Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

2798261 .. 2800408

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03131.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTTCCGATTGGATTGTCACCAAGAGGCAAAGGAGAAAGATGGAAGGCCCATACTCATTCTCCCTCCTGACATTGAAACCATCGAGTGTCATCAGTCTGAAACTGAACAAGAGTTCTATGATGCCCTTTTTAAGAGATCAAAAGATCAGTTTGACCAGATTGTGGCACAAGGCAAGGCTCTTCACAACTATGCAAATGCCCTCGGGCTACTGCTTTGTTTAAGGCAGTGTTGCAACCACCCATTTTTTGTTTCTAGTCAGCATGTTTCACAACTCTCTGCAGACTTGGACAAGCCTGCTAGTAGATTCCTTGAAATCGATCATGATTCTCCAAGTTCAGATCAGATTCTGCCCACCCAATCACATGAGGGAGAGCTTGTTAAGCGTATCTGTTGGGTTGGAAGCACAGTTTGTCCCGTTAAAGTTGACAAAAACTGGAAGGAGTCTTCTAAGGTTTCAAAGCTCTTTGACATCTTGGAACAAATTATTCGGTCAGGTTCTGATGAAAAGTGCATCATTTTCAGTCAGTGGCCTTCATTTTTGGATCTCTTGGAGATCTCTATGCAGAGAAGAAATATTGTGTTTCTGAGGATTGATGGCTATCTGTCAGAGGATAGGAGAAACAGGGATAAGAGAAATACAAATTTGAAGGGCTTCAGCCGTTACCACACCAAAGATAAACAGGTCTTGCTAATGTGTTTAAGAACTGATGCTGGTTACGATTTAAGTGCAGCATCTAATATCTTTTTAATGGATCCATGGTGGAATCCAGCTGAGGAGGAGAAAATACTAATGAGAATTACACGCAGTAGACAACATCCAACTGTTCGAAGATTTATTATCAAGGACACAGTAGAGGACCGTATGCAACAGCTTCAGTCTAGAAAGCAGCAAATGAGTCTGGAAGTTGTCCCTGATGAGAAAGACCTGTCGGCCAGATTTGAGGACCTCAAAATGATTTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

323

Amino Acids

37.7

Weight (kDa)

6.52

Isoelectric Point (pI)

