCAAGAGGATTGAGATTGATAAAGGACATTTTGAGGCCATCGATGTTAAGAAGAACAAAGAAGGCAAAGGAGAAAGATGGAAGCCCCATACTCATTCTTCCTCCTGACATTGAAACCATTGAGTGTCATCAGTCTGAAGCTGAACAAGAGTTCTATGATGCCCTTTTTAAGAGATCAAAAGTTCCGTTTGACCAGTTTGTGGCACAAGGCAAGGTTCTTCACAACTATGAAAATGCCCTTGGGCTACTGCTTTGTTTAAGGCAGTGTTGCAACCACCCATTTTTTGTTTCGAGTCAGCATGATTCACAAAACTATGCAGACTTGGACAAGCCTGTTAGAAGATTCCTTGAAACCCATCATGATTCTCCAAGTTCAGATCAGATTCTCCCCACCCATTACATGTCGGAGAGGTTGTTGAGCGTATCTGTCGGGTTGGAAATACAGTGTGTCCCATATGCTTGGATTGCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

434

Amino Acids

49.54

Weight (kDa)

5.76

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	261 - 371	1.3e-09	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1030
AccI	GTMKAC	1 cut(s)	281
AciI	CCGC	2 cut(s)	61, 144
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	2 cut(s)	771, 824
AcsI	RAATTY	3 cut(s)	34, 80, 392
AcuI	CTGAAG	2 cut(s)	297, 987
AdeI	CACNNNGTG	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	551, 1030
AflIII	ACRYGT	2 cut(s)	495, 1230
AgsI	TTSAA	5 cut(s)	138, 364, 770, 944, 1181
AjnI	CCWGG	1 cut(s)	717
AjuI	GAANNNNNNNTTGG	2 cut(s)	1053, 1085
AluBI	AGCT	4 cut(s)	251, 784, 792, 971
AluI	AGCT	4 cut(s)	251, 784, 792, 971
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	2 cut(s)	771, 824
AoxI	GGCC	2 cut(s)	450, 866
ApeKI	GCWGC	4 cut(s)	146, 341, 344, 784
ApoI	RAATTY	3 cut(s)	34, 80, 392
AseI	ATTAAT	1 cut(s)	803
Asp700I	GAANNNNTTC	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	76, 562
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	3 cut(s)	122, 187, 839
AvaII	GGWCC	1 cut(s)	601
BbsI	GAAGAC	2 cut(s)	153, 312
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	4 cut(s)	133, 328, 331, 771
BccI	CCATC	4 cut(s)	626, 877, 902, 1194
BciT130I	CCWGG	1 cut(s)	719
BcoDI	GTCTC	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	4 cut(s)	147, 342, 345, 785
BlpI	GCTNAGC	1 cut(s)	788
BlsI	GCNGC	4 cut(s)	148, 343, 346, 786
Bme1390I	CCNGG	1 cut(s)	719
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	601
BmrFI	CCNGG	1 cut(s)	719
BmsI	GCATC	4 cut(s)	84, 340, 547, 979
BpiI	GAAGAC	2 cut(s)	153, 312
Bpu1102I	GCTNAGC	1 cut(s)	788
Bsa29I	ATCGAT	1 cut(s)	872
BsaAI	YACGTR	1 cut(s)	693
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	627, 1069
BsaXI	ACNNNNNCTCC	4 cut(s)	360, 390, 1229, 1259
Bsc4I	CCNNNNNNNGG	2 cut(s)	551, 1030
Bse1I	ACTGG	2 cut(s)	731, 1024
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	719
BseCI	ATCGAT	1 cut(s)	872
BseDI	CCNNGG	2 cut(s)	627, 1069
BseGI	GGATG	3 cut(s)	250, 390, 436
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	551, 1030
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	2 cut(s)	731, 1024
BseRI	GAGGAG	2 cut(s)	564, 567
BseXI	GCAGC	4 cut(s)	133, 328, 331, 771
BseYI	CCCAGC	1 cut(s)	444
BshFI	GGCC	2 cut(s)	452, 868
BshVI	ATCGAT	1 cut(s)	872
BsiHKAI	GWGCWC	1 cut(s)	744
BslFI	GGGAC	1 cut(s)	1265
BslI	CCNNNNNNNGG	2 cut(s)	551, 1030
BsmAI	GTCTC	1 cut(s)	291
BsmBI	CGTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	1265
BsnI	GGCC	2 cut(s)	452, 868
Bsp1286I	GDGCHC	1 cut(s)	744
Bsp143I	GATC	5 cut(s)	238, 763, 829, 1004, 1207
Bsp1720I	GCTNAGC	1 cut(s)	788
BspACI	CCGC	2 cut(s)	61, 144
