Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001174.1

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Forward (+)

85806 .. 87596

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001174.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atggatacagaacgcggggctgatcggcacaaagtcccgtcagttattggtgaggccatcaattccgatcaagaaattccgacggccgtgacggttaagcggacgaatacaagctccggggctcgcgtttcgactcttatcaagcaagagtgcattgaggattttgatgaagttgcggaaagtcgaagcactttgattccggagcctaaggtcaagagggtaaagaaggaagttcctgactgtgaactggtgtcagtgagacctcagaatttggaggatggcgatttcaagattgagccggattggttcttggtgggaagcacattggttacggcggtttcgactagtaaaggcatgaaattgttggacaatgagattgttcatctctcttttccttcctcaaattccagctacaaaacccaatggattgttcgtttttcgacgaaaagatcaggagagattggtcggtttccaatggaatgggcaaaatgtgttgttcctcttgtgaattcggggaaggttaaagttcttgggcggtttaatggtgcgccgaaattcctatctatgatgcaagaggtcatattgtctttgagtttttatgttcaccattcaatttccgctgctgttgaggtgtcttcatgtaagcgagaggattcttatccttttctcaccttgttcaaattgctgaaactccaaccatatcagaagtgcgatctggatgaagctgtcaaacaaagaaagggtagccaacagtatacattagaaaacagagacgaagaagccacttcagagtcttctctaaataacgttggtgctgctgcagatgcgtgtaacttgaaggagaaggaacccccaagtactctcaagtttaatctgaggccataccagaaacaagcactccattggatgtcagaatttgagaaggggattgatgttgagaagtcagcaccaactcttcatccttgctgggaggcctatcgtatatgtgatgagtatgcagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

334

Amino Acids

37.59

Weight (kDa)