69.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	156 - 270	4.8e-10	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	811
AclWI	GGATC	3 cut(s)	552, 749, 762
AcoI	YGGCCR	1 cut(s)	933
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	2 cut(s)	640, 860
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	4 cut(s)	77, 314, 459, 649
AluBI	AGCT	4 cut(s)	376, 463, 773, 874
AluI	AGCT	4 cut(s)	376, 463, 773, 874
AlwI	GGATC	3 cut(s)	552, 749, 762
AlwNI	CAGNNNCTG	2 cut(s)	349, 500
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	3 cut(s)	47, 530, 933
ApeKI	GCWGC	2 cut(s)	731, 889
ApoI	RAATTY	1 cut(s)	643
Asp700I	GAANNNNTTC	1 cut(s)	653
AspS9I	GGNCC	3 cut(s)	48, 859, 946
AsuHPI	GGTGA	1 cut(s)	11
AsuII	TTCGAA	1 cut(s)	829
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	859, 946
BamHI	GGATCC	1 cut(s)	754
BbsI	GAAGAC	1 cut(s)	438
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	2 cut(s)	743, 901
BccI	CCATC	3 cut(s)	35, 89, 590
BceAI	ACGGC	1 cut(s)	645
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BfaI	CTAG	3 cut(s)	255, 300, 882
BfmI	CTRYAG	1 cut(s)	279
BglII	AGATCT	1 cut(s)	555
BisI	GCNGC	2 cut(s)	732, 890
BlsI	GCNGC	2 cut(s)	733, 891
Bme18I	GGWCC	2 cut(s)	859, 946
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	3 cut(s)	48, 859, 946
BmiI	GGNNCC	1 cut(s)	756
BmsI	GCATC	4 cut(s)	112, 522, 700, 743
BpiI	GAAGAC	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	774
Bpu14I	TTCGAA	1 cut(s)	829
Bsa29I	ATCGAT	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	202, 758
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 363, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	600
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	202, 758
BseGI	GGATG	1 cut(s)	817
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	578, 765
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	2 cut(s)	791, 794
BseXI	GCAGC	2 cut(s)	743, 901
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	3 cut(s)	49, 532, 935
BshVI	ATCGAT	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	203
BslFI	GGGAC	2 cut(s)	399, 896
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	399, 896
BsnI	GGCC	3 cut(s)	49, 532, 935
BsoBI	CYCGRG	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	829
Bsp143I	GATC	7 cut(s)	137, 145, 319, 340, 544, 555, 754
Bsp19I	CCATGG	1 cut(s)	758
BspANI	GGCC	3 cut(s)	49, 532, 935
BspCNI	CTCAG	2 cut(s)	579, 766
BspDI	ATCGAT	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	756
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	3 cut(s)	552, 749, 762
BspQI	GCTCTTC	1 cut(s)	186
BspT104I	TTCGAA	1 cut(s)	829
BsrI	ACTGG	1 cut(s)	440
BssECI	CCNNGG	2 cut(s)	202, 758
BssMI	GATC	7 cut(s)	137, 145, 319, 340, 544, 555, 754
BssT1I	CCWWGG	1 cut(s)	758
Bst4CI	ACNGT	4 cut(s)	409, 826, 853, 863
Bst6I	CTCTTC	1 cut(s)	186
BstBI	TTCGAA	1 cut(s)	829
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	3 cut(s)	450, 587, 774
BstDSI	CCRYGG	1 cut(s)	758
BstF5I	GGATG	1 cut(s)	817
BstKTI	GATC	7 cut(s)	140, 148, 322, 343, 547, 558, 757
BstMBI	GATC	7 cut(s)	137, 145, 319, 340, 544, 555, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNSI	RCATGY	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	743, 901
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	3 cut(s)	544, 555, 754
BstYI	RGATCY	3 cut(s)	544, 555, 754
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	49, 532, 935
BsuTUI	ATCGAT	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	758
BtsCI	GGATG	1 cut(s)	817
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	233, 533
Cac8I	GCNNGC	1 cut(s)	297
CaiI	CAGNNNCTG	2 cut(s)	349, 500
CciI	TCATGA	1 cut(s)	322
Cfr13I	GGNCC	3 cut(s)	48, 859, 946
ClaI	ATCGAT	1 cut(s)	318
CviAII	CATG	4 cut(s)	263, 323, 365, 759
DdeI	CTNAG	3 cut(s)	450, 587, 774
DpnI	GATC	7 cut(s)	139, 147, 321, 342, 546, 557, 756
DpnII	GATC	7 cut(s)	137, 145, 319, 340, 544, 555, 754
EaeI	YGGCCR	1 cut(s)	933
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	758
Eco47I	GGWCC	2 cut(s)	859, 946