BspANI	GGCC	2 cut(s)	452, 868
BspCNI	CTCAG	1 cut(s)	515
BspDI	ATCGAT	1 cut(s)	872
BspHI	TCATGA	1 cut(s)	1189
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	2 cut(s)	771, 824
BsrI	ACTGG	2 cut(s)	731, 1024
BssECI	CCNNGG	2 cut(s)	627, 1069
BssMI	GATC	5 cut(s)	238, 763, 829, 1004, 1207
BssNAI	GTATAC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	1069
Bst1107I	GTATAC	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	3 cut(s)	279, 707, 1275
Bst6I	CTCTTC	1 cut(s)	438
BstBAI	YACGTR	1 cut(s)	693
BstDEI	CTNAG	2 cut(s)	502, 788
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	3 cut(s)	250, 390, 436
BstHHI	GCGC	2 cut(s)	76, 562
BstKTI	GATC	5 cut(s)	241, 766, 832, 1007, 1210
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	5 cut(s)	238, 763, 829, 1004, 1207
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 781, 1295
BstNI	CCWGG	1 cut(s)	719
BstNSI	RCATGY	2 cut(s)	499, 1234
BstSCI	CCNGG	1 cut(s)	717
BstSFI	CTRYAG	1 cut(s)	345
BstSNI	TACGTA	1 cut(s)	693
BstV1I	GCAGC	4 cut(s)	133, 328, 331, 771
BstV2I	GAAGAC	2 cut(s)	153, 312
BstX2I	RGATCY	1 cut(s)	763
BstXI	CCANNNNNNTGG	1 cut(s)	1290
BstYI	RGATCY	1 cut(s)	763
BstZ17I	GTATAC	1 cut(s)	282
Bsu15I	ATCGAT	1 cut(s)	872
BsuRI	GGCC	2 cut(s)	452, 868
BsuTUI	ATCGAT	1 cut(s)	872
BtgI	CCRYGG	1 cut(s)	627
BtsCI	GGATG	3 cut(s)	250, 390, 436
BtsI	GCAGTG	1 cut(s)	1100
BtsIMutI	CAGTG	3 cut(s)	712, 1100, 1280
CciI	TCATGA	1 cut(s)	1189
CfoI	GCGC	2 cut(s)	76, 562
Cfr13I	GGNCC	1 cut(s)	601
ClaI	ATCGAT	1 cut(s)	872
CsiI	ACCWGGT	1 cut(s)	717
CviAII	CATG	7 cut(s)	165, 496, 605, 824, 1130, 1190, 1231
DdeI	CTNAG	2 cut(s)	502, 788
DpnI	GATC	5 cut(s)	240, 765, 831, 1006, 1209
DpnII	GATC	5 cut(s)	238, 763, 829, 1004, 1207
DraIII	CACNNNGTG	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco105I	TACGTA	1 cut(s)	693
Eco130I	CCWWGG	1 cut(s)	1069
Eco147I	AGGCCT	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	601
Eco57I	CTGAAG	2 cut(s)	297, 987
EcoRI	GAATTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	717
EcoT14I	CCWWGG	1 cut(s)	1069
ErhI	CCWWGG	1 cut(s)	1069
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	7 cut(s)	168, 499, 608, 827, 1133, 1193, 1234
FaqI	GGGAC	1 cut(s)	1265
FatI	CATG	7 cut(s)	164, 495, 604, 823, 1129, 1189, 1230
FauNDI	CATATG	1 cut(s)	1285
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	4 cut(s)	147, 342, 345, 785
FokI	GGATG	3 cut(s)	257, 397, 423
Fsp4HI	GCNGC	4 cut(s)	147, 342, 345, 785
GlaI	GCGC	2 cut(s)	75, 561
GluI	GCNGC	4 cut(s)	147, 342, 345, 785
GsaI	CCCAGC	1 cut(s)	448
HaeIII	GGCC	2 cut(s)	452, 868
HhaI	GCGC	2 cut(s)	76, 562
Hin1II	CATG	7 cut(s)	168, 499, 608, 827, 1133, 1193, 1234
Hin6I	GCGC	2 cut(s)	74, 560
HinP1I	GCGC	2 cut(s)	74, 560
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HinfI	GANTC	8 cut(s)	179, 317, 578, 1123, 1133, 1173, 1193, 1213
HphI	GGTGA	3 cut(s)	122, 187, 839
Hpy166II	GTNNAC	4 cut(s)	130, 282, 493, 724
Hpy188III	TCNNGA	4 cut(s)	242, 655, 935, 1190
Hpy8I	GTNNAC	4 cut(s)	130, 282, 493, 724
HpyAV	CCTTC	3 cut(s)	37, 394, 886
HpyCH4III	ACNGT	3 cut(s)	279, 707, 1275
HpyCH4IV	ACGT	2 cut(s)	333, 692