6.15

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	755
AccII	CGCG	2 cut(s)	15, 126
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	6 cut(s)	15, 100, 176, 335, 535, 618
AclI	AACGTT	1 cut(s)	807
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	6 cut(s)	75, 268, 403, 508, 554, 914
AcuI	CTGAAG	1 cut(s)	771
AfaI	GTAC	1 cut(s)	859
AgsI	TTSAA	4 cut(s)	289, 612, 679, 838
AhlI	ACTAGT	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AluBI	AGCT	3 cut(s)	114, 411, 725
AluI	AGCT	3 cut(s)	114, 411, 725
Alw26I	GTCTC	2 cut(s)	253, 765
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	4 cut(s)	54, 84, 878, 972
ApeKI	GCWGC	3 cut(s)	620, 815, 818
ApoI	RAATTY	6 cut(s)	75, 268, 403, 508, 554, 914
AspLEI	GCGC	1 cut(s)	550
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	3 cut(s)	62, 596, 661
AxyI	CCTNAGG	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	124
BbsI	GAAGAC	2 cut(s)	627, 786
BbvI	GCAGC	3 cut(s)	607, 802, 805
BccI	CCATC	2 cut(s)	65, 272
BceAI	ACGGC	3 cut(s)	71, 99, 348
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	253, 765
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	819
BisI	GCNGC	3 cut(s)	621, 816, 819
BlsI	GCNGC	3 cut(s)	622, 817, 820
BmcAI	AGTACT	1 cut(s)	859
Bme1390I	CCNGG	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	204, 849
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	2 cut(s)	558, 814
BpiI	GAAGAC	2 cut(s)	627, 786
BpuEI	CTTGAG	1 cut(s)	848
BpuMI	CCSGG	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	657
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	882, 912
Bse1I	ACTGG	1 cut(s)	252
Bse21I	CCTNAGG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	657
BseAI	TCCGGA	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	4 cut(s)	283, 724, 912, 958
BseJI	GATNNNNATC	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	278, 866
BseNI	ACTGG	1 cut(s)	252
BseX3I	CGGCCG	1 cut(s)	84
BseXI	GCAGC	3 cut(s)	607, 802, 805
BseYI	CCCAGC	1 cut(s)	966
Bsh1236I	CGCG	2 cut(s)	15, 126
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	4 cut(s)	56, 86, 880, 974
BsiEI	CGRYCG	1 cut(s)	87
BsiSI	CCGG	3 cut(s)	117, 200, 299
BslFI	GGGAC	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	253, 765
BsmBI	CGTCTC	1 cut(s)	765
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	4 cut(s)	56, 86, 880, 974
Bso31I	GGTCTC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	4 cut(s)	22, 67, 449, 712
BspACI	CCGC	6 cut(s)	15, 100, 176, 335, 535, 618
BspANI	GGCC	4 cut(s)	56, 86, 880, 974
BspCNI	CTCAG	2 cut(s)	277, 867
BspEI	TCCGGA	1 cut(s)	199
BspFNI	CGCG	2 cut(s)	15, 126
BspLI	GGNNCC	2 cut(s)	204, 849
BspMAI	CTGCAG	1 cut(s)	823
BspTNI	GGTCTC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	4 cut(s)	22, 67, 449, 712
BssNAI	GTATAC	1 cut(s)	756
Bst1107I	GTATAC	1 cut(s)	756
Bst4CI	ACNGT	3 cut(s)	94, 242, 753
Bst6I	CTCTTC	1 cut(s)	960
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	3 cut(s)	207, 264, 875
BstF5I	GGATG	4 cut(s)	283, 724, 912, 958
BstFNI	CGCG	2 cut(s)	15, 126
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	4 cut(s)	25, 70, 452, 715
BstMAI	GTCTC	2 cut(s)	253, 765
BstMBI	GATC	4 cut(s)	22, 67, 449, 712
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	824
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	819
BstUI	CGCG	2 cut(s)	15, 126
BstV1I	GCAGC	3 cut(s)	607, 802, 805
BstV2I	GAAGAC	2 cut(s)	627, 786
BstXI	CCANNNNNNTGG	1 cut(s)	480
BstZ17I	GTATAC	1 cut(s)	756
BstZI	CGGCCG	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	4 cut(s)	56, 86, 880, 974
BtsCI	GGATG	4 cut(s)	283, 724, 912, 958
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	858
CviAII	CATG	2 cut(s)	355, 639
CviQI	GTAC	1 cut(s)	858
DdeI	CTNAG	3 cut(s)	207, 264, 875
DpnI	GATC	4 cut(s)	24, 69, 451, 714
DpnII	GATC	4 cut(s)	22, 67, 449, 712
EaeI	YGGCCR	1 cut(s)	84
EagI	CGGCCG	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	960