Eco57I	CTGAAG	2 cut(s)	640, 860
Eco88I	CYCGRG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	946
EcoT14I	CCWWGG	1 cut(s)	758
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	4 cut(s)	266, 326, 368, 762
FaiI	YATR	9 cut(s)	53, 120, 192, 264, 324, 366, 563, 760, 866
FaqI	GGGAC	2 cut(s)	399, 896
FatI	CATG	4 cut(s)	262, 322, 364, 758
FblI	GTMKAC	1 cut(s)	811
Fnu4HI	GCNGC	2 cut(s)	732, 890
FokI	GGATG	1 cut(s)	804
Fsp4HI	GCNGC	2 cut(s)	732, 890
FspBI	CTAG	3 cut(s)	255, 300, 882
GluI	GCNGC	2 cut(s)	732, 890
HaeIII	GGCC	3 cut(s)	49, 532, 935
Hin1II	CATG	4 cut(s)	266, 326, 368, 762
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	6 cut(s)	306, 326, 346, 443, 766, 898
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	2 cut(s)	427, 812
Hpy188I	TCNGA	8 cut(s)	8, 100, 340, 345, 502, 588, 610, 965
Hpy188III	TCNNGA	4 cut(s)	68, 323, 882, 902
Hpy8I	GTNNAC	2 cut(s)	427, 812
HpyAV	CCTTC	4 cut(s)	39, 433, 543, 643
HpyCH4III	ACNGT	4 cut(s)	409, 826, 853, 863
HpyCH4V	TGCA	7 cut(s)	194, 234, 281, 513, 565, 731, 868
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	3 cut(s)	450, 587, 774
Hsp92II	CATG	4 cut(s)	266, 326, 368, 762
Kzo9I	GATC	7 cut(s)	137, 145, 319, 340, 544, 555, 754
LguI	GCTCTTC	1 cut(s)	186
Lsp1109I	GCAGC	2 cut(s)	743, 901
LweI	GCATC	4 cut(s)	112, 522, 700, 743
MaeI	CTAG	3 cut(s)	255, 300, 882
MaeIII	GTNAC	3 cut(s)	17, 662, 716
MalI	GATC	7 cut(s)	139, 147, 321, 342, 546, 557, 756
MboI	GATC	7 cut(s)	137, 145, 319, 340, 544, 555, 754
MboII	GAAGA	4 cut(s)	173, 438, 582, 843
MflI	RGATCY	3 cut(s)	544, 555, 754
MluCI	AATT	3 cut(s)	483, 643, 798
MlyI	GAGTC	2 cut(s)	452, 907
MmeI	TCCRAC	2 cut(s)	379, 845
MroXI	GAANNNNTTC	1 cut(s)	653
MseI	TTAA	7 cut(s)	132, 221, 381, 420, 701, 725, 749
MslI	CAYNNNNRTG	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	773
MwoI	GCNNNNNNNGC	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	758
NdeII	GATC	7 cut(s)	137, 145, 319, 340, 544, 555, 754
NlaIII	CATG	4 cut(s)	266, 326, 368, 762
NlaIV	GGNNCC	1 cut(s)	756
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	829
PagI	TCATGA	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	4 cut(s)	306, 326, 346, 766
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	733, 891
PleI	GAGTC	2 cut(s)	451, 906
PpsI	GAGTC	2 cut(s)	451, 906
PpuMI	RGGWCCY	1 cut(s)	946
Psp5II	RGGWCCY	1 cut(s)	946
PspN4I	GGNNCC	1 cut(s)	756
PspPI	GGNCC	3 cut(s)	48, 859, 946
PspPPI	RGGWCCY	1 cut(s)	946
PstI	CTGCAG	1 cut(s)	283
PstNI	CAGNNNCTG	2 cut(s)	349, 500
PsuI	RGATCY	3 cut(s)	544, 555, 754
PvuII	CAGCTG	1 cut(s)	773
RseI	CAYNNNNRTG	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	7 cut(s)	132, 221, 381, 420, 701, 725, 749
SatI	GCNGC	2 cut(s)	732, 890
Sau3AI	GATC	7 cut(s)	137, 145, 319, 340, 544, 555, 754
Sau96I	GGNCC	3 cut(s)	48, 859, 946
SchI	GAGTC	2 cut(s)	452, 907
SetI	ASST	9 cut(s)	378, 456, 465, 499, 687, 775, 876, 930, 951
SfaNI	GCATC	4 cut(s)	112, 522, 700, 743
SfcI	CTRYAG	1 cut(s)	279
SfuI	TTCGAA	1 cut(s)	829
SinI	GGWCC	2 cut(s)	859, 946
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	3 cut(s)	483, 643, 798
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	3 cut(s)	255, 300, 882
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	4 cut(s)	409, 826, 853, 863
TaqI	TCGA	3 cut(s)	84, 318, 829
TaqII	GACCGA	1 cut(s)	480
TasI	AATT	3 cut(s)	483, 643, 798
TfiI	GAWTC	4 cut(s)	306, 326, 346, 766
Tru1I	TTAA	7 cut(s)	132, 221, 381, 420, 701, 725, 749
Tru9I	TTAA	7 cut(s)	132, 221, 381, 420, 701, 725, 749
TscAI	CASTG	2 cut(s)	233, 533
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	2 cut(s)	731, 889
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	519, 525
TspRI	CASTG	2 cut(s)	233, 533
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	859, 946
XapI	RAATTY	1 cut(s)	643
XbaI	TCTAGA	1 cut(s)	881
XceI	RCATGY	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	811
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	3 cut(s)	255, 300, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.