SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UBA_RAD5A | PF24559 | 246 - 286 | 3.1e-12 | DNA repair protein RAD5A UBA domain |
| HIRAN | PF08797 | 345 - 434 | 2.1e-13 | HIRAN domain |
| SNF2-rel_dom | PF00176 | 564 - 924 | 1.8e-72 | SNF2-related domain |
| DEAD | PF00270 | 632 - 797 | 1.4e-06 | DEAD/DEAH box helicase |
| zf-C3HC4_3 | PF13920 | 985 - 1032 | 2.9e-08 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_2 | PF13639 | 987 - 1028 | 4.7e-06 | Ring finger domain |
| zf-C3HC4_2 | PF13923 | 987 - 1027 | 8.5e-06 | Zinc finger, C3HC4 type (RING finger) |
| zf-C3HC4_4 | PF15227 | 988 - 1018 | 9.6e-07 | zinc finger of C3HC4-type, RING |
| zf-C3HC4 | PF00097 | 988 - 1027 | 1e-07 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_UBOX | PF13445 | 988 - 1025 | 6.5e-08 | RING-type zinc-finger |
| Helicase_C | PF00271 | 1063 - 1127 | 2.6e-08 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3422 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3062 |
| AccBSI | CCGCTC | 1 cut(s) | 1012 |
| AccI | GTMKAC | 1 cut(s) | 1080 |
| AccII | CGCG | 1 cut(s) | 144 |
| AciI | CCGC | 8 cut(s) | 277, 344, 491, 819, 1012, 1025, 1625, 3130 |
| AcoI | YGGCCR | 2 cut(s) | 119, 715 |
| AcsI | RAATTY | 6 cut(s) | 21, 33, 756, 788, 1117, 1850 |
| AcuI | CTGAAG | 3 cut(s) | 285, 539, 729 |
| AdeI | CACNNNGTG | 1 cut(s) | 3008 |
| AfaI | GTAC | 3 cut(s) | 366, 1221, 2172 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 84, 607, 1068, 1710, 2033, 2077, 2655, 3062, 3136 |
| AhlI | ACTAGT | 1 cut(s) | 2150 |
| AleI | CACNNNNGTG | 1 cut(s) | 2133 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2137, 2169 |
| Alw21I | GWGCWC | 4 cut(s) | 245, 808, 2317, 3013 |
| Alw26I | GTCTC | 4 cut(s) | 163, 819, 2512, 3362 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2627, 3221 |
| Ama87I | CYCGRG | 2 cut(s) | 770, 3040 |
| ApeKI | GCWGC | 5 cut(s) | 836, 1259, 2207, 2210, 3390 |
| ApoI | RAATTY | 6 cut(s) | 21, 33, 756, 788, 1117, 1850 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3244, 3276 |
| AseI | ATTAAT | 1 cut(s) | 2456 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 150, 552, 1500, 1549, 1826, 3359 |
| AspLEI | GCGC | 3 cut(s) | 144, 334, 1051 |
| AspS9I | GGNCC | 3 cut(s) | 2304, 3065, 3199 |
| AsuC2I | CCSGG | 1 cut(s) | 85 |
| AsuHPI | GGTGA | 8 cut(s) | 424, 937, 1310, 1324, 2320, 2492, 2825, 2960 |
| AsuNHI | GCTAGC | 1 cut(s) | 2867 |
| AvaI | CYCGRG | 2 cut(s) | 770, 3040 |
| AvaII | GGWCC | 3 cut(s) | 2304, 3065, 3199 |
| BanII | GRGCYC | 2 cut(s) | 91, 1659 |
| BauI | CACGAG | 1 cut(s) | 3060 |
| BbsI | GAAGAC | 6 cut(s) | 1341, 1475, 1593, 1919, 3026, 3058 |
| Bbv12I | GWGCWC | 4 cut(s) | 245, 808, 2317, 3013 |
| BbvI | GCAGC | 5 cut(s) | 848, 1246, 2194, 2222, 3402 |
| BciVI | GTATCC | 1 cut(s) | 2948 |
| BclI | TGATCA | 2 cut(s) | 105, 729 |
| BcnI | CCSGG | 1 cut(s) | 85 |
| BcoDI | GTCTC | 4 cut(s) | 163, 819, 2512, 3362 |
| BcuI | ACTAGT | 1 cut(s) | 2150 |
| BfaI | CTAG | 5 cut(s) | 1361, 1889, 1940, 2151, 2868 |
| BfmI | CTRYAG | 3 cut(s) | 1005, 2208, 2395 |
| BfuI | GTATCC | 1 cut(s) | 2948 |
| BglII | AGATCT | 1 cut(s) | 2389 |
