Rw5G048340

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
84084854 .. 84086683
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G048340.1

Sequence Viewer

Length: 378 bp
ATGTGCATGAAATTGTTGGACAATGAGATTGTTCATCTCTCTTTTCCTTCCTCAAATTCCAGCTACAAAACCCAGTGGATTGTTCGTTTCTCGACGAAAAGATCAGGAGAGGAGGGCTTCTTCAATCTATGTAAACATTTTCACAGGGGAGGCAACCACAAAATTATTCCAACTGCAATGCTGATGGCAAGAGGAGGAATCCTAGCAGATGCAATGGGACTTTGGAAGACTGTGATGACAATTGCTCTAATACTTGCAAGACCAGTCAGGATGAGCTTGAAACTCATTCAGAGCCCGAAAGTAGTTCTATTTTTGTTCACTATGGTGGACACAGAACTGCTAACCCCAAGGCAATCTCGGTACATGATGTGGTCATGA

Protein Analysis

125

Amino Acids

14.35

Weight (kDa)

10.18

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 55
AfaI GTAC 1 cut(s) 362
AgsI TTSAA 2 cut(s) 124, 280
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 2 cut(s) 63, 276
AluI AGCT 2 cut(s) 63, 276
ApoI RAATTY 1 cut(s) 55
BanII GRGCYC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 233
BccI CCATC 1 cut(s) 178
BfaI CTAG 1 cut(s) 203
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 347
Bse1I ACTGG 2 cut(s) 73, 263
Bse3DI GCAATG 2 cut(s) 183, 219
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 1 cut(s) 276
BseMI GCAATG 2 cut(s) 183, 219
BseNI ACTGG 2 cut(s) 73, 263
BseRI GAGGAG 2 cut(s) 125, 207
BslFI GGGAC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 101
BspHI TCATGA 1 cut(s) 374
BsrDI GCAATG 2 cut(s) 183, 219
BsrI ACTGG 2 cut(s) 73, 263
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 232
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 1 cut(s) 104
BstMBI GATC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 80
CciI TCATGA 1 cut(s) 374
Csp6I GTAC 1 cut(s) 361
CviAII CATG 3 cut(s) 7, 364, 375
CviJI RGCY 4 cut(s) 63, 117, 276, 294
CviKI_1 RGCY 4 cut(s) 63, 117, 276, 294
CviQI GTAC 1 cut(s) 361
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 347
Eco24I GRGCYC 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 3 cut(s) 10, 367, 378
FaiI YATR 5 cut(s) 8, 130, 323, 365, 376
FaqI GGGAC 1 cut(s) 231
FatI CATG 3 cut(s) 6, 363, 374
FokI GGATG 1 cut(s) 283
FriOI GRGCYC 1 cut(s) 296
FspBI CTAG 1 cut(s) 203
Hin1II CATG 3 cut(s) 10, 367, 378
HinfI GANTC 1 cut(s) 198
Hpy166II GTNNAC 3 cut(s) 134, 318, 328
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 4 cut(s) 91, 105, 268, 375
Hpy8I GTNNAC 3 cut(s) 134, 318, 328
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 4 cut(s) 6, 176, 212, 257
Hsp92II CATG 3 cut(s) 10, 367, 378
Kzo9I GATC 1 cut(s) 101
LpnPI CCDG 6 cut(s) 73, 86, 90, 130, 253, 276
LweI GCATC 1 cut(s) 199
MaeI CTAG 1 cut(s) 203
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 2 cut(s) 112, 238
MfeI CAATTG 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 4 cut(s) 11, 55, 162, 240
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 6 cut(s) 61, 103, 106, 143, 185, 188
MslI CAYNNNNRTG 1 cut(s) 323
MunI CAATTG 1 cut(s) 240
NdeII GATC 1 cut(s) 101
NlaIII CATG 3 cut(s) 10, 367, 378
OliI CACNNNNGTG 1 cut(s) 323
PagI TCATGA 1 cut(s) 374
PfeI GAWTC 1 cut(s) 198
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 323
Sau3AI GATC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 296
SetI ASST 2 cut(s) 65, 278
SfaNI GCATC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 4 cut(s) 11, 55, 162, 240
SspMI CTAG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 92
TasI AATT 4 cut(s) 11, 55, 162, 240
TfiI GAWTC 1 cut(s) 198
TscAI CASTG 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 23, 23
TspRI CASTG 1 cut(s) 80
XapI RAATTY 1 cut(s) 55
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.