Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

5801306 .. 5821015

Gene Structure 19710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G002920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGATACAGAACACGTGGCTGATCGGCACAAAGTCCCATCAGTTATCGGTGAGCCCACCAATTCCGATCAAGAAATTCCGACGGCCGTGACGGTTAAGCGGACGAATACAAGCTCCGGGGCTCGCGTTTCGACTCTTATCAAGCAAGAGTGCATTGAGGATTTTGATGAAGTTGCGGAAAGTCGAAGCACTTTGATTCCGGAGCCTAAGGTCAAGAGGGTTCCGATGAAAAGAGCATTTTTTCAGCCAGTGGGCTTCATTTTTGGATCTCTTGGAGACCTCTATGAAGAGAAGAGAATTGGCTGTGTTAGGTTTGATGGAAAGTCCCGGACAGATAGGGACAGGGCATTGGTGAGTTCAGTAAGCACCAGGACAAACAGGATCCACCCTGGAATCCAGTGTGAGGAGGAAGCAAATATAATGAGAATTCTTCGAGTAGACGGAAGCAACTGCTTTATAAGATTTATTGTCAAGGACACAGTGGAGGAACGCATGCAACAGCTTCAGTCTAGAAAGCAGCAAATGTGTGTGGAAGTTGTCCCTGTTGAGAAAGATCGATCGGCCAGAATTGAGGACCTCAAAATGATTTCAGATGAATTATCCATATATATAGGACATAAGTTGGAAACAACTAGTCACACTATGGGGCTCTTTCTTTCTGTGGTATGCCAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

225

Amino Acids

25.54

Weight (kDa)