| BisI | GCNGC | 8 cut(s) | 278, 837, 1260, 1626, 2208, 2211, 3130, 3391 |
| BlpI | GCTNAGC | 1 cut(s) | 281 |
| BlsI | GCNGC | 8 cut(s) | 279, 838, 1261, 1627, 2209, 2212, 3131, 3392 |
| Bme18I | GGWCC | 3 cut(s) | 2304, 3065, 3199 |
| BmeT110I | CYCGRG | 2 cut(s) | 770, 3040 |
| BmgT120I | GGNCC | 3 cut(s) | 2304, 3065, 3199 |
| BmiI | GGNNCC | 9 cut(s) | 195, 213, 309, 465, 495, 612, 1552, 1656, 2306 |
| BmrI | ACTGGG | 1 cut(s) | 2446 |
| BmsI | GCATC | 6 cut(s) | 264, 1272, 1354, 1885, 2614, 2866 |
| BmtI | GCTAGC | 1 cut(s) | 2871 |
| BmuI | ACTGGG | 1 cut(s) | 2446 |
| BpiI | GAAGAC | 6 cut(s) | 1341, 1475, 1593, 1919, 3026, 3058 |
| BpmI | CTGGAG | 1 cut(s) | 1440 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2316 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 281 |
| BpuEI | CTTGAG | 1 cut(s) | 1251 |
| BpuMI | CCSGG | 1 cut(s) | 85 |
| Bsa29I | ATCGAT | 3 cut(s) | 255, 272, 1380 |
| BsaBI | GATNNNNATC | 1 cut(s) | 227 |
| BsaI | GGTCTC | 3 cut(s) | 819, 2512, 3362 |
| BsaJI | CCNNGG | 9 cut(s) | 27, 84, 204, 246, 319, 1660, 2157, 2308, 2426 |
| BsaWI | WCCGGW | 1 cut(s) | 2360 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1023, 1053, 1689, 1719, 2350, 2380, 2565, 2595 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 84, 607, 1068, 1710, 2033, 2077, 2655, 3062, 3136 |
| Bse1I | ACTGG | 5 cut(s) | 596, 2071, 2261, 2441, 2671 |
| Bse3DI | GCAATG | 2 cut(s) | 1523, 2341 |
| Bse8I | GATNNNNATC | 1 cut(s) | 227 |
| BseCI | ATCGAT | 3 cut(s) | 255, 272, 1380 |
| BseDI | CCNNGG | 9 cut(s) | 27, 84, 204, 246, 319, 1660, 2157, 2308, 2426 |
| BseJI | GATNNNNATC | 1 cut(s) | 227 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 84, 607, 1068, 1710, 2033, 2077, 2655, 3062, 3136 |
| BseMI | GCAATG | 2 cut(s) | 1523, 2341 |
| BseMII | CTCAG | 9 cut(s) | 372, 420, 561, 1437, 1587, 1684, 2181, 2330, 2486 |
| BseNI | ACTGG | 5 cut(s) | 596, 2071, 2261, 2441, 2671 |
| BseRI | GAGGAG | 8 cut(s) | 143, 224, 263, 446, 455, 1391, 1661, 1893 |
| BseXI | GCAGC | 5 cut(s) | 848, 1246, 2194, 2222, 3402 |
| BseYI | CCCAGC | 3 cut(s) | 1773, 2903, 3045 |
| BsgI | GTGCAG | 2 cut(s) | 1245, 1515 |
| Bsh1236I | CGCG | 1 cut(s) | 144 |
| Bsh1285I | CGRYCG | 3 cut(s) | 102, 764, 1180 |
| BshVI | ATCGAT | 3 cut(s) | 255, 272, 1380 |
| BsiEI | CGRYCG | 3 cut(s) | 102, 764, 1180 |
| BsiHKAI | GWGCWC | 4 cut(s) | 245, 808, 2317, 3013 |
| BsiHKCI | CYCGRG | 2 cut(s) | 770, 3040 |
| BsiSI | CCGG | 3 cut(s) | 84, 122, 2361 |
| BslFI | GGGAC | 8 cut(s) | 923, 1010, 1048, 1917, 2037, 2139, 2885, 2949 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 84, 607, 1068, 1710, 2033, 2077, 2655, 3062, 3136 |
| BsmAI | GTCTC | 4 cut(s) | 163, 819, 2512, 3362 |
| BsmBI | CGTCTC | 1 cut(s) | 163 |
| BsmFI | GGGAC | 8 cut(s) | 923, 1010, 1048, 1917, 2037, 2139, 2885, 2949 |
| BsmI | GAATGC | 2 cut(s) | 821, 838 |
| Bso31I | GGTCTC | 3 cut(s) | 819, 2512, 3362 |
| BsoBI | CYCGRG | 2 cut(s) | 770, 3040 |
| Bsp1286I | GDGCHC | 6 cut(s) | 91, 245, 808, 1659, 2317, 3013 |
| Bsp1407I | TGTACA | 1 cut(s) | 1219 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 281 |
| Bsp19I | CCATGG | 2 cut(s) | 27, 2426 |
