Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Forward (+)

44905380 .. 44906626

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034555

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAATGGGCAAAATGTGTTGTTCCTCTTGTGAATTCTGGTAAGGTTAAAGTTCTTGGGCGGTTTATGGTTATGCCCAAGTTCCTATCTATGATGCAAGATATCATATTGTCCATAAGACCAGGTAAAAGAGGCTCTAGTGATATCGAAATTACAAAGAAGAGGAAGATAGATTCAGATACAACTGCCCCATTGAAACCAAAGGGAGGCACTGTTGTTGTTTGTCCCCTGTCTTTGTTAAGCCAGTGGAAGGATGAGCTTCAAACTCATTCAGAGCCCGAAAGTAGTTCCATTTTTGTTCACTATGGTGGACACAAAACTGCTAACCCCAAGGCAATCTCGGTACATGATGTGGTCATGACAACATATGGTGTCTTGGCTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

130

Amino Acids

14.09

Weight (kDa)

9.48

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	59 - 126	1.9e-08	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	34
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	206, 250
AgsI	TTSAA	2 cut(s)	196, 263
AjnI	CCWGG	1 cut(s)	121
AleI	CACNNNNGTG	1 cut(s)	306
AluBI	AGCT	2 cut(s)	259, 386
AluI	AGCT	2 cut(s)	259, 386
ApeKI	GCWGC	2 cut(s)	380, 383
ApoI	RAATTY	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	123
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	2 cut(s)	381, 384
BlsI	GCNGC	2 cut(s)	382, 385
Bme1390I	CCNGG	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 250
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	206, 250
BseNI	ACTGG	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	206, 250
BsmFI	GGGAC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	279
BspACI	CCGC	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	210, 251
CciI	TCATGA	1 cut(s)	357
CsiI	ACCWGGT	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	2 cut(s)	347, 358
CviJI	RGCY	6 cut(s)	135, 243, 259, 277, 380, 386
CviKI_1	RGCY	6 cut(s)	135, 243, 259, 277, 380, 386
CviQI	GTAC	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	279
Eco32I	GATATC	2 cut(s)	103, 145
EcoRI	GAATTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	121
EcoRV	GATATC	2 cut(s)	103, 145
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	2 cut(s)	350, 361
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	2 cut(s)	346, 357
FauNDI	CATATG	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	381, 384
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	2 cut(s)	381, 384
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	2 cut(s)	381, 384
Hin1II	CATG	2 cut(s)	350, 361
HinfI	GANTC	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	301, 311
Hpy188I	TCNGA	2 cut(s)	178, 274
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	2 cut(s)	301, 311
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	97, 383
Hsp92II	CATG	2 cut(s)	350, 361
LpnPI	CCDG	5 cut(s)	24, 108, 135, 242, 257
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	84
MabI	ACCWGGT	1 cut(s)	121
MaeI	CTAG	1 cut(s)	138
MboII	GAAGA	2 cut(s)	172, 178
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	2 cut(s)	34, 150
MnlI	CCTC	4 cut(s)	36, 125, 156, 200
MseI	TTAA	3 cut(s)	48, 239, 388
MslI	CAYNNNNRTG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	367
NlaIII	CATG	2 cut(s)	350, 361
OliI	CACNNNNGTG	1 cut(s)	306
PagI	TCATGA	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	382, 385
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	385
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	3 cut(s)	48, 239, 388
SatI	GCNGC	2 cut(s)	381, 384
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	4 cut(s)	48, 127, 261, 388
SexAI	ACCWGGT	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	2 cut(s)	34, 150
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	34, 150
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	3 cut(s)	48, 239, 388
Tru9I	TTAA	3 cut(s)	48, 239, 388
TscAI	CASTG	2 cut(s)	217, 251
TseI	GCWGC	2 cut(s)	380, 383
TspRI	CASTG	2 cut(s)	217, 251
XapI	RAATTY	1 cut(s)	34
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.