6.54

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AccI	GTMKAC	1 cut(s)	438
AccII	CGCG	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	2 cut(s)	100, 176
AclWI	GGATC	3 cut(s)	274, 376, 389
AcoI	YGGCCR	2 cut(s)	84, 561
AcsI	RAATTY	2 cut(s)	75, 426
AcuI	CTGAAG	1 cut(s)	488
AcvI	CACGTG	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	13
AhlI	ACTAGT	1 cut(s)	632
AjnI	CCWGG	2 cut(s)	368, 388
AluBI	AGCT	2 cut(s)	114, 502
AluI	AGCT	2 cut(s)	114, 502
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	3 cut(s)	274, 376, 389
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	2 cut(s)	84, 561
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	2 cut(s)	75, 426
AspS9I	GGNCC	1 cut(s)	574
AsuC2I	CCSGG	2 cut(s)	118, 328
AsuHPI	GGTGA	2 cut(s)	62, 364
AvaII	GGWCC	1 cut(s)	574
AxyI	CCTNAGG	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	381
BanII	GRGCYC	3 cut(s)	57, 124, 651
BbrPI	CACGTG	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	2 cut(s)	46, 311
BceAI	ACGGC	2 cut(s)	71, 99
BciT130I	CCWGG	2 cut(s)	370, 390
BcnI	CCSGG	2 cut(s)	118, 328
BcoDI	GTCTC	1 cut(s)	270
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	2 cut(s)	510, 633
BisI	GCNGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	519
Bme1390I	CCNGG	4 cut(s)	118, 328, 370, 390
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	3 cut(s)	204, 222, 383
BmrFI	CCNGG	4 cut(s)	118, 328, 370, 390
BpuMI	CCSGG	2 cut(s)	118, 328
Bsa29I	ATCGAT	1 cut(s)	556
BsaAI	YACGTR	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	117, 388
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	248, 397
Bse21I	CCTNAGG	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	370, 390
BseCI	ATCGAT	1 cut(s)	556
BseDI	CCNNGG	2 cut(s)	117, 388
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseNI	ACTGG	2 cut(s)	248, 397
BseRI	GAGGAG	1 cut(s)	419
BseX3I	CGGCCG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	529
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	2 cut(s)	87, 560
BshFI	GGCC	2 cut(s)	86, 563
BshVI	ATCGAT	1 cut(s)	556
BsiEI	CGRYCG	2 cut(s)	87, 560
BsiSI	CCGG	3 cut(s)	117, 200, 328
BslFI	GGGAC	4 cut(s)	20, 310, 353, 524
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	4 cut(s)	20, 310, 353, 524
BsnI	GGCC	2 cut(s)	86, 563
Bso31I	GGTCTC	1 cut(s)	270
Bsp1286I	GDGCHC	3 cut(s)	57, 124, 651
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	6 cut(s)	22, 67, 266, 381, 553, 557
BspACI	CCGC	2 cut(s)	100, 176
BspANI	GGCC	2 cut(s)	86, 563
BspDI	ATCGAT	1 cut(s)	556
BspEI	TCCGGA	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	204, 222, 383
BspPI	GGATC	3 cut(s)	274, 376, 389
BspTNI	GGTCTC	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	248, 397
BssECI	CCNNGG	2 cut(s)	117, 388
BssMI	GATC	6 cut(s)	22, 67, 266, 381, 553, 557
Bst2UI	CCWGG	2 cut(s)	370, 390
Bst4CI	ACNGT	2 cut(s)	94, 481
Bst6I	CTCTTC	2 cut(s)	282, 287
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	124, 494
BstDEI	CTNAG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	6 cut(s)	25, 70, 269, 384, 556, 560
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	6 cut(s)	22, 67, 266, 381, 553, 557
BstMCI	CGRYCG	2 cut(s)	87, 560
BstNI	CCWGG	2 cut(s)	370, 390
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	4 cut(s)	116, 326, 368, 388
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	2 cut(s)	266, 381
BstYI	RGATCY	2 cut(s)	266, 381
BstZI	CGGCCG	1 cut(s)	84
Bsu15I	ATCGAT	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	86, 563
BsuTUI	ATCGAT	1 cut(s)	556
BtsIMutI	CAGTG	3 cut(s)	255, 404, 486
Cac8I	GCNNGC	2 cut(s)	124, 494
Cfr13I	GGNCC	1 cut(s)	574
ClaI	ATCGAT	1 cut(s)	556
CviAII	CATG	1 cut(s)	493
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	6 cut(s)	24, 69, 268, 383, 555, 559
DpnII	GATC	6 cut(s)	22, 67, 266, 381, 553, 557
EaeI	YGGCCR	2 cut(s)	84, 561
EagI	CGGCCG	1 cut(s)	84
Eam1104I	CTCTTC	2 cut(s)	282, 287
EarI	CTCTTC	2 cut(s)	282, 287
EclXI	CGGCCG	1 cut(s)	84
Eco24I	GRGCYC	3 cut(s)	57, 124, 651
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	574
Eco52I	CGGCCG	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	488
Eco72I	CACGTG	1 cut(s)	16
Eco81I	CCTNAGG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	2 cut(s)	368, 388
EcoT38I	GRGCYC	3 cut(s)	57, 124, 651
FaeI	CATG	1 cut(s)	496
FaqI	GGGAC	4 cut(s)	20, 310, 353, 524
FatI	CATG	1 cut(s)	492
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	1 cut(s)	518
FriOI	GRGCYC	3 cut(s)	57, 124, 651
Fsp4HI	GCNGC	1 cut(s)	518
FspBI	CTAG	2 cut(s)	510, 633
GluI	GCNGC	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	86, 563
HapII	CCGG	3 cut(s)	117, 200, 328
Hin1II	CATG	1 cut(s)	496
HinfI	GANTC	3 cut(s)	133, 196, 393
HpaII	CCGG	3 cut(s)	117, 200, 328
HphI	GGTGA	2 cut(s)	62, 364
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	4 cut(s)	67, 81, 225, 592
Hpy188III	TCNNGA	4 cut(s)	71, 200, 214, 510
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	94, 481
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	153, 496
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	496
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	6 cut(s)	22, 67, 266, 381, 553, 557
LmnI	GCTCC	2 cut(s)	119, 202
Lsp1109I	GCAGC	1 cut(s)	529
MaeI	CTAG	2 cut(s)	510, 633
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	88, 635
MalI	GATC	6 cut(s)	24, 69, 268, 383, 555, 559
MboI	GATC	6 cut(s)	22, 67, 266, 381, 553, 557
MboII	GAAGA	3 cut(s)	299, 304, 422
MflI	RGATCY	2 cut(s)	266, 381
MhlI	GDGCHC	3 cut(s)	57, 124, 651
MluCI	AATT	6 cut(s)	61, 75, 297, 426, 567, 596
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	104, 603
MnlI	CCTC	8 cut(s)	151, 210, 290, 397, 400, 478, 565, 587
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	1 cut(s)	96
MspI	CCGG	3 cut(s)	117, 200, 328
MspR9I	CCNGG	4 cut(s)	118, 328, 370, 390
MvaI	CCWGG	2 cut(s)	370, 390
MvnI	CGCG	1 cut(s)	126
NciI	CCSGG	2 cut(s)	118, 328
NdeII	GATC	6 cut(s)	22, 67, 266, 381, 553, 557
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	3 cut(s)	204, 222, 383
NmuCI	GTSAC	2 cut(s)	88, 635
NspI	RCATGY	1 cut(s)	496
PaeI	GCATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	196, 393
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	519
Ple19I	CGATCG	1 cut(s)	560
PleI	GAGTC	1 cut(s)	127
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	574
PsiI	TTATAA	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	574
Psp6I	CCWGG	2 cut(s)	368, 388
PspCI	CACGTG	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	368, 388
PspN4I	GGNNCC	3 cut(s)	204, 222, 383
PspPI	GGNCC	1 cut(s)	574
PspPPI	RGGWCCY	1 cut(s)	574
PsuI	RGATCY	2 cut(s)	266, 381
PvuI	CGATCG	1 cut(s)	560
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	6 cut(s)	22, 67, 266, 381, 553, 557
Sau96I	GGNCC	1 cut(s)	574
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	4 cut(s)	118, 328, 370, 390
SduI	GDGCHC	3 cut(s)	57, 124, 651
SetI	ASST	7 cut(s)	18, 116, 213, 282, 314, 504, 579
SinI	GGWCC	1 cut(s)	574
SpeI	ACTAGT	1 cut(s)	632
SphI	GCATGC	1 cut(s)	496
Sse9I	AATT	6 cut(s)	61, 75, 297, 426, 567, 596
SsiI	CCGC	2 cut(s)	100, 176
SspMI	CTAG	2 cut(s)	510, 633
StyD4I	CCNGG	4 cut(s)	116, 326, 368, 388
TaaI	ACNGT	2 cut(s)	94, 481
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	4 cut(s)	131, 184, 433, 556
TasI	AATT	6 cut(s)	61, 75, 297, 426, 567, 596
TfiI	GAWTC	2 cut(s)	196, 393
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	3 cut(s)	255, 404, 486
TseFI	GTSAC	2 cut(s)	88, 635
TseI	GCWGC	1 cut(s)	517
Tsp45I	GTSAC	2 cut(s)	88, 635
TspDTI	ATGAA	5 cut(s)	183, 242, 247, 300, 609
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	3 cut(s)	255, 404, 486
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	2 cut(s)	75, 426
XbaI	TCTAGA	1 cut(s)	509
XceI	RCATGY	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	2 cut(s)	510, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.