Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

5754506 .. 5756415

Gene Structure 1910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG032300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGACTTCGGAAGACTGTGATGACAATTGCTCTAATACTTGCAAGACCATGTAAAAGAGGCTCTAGTGATATCGAAATTACAAAGAAGAGGAAGATAGATTCAGGTACAACTGCCCCATTGAAACCAAAGGGAGGCACTCTTGTTGTTTGTCCCCTGTCTTTGTTAAGCCAGTGGAAGGATGAGCTTGAAACTCATTCAGAGCCCAAAAGTAGTTCCATTTTTGTTCACTATGGTGGACACAGGACTGCTAACCCCAAGGCAATCTCAGTACATGATGTGGTCAAAACAACATATGGTGTCTTGGCTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

105

Amino Acids

11.31

Weight (kDa)

9.83

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	1 - 102	1.5e-12	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	109, 273
AfiI	CCNNNNNNNGG	2 cut(s)	134, 178
AgsI	TTSAA	2 cut(s)	124, 191
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	2 cut(s)	187, 314
AluI	AGCT	2 cut(s)	187, 314
ApeKI	GCWGC	2 cut(s)	308, 311
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	2 cut(s)	309, 312
BlsI	GCNGC	2 cut(s)	310, 313
BpiI	GAAGAC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 178
Bse1I	ACTGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	2 cut(s)	134, 178
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	295
BslFI	GGGAC	2 cut(s)	18, 138
BslI	CCNNNNNNNGG	2 cut(s)	134, 178
BsmFI	GGGAC	2 cut(s)	18, 138
Bsp1286I	GDGCHC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	108, 272
CviAII	CATG	2 cut(s)	51, 275
CviJI	RGCY	6 cut(s)	63, 171, 187, 205, 308, 314
CviKI_1	RGCY	6 cut(s)	63, 171, 187, 205, 308, 314
CviQI	GTAC	2 cut(s)	108, 272
DdeI	CTNAG	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	73
EcoRV	GATATC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	54, 278
FaiI	YATR	5 cut(s)	52, 234, 276, 295, 297
FaqI	GGGAC	2 cut(s)	18, 138
FatI	CATG	2 cut(s)	50, 274
FauNDI	CATATG	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	309, 312
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	2 cut(s)	309, 312
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	2 cut(s)	309, 312
Hin1II	CATG	2 cut(s)	54, 278
HinfI	GANTC	1 cut(s)	101
Hpy166II	GTNNAC	2 cut(s)	229, 239
Hpy188I	TCNGA	2 cut(s)	12, 202
Hpy8I	GTNNAC	2 cut(s)	229, 239
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	44, 311
HpyF3I	CTNAG	1 cut(s)	268
Hsp92II	CATG	2 cut(s)	54, 278
LpnPI	CCDG	4 cut(s)	90, 170, 185, 229
Lsp1109I	GCAGC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	66
MboII	GAAGA	3 cut(s)	25, 100, 106
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	2 cut(s)	27, 78
MnlI	CCTC	3 cut(s)	53, 84, 128
MseI	TTAA	2 cut(s)	167, 316
MslI	CAYNNNNRTG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	295
NlaIII	CATG	2 cut(s)	54, 278
OliI	CACNNNNGTG	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	310, 313
PstI	CTGCAG	1 cut(s)	313
RsaI	GTAC	2 cut(s)	109, 273
RsaNI	GTAC	2 cut(s)	108, 272
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	167, 316
SatI	GCNGC	2 cut(s)	309, 312
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	3 cut(s)	109, 189, 316
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	2 cut(s)	27, 78
SspMI	CTAG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	27, 78
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	2 cut(s)	167, 316
Tru9I	TTAA	2 cut(s)	167, 316
TscAI	CASTG	1 cut(s)	179
TseI	GCWGC	2 cut(s)	308, 311
TspRI	CASTG	1 cut(s)	179
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.