Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

41891086 .. 41892884

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAATGGGCAAAATGTGTTGTTCCACTTGTACAATCTGGAAAGGTTAAAGTTCGTGGGCGGTGTATAGCTGCACCTCAAGTGCTTTCTATGATGCAAGAGATCATGTTGTATATAAGTTTTTATATTCACCATTCAATTTTCATGGAAGTTGACAGGTCCTCATGGAAGCTAGATGCTTCCCCTAACATCGATTCCACTATATATCCTCTCCTCACTCTGTTCAAATTGTTGAAAGTCCAACCATATCAGAAGGCTGAGTTCACTCCAGAAGAACTTGATTCCCGAAAACGTCTTCTGATTATTGAACGTATTCCAAATGAAGCTCCATTAGCATTGCCTGCACCAAAACGCAGAAAGGGTTCCCAACAGAATCCCGAAGAAAACAAAGATGAACAAGCCATTTCTGAGTCATCTCTAAACAAGATTGTTGGTGCGGCAGAAGTATATGACTTAAAGGTGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

155

Amino Acids

17.69

Weight (kDa)

8.5

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	61, 437
AfaI	GTAC	1 cut(s)	33
AgsI	TTSAA	4 cut(s)	138, 226, 235, 308
AluBI	AGCT	3 cut(s)	71, 172, 326
AluI	AGCT	3 cut(s)	71, 172, 326
ApeKI	GCWGC	1 cut(s)	71
Asp700I	GAANNNNTTC	2 cut(s)	312, 361
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	2 cut(s)	72, 438
BlsI	GCNGC	2 cut(s)	73, 439
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	364
BmsI	GCATC	2 cut(s)	84, 166
BpiI	GAAGAC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	335
BseCI	ATCGAT	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	249, 399
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	2 cut(s)	57, 327
BshVI	ATCGAT	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	2 cut(s)	61, 437
BspCNI	CTCAG	2 cut(s)	250, 400
BspDI	ATCGAT	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	31
BssMI	GATC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	258, 408
BstEII	GGTNACC	1 cut(s)	460
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 341
BstPI	GGTNACC	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	192
BsuTUI	ATCGAT	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	3 cut(s)	106, 145, 165
CviJI	RGCY	5 cut(s)	71, 172, 257, 326, 401
CviKI_1	RGCY	5 cut(s)	71, 172, 257, 326, 401
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	2 cut(s)	258, 408
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	159
Eco91I	GGTNACC	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	159
EcoO65I	GGTNACC	1 cut(s)	460
FaeI	CATG	3 cut(s)	109, 148, 168
FatI	CATG	3 cut(s)	105, 144, 164
Fnu4HI	GCNGC	2 cut(s)	72, 438
Fsp4HI	GCNGC	2 cut(s)	72, 438
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	2 cut(s)	72, 438
GsuI	CTGGAG	1 cut(s)	252
Hin1II	CATG	3 cut(s)	109, 148, 168
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	4 cut(s)	194, 281, 373, 410
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	154, 264
Hpy188I	TCNGA	3 cut(s)	252, 300, 409
Hpy188III	TCNNGA	4 cut(s)	39, 269, 285, 377
Hpy8I	GTNNAC	2 cut(s)	154, 264
HpyAV	CCTTC	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	292, 310
HpyCH4V	TGCA	3 cut(s)	74, 97, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 341
HpyF3I	CTNAG	2 cut(s)	258, 408
HpySE526I	ACGT	2 cut(s)	292, 310
Hsp92II	CATG	3 cut(s)	109, 148, 168
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	4 cut(s)	24, 142, 282, 354
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	2 cut(s)	84, 166
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	2 cut(s)	292, 310
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	3 cut(s)	284, 287, 392
MluCI	AATT	2 cut(s)	138, 227
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	87, 172, 219, 224
MroXI	GAANNNNTTC	2 cut(s)	312, 361
MseI	TTAA	2 cut(s)	48, 455
MwoI	GCNNNNNNNGC	2 cut(s)	332, 341
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	3 cut(s)	109, 148, 168
NlaIV	GGNNCC	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	460
PdmI	GAANNNNTTC	2 cut(s)	312, 361
PfeI	GAWTC	3 cut(s)	194, 281, 373
PkrI	GCNGC	2 cut(s)	73, 439
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	48, 455
SatI	GCNGC	2 cut(s)	72, 438
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	419
SfaNI	GCATC	2 cut(s)	84, 166
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	2 cut(s)	138, 227
SsiI	CCGC	2 cut(s)	61, 437
SspMI	CTAG	1 cut(s)	173
TaiI	ACGT	2 cut(s)	295, 313
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	138, 227
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	440
TfiI	GAWTC	3 cut(s)	194, 281, 373
Tru1I	TTAA	2 cut(s)	48, 455
Tru9I	TTAA	2 cut(s)	48, 455
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	3 cut(s)	133, 336, 408
VpaK11BI	GGWCC	1 cut(s)	159
XmnI	GAANNNNTTC	2 cut(s)	312, 361
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.