Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

6927521 .. 6928235

Gene Structure 715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36432

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGATACAGAACACGTGGCTGATCGGTACAAGGTCCCGTCAGTTATCGGTGAGGCCATCAATTCCGATCATGAAATTCCGACGGCCGTGACGGTTAAGCGGACAAACACGAGCTCCAGGGCTCGCATTTCGACTCTTATCAAGCAACAGTGCATTGAGGAATTTGATGAAGTTGCGGAAAGTCGAAGGACATTGATTCCGGAGCCGAAGGCCAAGAGGGTAAAGGAGGAAGTTCCTGATTGTGAAGTGGTGTCGGTGCAACAGGTGAGACCTCAAAATTTGGAGGATGGCGATTTCAAGATTGAGCCGGATTGGTTCTTGGTGGGAAGCACATTGGTTACTGCGGTTTCGACTAGTAAAGGCATGAAATTGTTGGACAATGAGATTGTTCATCTCTCTTTTCCTTCCTCAAATTCCAGCTACAAAACCCAATGGATTGTTCCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

149

Amino Acids

16.79

Weight (kDa)

5.25

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	3 cut(s)	100, 176, 344
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	4 cut(s)	75, 161, 277, 412
AcvI	CACGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	298
AhlI	ACTAGT	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	1 cut(s)	423
AluBI	AGCT	2 cut(s)	114, 420
AluI	AGCT	2 cut(s)	114, 420
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	3 cut(s)	54, 84, 210
ApoI	RAATTY	4 cut(s)	75, 161, 277, 412
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	62, 277
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	116, 124
BauI	CACGAG	1 cut(s)	109
BbrPI	CACGTG	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	116
BccI	CCATC	2 cut(s)	65, 281
BceAI	ACGGC	2 cut(s)	71, 99
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	262
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	2 cut(s)	354, 448
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	36, 204
BmrFI	CCNGG	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	292
BseX3I	CGGCCG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	56, 86, 212
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	200, 308
BslFI	GGGAC	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	3 cut(s)	56, 86, 212
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	116, 124
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	22, 67
BspACI	CCGC	3 cut(s)	100, 176, 344
BspANI	GGCC	3 cut(s)	56, 86, 212
BspEI	TCCGGA	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	36, 204
BspTNI	GGTCTC	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	22, 67
BssSI	CACGAG	1 cut(s)	109
Bst2BI	CACGAG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	94, 150
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	2 cut(s)	25, 70
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	2 cut(s)	22, 67
BstMCI	CGRYCG	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstZI	CGGCCG	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	56, 86, 212
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	124
CciI	TCATGA	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	71, 364
CviJI	RGCY	9 cut(s)	20, 56, 86, 114, 122, 205, 212, 307, 420
CviKI_1	RGCY	9 cut(s)	20, 56, 86, 114, 122, 205, 212, 307, 420
CviQI	GTAC	1 cut(s)	28
DpnI	GATC	2 cut(s)	24, 69
DpnII	GATC	2 cut(s)	22, 67
EaeI	YGGCCR	1 cut(s)	84
EagI	CGGCCG	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	114
EclXI	CGGCCG	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	116, 124
Eco31I	GGTCTC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	34
Eco52I	CGGCCG	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	114
Eco72I	CACGTG	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	116
EcoT38I	GRGCYC	2 cut(s)	116, 124
FaeI	CATG	2 cut(s)	74, 367
FaiI	YATR	2 cut(s)	72, 365
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	70, 363
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	2 cut(s)	116, 124
FspBI	CTAG	2 cut(s)	354, 448
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	56, 86, 212
HapII	CCGG	2 cut(s)	200, 308
Hin1II	CATG	2 cut(s)	74, 367
HinfI	GANTC	2 cut(s)	133, 196
HpaII	CCGG	2 cut(s)	200, 308
HphI	GGTGA	2 cut(s)	62, 277
Hpy188I	TCNGA	2 cut(s)	67, 81
Hpy188III	TCNNGA	4 cut(s)	71, 200, 236, 298
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	180, 202, 414
HpyCH4III	ACNGT	2 cut(s)	94, 150
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	153, 259
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	74, 367
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	22, 67
LmnI	GCTCC	2 cut(s)	119, 202
LpnPI	CCDG	7 cut(s)	103, 130, 213, 248, 249, 321, 430
MaeI	CTAG	2 cut(s)	354, 448
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	88, 337
MalI	GATC	2 cut(s)	24, 69
MboI	GATC	2 cut(s)	22, 67
MhlI	GDGCHC	2 cut(s)	116, 124
MluCI	AATT	6 cut(s)	61, 75, 161, 277, 368, 412
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	104, 354
MnlI	CCTC	7 cut(s)	46, 151, 210, 220, 277, 282, 418
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	1 cut(s)	96
MspI	CCGG	2 cut(s)	200, 308
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
NdeII	GATC	2 cut(s)	22, 67
NlaIII	CATG	2 cut(s)	74, 367
NlaIV	GGNNCC	2 cut(s)	36, 204
NmuCI	GTSAC	1 cut(s)	88
PagI	TCATGA	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	127
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	116
PspCI	CACGTG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	36, 204
PspPI	GGNCC	1 cut(s)	34
PspPPI	RGGWCCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	22, 67
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	116, 124
SetI	ASST	6 cut(s)	18, 36, 116, 267, 274, 422
SinI	GGWCC	1 cut(s)	34
SpeI	ACTAGT	1 cut(s)	353
Sse9I	AATT	6 cut(s)	61, 75, 161, 277, 368, 412
SsiI	CCGC	3 cut(s)	100, 176, 344
SspMI	CTAG	2 cut(s)	354, 448
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	94, 150
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	131, 184, 350
TasI	AATT	6 cut(s)	61, 75, 161, 277, 368, 412
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	4 cut(s)	87, 183, 380, 380
TspRI	CASTG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	4 cut(s)	75, 161, 277, 412
XspI	CTAG	2 cut(s)	354, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.