EarI	CTCTTC	1 cut(s)	960
EclXI	CGGCCG	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	974
Eco24I	GRGCYC	1 cut(s)	124
Eco31I	GGTCTC	1 cut(s)	253
Eco52I	CGGCCG	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	771
Eco81I	CCTNAGG	1 cut(s)	207
EcoRI	GAATTC	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	765
FaeI	CATG	2 cut(s)	358, 642
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	354, 638
FauI	CCCGC	1 cut(s)	8
FblI	GTMKAC	1 cut(s)	755
Fnu4HI	GCNGC	3 cut(s)	621, 816, 819
FokI	GGATG	4 cut(s)	290, 731, 919, 945
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	621, 816, 819
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	3 cut(s)	621, 816, 819
GsaI	CCCAGC	1 cut(s)	970
HaeIII	GGCC	4 cut(s)	56, 86, 880, 974
HapII	CCGG	3 cut(s)	117, 200, 299
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	2 cut(s)	358, 642
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HinfI	GANTC	4 cut(s)	133, 196, 653, 791
HpaII	CCGG	3 cut(s)	117, 200, 299
HphI	GGTGA	3 cut(s)	62, 596, 661
Hpy166II	GTNNAC	3 cut(s)	245, 604, 756
Hpy188I	TCNGA	7 cut(s)	67, 81, 267, 705, 790, 876, 913
Hpy188III	TCNNGA	7 cut(s)	71, 200, 214, 236, 289, 453, 716
Hpy8I	GTNNAC	3 cut(s)	245, 604, 756
Hpy99I	CGWCG	2 cut(s)	85, 445
HpyAV	CCTTC	6 cut(s)	220, 405, 511, 832, 838, 916
HpyCH4III	ACNGT	3 cut(s)	94, 242, 753
HpyCH4IV	ACGT	1 cut(s)	807
HpyCH4V	TGCA	4 cut(s)	153, 571, 821, 998
HpyF10VI	GCNNNNNNNGC	1 cut(s)	824
HpyF3I	CTNAG	3 cut(s)	207, 264, 875
HpySE526I	ACGT	1 cut(s)	807
Hsp92II	CATG	2 cut(s)	358, 642
HspAI	GCGC	1 cut(s)	548
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	22, 67, 449, 712
LmnI	GCTCC	2 cut(s)	119, 202
Lsp1109I	GCAGC	3 cut(s)	607, 802, 805
LweI	GCATC	2 cut(s)	558, 814
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	807
MaeIII	GTNAC	3 cut(s)	88, 328, 830
MalI	GATC	4 cut(s)	24, 69, 451, 714
MboI	GATC	4 cut(s)	22, 67, 449, 712
MboII	GAAGA	4 cut(s)	627, 786, 788, 947
MhlI	GDGCHC	1 cut(s)	124
MlyI	GAGTC	2 cut(s)	127, 800
MmeI	TCCRAC	3 cut(s)	104, 345, 718
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	5 cut(s)	96, 522, 540, 870, 1003
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	3 cut(s)	117, 200, 299
MspR9I	CCNGG	1 cut(s)	118
MvnI	CGCG	2 cut(s)	15, 126
MwoI	GCNNNNNNNGC	1 cut(s)	824
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	4 cut(s)	22, 67, 449, 712
NlaIII	CATG	2 cut(s)	358, 642
NlaIV	GGNNCC	2 cut(s)	204, 849
NmuCI	GTSAC	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	974
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	196, 653
PkrI	GCNGC	3 cut(s)	622, 817, 820
PleI	GAGTC	2 cut(s)	127, 799
PpsI	GAGTC	2 cut(s)	127, 799
Psp1406I	AACGTT	1 cut(s)	807
PspFI	CCCAGC	1 cut(s)	966
PspN4I	GGNNCC	2 cut(s)	204, 849
PstI	CTGCAG	1 cut(s)	823
RsaI	GTAC	1 cut(s)	859
RsaNI	GTAC	1 cut(s)	858
SaqAI	TTAA	5 cut(s)	96, 522, 540, 870, 1003
SatI	GCNGC	3 cut(s)	621, 816, 819
Sau3AI	GATC	4 cut(s)	22, 67, 449, 712
ScaI	AGTACT	1 cut(s)	859
SchI	GAGTC	2 cut(s)	127, 800
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	2 cut(s)	558, 814
SfcI	CTRYAG	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
SpeI	ACTAGT	1 cut(s)	344
SseBI	AGGCCT	1 cut(s)	974
SsiI	CCGC	6 cut(s)	15, 100, 176, 335, 535, 618
SspMI	CTAG	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	974
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	3 cut(s)	94, 242, 753
TaiI	ACGT	1 cut(s)	810
TaqI	TCGA	4 cut(s)	131, 184, 341, 440
TatI	WGTACW	1 cut(s)	857
TfiI	GAWTC	2 cut(s)	196, 653
Tru1I	TTAA	5 cut(s)	96, 522, 540, 870, 1003
Tru9I	TTAA	5 cut(s)	96, 522, 540, 870, 1003
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	3 cut(s)	620, 815, 818
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	6 cut(s)	183, 371, 371, 627, 735, 947
TspRI	CASTG	1 cut(s)	261
XapI	RAATTY	6 cut(s)	75, 268, 403, 508, 554, 914
XmiI	GTMKAC	1 cut(s)	755
XspI	CTAG	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.