HpyCH4V	TGCA	7 cut(s)	97, 204, 347, 533, 1101, 1148, 1298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 781, 1295
HpyF3I	CTNAG	2 cut(s)	502, 788
HpySE526I	ACGT	2 cut(s)	333, 692
Hsp92II	CATG	7 cut(s)	168, 499, 608, 827, 1133, 1193, 1234
HspAI	GCGC	2 cut(s)	74, 560
Kzo9I	GATC	5 cut(s)	238, 763, 829, 1004, 1207
Lsp1109I	GCAGC	4 cut(s)	133, 328, 331, 771
LweI	GCATC	4 cut(s)	84, 340, 547, 979
MabI	ACCWGGT	1 cut(s)	717
MaeII	ACGT	2 cut(s)	333, 692
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	5 cut(s)	240, 765, 831, 1006, 1209
MboI	GATC	5 cut(s)	238, 763, 829, 1004, 1207
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	1 cut(s)	744
MluCI	AATT	8 cut(s)	34, 80, 138, 206, 392, 633, 800, 804
MlyI	GAGTC	3 cut(s)	326, 587, 1132
MmeI	TCCRAC	3 cut(s)	244, 1215, 1245
MroXI	GAANNNNTTC	1 cut(s)	497
MseI	TTAA	7 cut(s)	48, 66, 564, 803, 878, 999, 1088
MslI	CAYNNNNRTG	2 cut(s)	488, 1056
MspA1I	CMGCKG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	719
MvaI	CCWGG	1 cut(s)	719
MwoI	GCNNNNNNNGC	3 cut(s)	350, 781, 1295
NdeI	CATATG	1 cut(s)	1285
NdeII	GATC	5 cut(s)	238, 763, 829, 1004, 1207
NlaIII	CATG	7 cut(s)	168, 499, 608, 827, 1133, 1193, 1234
NspI	RCATGY	2 cut(s)	499, 1234
PagI	TCATGA	1 cut(s)	1189
PceI	AGGCCT	1 cut(s)	452
PciI	ACATGT	2 cut(s)	495, 1230
PdmI	GAANNNNTTC	1 cut(s)	497
PfeI	GAWTC	5 cut(s)	179, 1133, 1173, 1193, 1213
PflMI	CCANNNNNTGG	1 cut(s)	1030
PkrI	GCNGC	4 cut(s)	148, 343, 346, 786
PleI	GAGTC	3 cut(s)	325, 586, 1131
PpsI	GAGTC	3 cut(s)	325, 586, 1131
Ppu21I	YACGTR	1 cut(s)	693
PscI	ACATGT	2 cut(s)	495, 1230
PshBI	ATTAAT	1 cut(s)	803
Psp1406I	AACGTT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	717
PspFI	CCCAGC	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	717
PspPI	GGNCC	1 cut(s)	601
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	763
RseI	CAYNNNNRTG	2 cut(s)	488, 1056
SaqAI	TTAA	7 cut(s)	48, 66, 564, 803, 878, 999, 1088
SatI	GCNGC	4 cut(s)	147, 342, 345, 785
Sau3AI	GATC	5 cut(s)	238, 763, 829, 1004, 1207
Sau96I	GGNCC	1 cut(s)	601
SchI	GAGTC	3 cut(s)	326, 587, 1132
ScrFI	CCNGG	1 cut(s)	719
SduI	GDGCHC	1 cut(s)	744
SexAI	ACCWGGT	1 cut(s)	717
SfaNI	GCATC	4 cut(s)	84, 340, 547, 979
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	601
SmiMI	CAYNNNNRTG	2 cut(s)	488, 1056
SnaBI	TACGTA	1 cut(s)	693
Sse9I	AATT	8 cut(s)	34, 80, 138, 206, 392, 633, 800, 804
SseBI	AGGCCT	1 cut(s)	452
SsiI	CCGC	2 cut(s)	61, 144
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	717
StyI	CCWWGG	1 cut(s)	1069
TaaI	ACNGT	3 cut(s)	279, 707, 1275
TaiI	ACGT	2 cut(s)	336, 695
TaqI	TCGA	3 cut(s)	744, 872, 1121
TasI	AATT	8 cut(s)	34, 80, 138, 206, 392, 633, 800, 804
TfiI	GAWTC	5 cut(s)	179, 1133, 1173, 1193, 1213
Tru1I	TTAA	7 cut(s)	48, 66, 564, 803, 878, 999, 1088
Tru9I	TTAA	7 cut(s)	48, 66, 564, 803, 878, 999, 1088
TscAI	CASTG	3 cut(s)	712, 1100, 1280
TseI	GCWGC	4 cut(s)	146, 341, 344, 784
TspDTI	ATGAA	6 cut(s)	153, 261, 425, 472, 834, 1074
TspGWI	ACGGA	1 cut(s)	1005
TspRI	CASTG	3 cut(s)	712, 1100, 1280
Van91I	CCANNNNNTGG	1 cut(s)	1030
VpaK11BI	GGWCC	1 cut(s)	601
VspI	ATTAAT	1 cut(s)	803
XapI	RAATTY	3 cut(s)	34, 80, 392
XceI	RCATGY	2 cut(s)	499, 1234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.