| BspACI | CCGC | 8 cut(s) | 277, 344, 491, 819, 1012, 1025, 1625, 3130 |
| BspCNI | CTCAG | 9 cut(s) | 373, 421, 562, 1438, 1588, 1683, 2180, 2329, 2487 |
| BspDI | ATCGAT | 3 cut(s) | 255, 272, 1380 |
| BspFNI | CGCG | 1 cut(s) | 144 |
| BspHI | TCATGA | 2 cut(s) | 643, 2775 |
| BspLI | GGNNCC | 9 cut(s) | 195, 213, 309, 465, 495, 612, 1552, 1656, 2306 |
| BspMAI | CTGCAG | 1 cut(s) | 2212 |
| BspOI | GCTAGC | 1 cut(s) | 2871 |
| BspTNI | GGTCTC | 3 cut(s) | 819, 2512, 3362 |
| BsrBI | CCGCTC | 1 cut(s) | 1012 |
| BsrDI | GCAATG | 2 cut(s) | 1523, 2341 |
| BsrGI | TGTACA | 1 cut(s) | 1219 |
| BsrI | ACTGG | 5 cut(s) | 596, 2071, 2261, 2441, 2671 |
| BssECI | CCNNGG | 9 cut(s) | 27, 84, 204, 246, 319, 1660, 2157, 2308, 2426 |
| BssSI | CACGAG | 1 cut(s) | 3060 |
| BssT1I | CCWWGG | 4 cut(s) | 27, 2157, 2308, 2426 |
| Bst2BI | CACGAG | 1 cut(s) | 3060 |
| Bst4CI | ACNGT | 7 cut(s) | 103, 947, 1039, 1251, 1787, 1918, 2619 |
| Bst6I | CTCTTC | 8 cut(s) | 231, 410, 735, 1951, 1982, 2916, 3281, 3286 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1529 |
| BstAUI | TGTACA | 1 cut(s) | 1219 |
| BstC8I | GCNNGC | 5 cut(s) | 1023, 1530, 1780, 2847, 2869 |
| BstDSI | CCRYGG | 2 cut(s) | 27, 2426 |
| BstFNI | CGCG | 1 cut(s) | 144 |
| BstHHI | GCGC | 3 cut(s) | 144, 334, 1051 |
| BstMAI | GTCTC | 4 cut(s) | 163, 819, 2512, 3362 |
| BstMCI | CGRYCG | 3 cut(s) | 102, 764, 1180 |
| BstNSI | RCATGY | 1 cut(s) | 2420 |
| BstSFI | CTRYAG | 3 cut(s) | 1005, 2208, 2395 |
| BstUI | CGCG | 1 cut(s) | 144 |
| BstV1I | GCAGC | 5 cut(s) | 848, 1246, 2194, 2222, 3402 |
| BstV2I | GAAGAC | 6 cut(s) | 1341, 1475, 1593, 1919, 3026, 3058 |
| BstX2I | RGATCY | 6 cut(s) | 377, 425, 524, 2389, 3265, 3276 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2974 |
| BstYI | RGATCY | 6 cut(s) | 377, 425, 524, 2389, 3265, 3276 |
| Bsu15I | ATCGAT | 3 cut(s) | 255, 272, 1380 |
| BsuI | GTATCC | 1 cut(s) | 2948 |
| BsuTUI | ATCGAT | 3 cut(s) | 255, 272, 1380 |
| BtgI | CCRYGG | 2 cut(s) | 27, 2426 |
| BtgZI | GCGATG | 3 cut(s) | 311, 1913, 2322 |
| BtsI | GCAGTG | 1 cut(s) | 2756 |
| BtsIMutI | CAGTG | 4 cut(s) | 2078, 2522, 2756, 3254 |
| Cac8I | GCNNGC | 5 cut(s) | 1023, 1530, 1780, 2847, 2869 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2627, 3221 |
| CciI | TCATGA | 2 cut(s) | 643, 2775 |
| CfoI | GCGC | 3 cut(s) | 144, 334, 1051 |
| Cfr13I | GGNCC | 3 cut(s) | 2304, 3065, 3199 |
| ClaI | ATCGAT | 3 cut(s) | 255, 272, 1380 |
| CsiI | ACCWGGT | 1 cut(s) | 1948 |
| Csp6I | GTAC | 3 cut(s) | 365, 1220, 2171 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 966, 1001 |
| CviQI | GTAC | 3 cut(s) | 365, 1220, 2171 |
| DraIII | CACNNNGTG | 1 cut(s) | 3008 |
| EaeI | YGGCCR | 2 cut(s) | 119, 715 |
| Eam1104I | CTCTTC | 8 cut(s) | 231, 410, 735, 1951, 1982, 2916, 3281, 3286 |
| EarI | CTCTTC | 8 cut(s) | 231, 410, 735, 1951, 1982, 2916, 3281, 3286 |
| Eco130I | CCWWGG | 4 cut(s) | 27, 2157, 2308, 2426 |
| Eco147I | AGGCCT | 1 cut(s) | 2467 |
| Eco24I | GRGCYC | 2 cut(s) | 91, 1659 |
| Eco31I | GGTCTC | 3 cut(s) | 819, 2512, 3362 |
| Eco47I | GGWCC | 3 cut(s) | 2304, 3065, 3199 |
| Eco57I | CTGAAG | 3 cut(s) | 285, 539, 729 |
| Eco88I | CYCGRG | 2 cut(s) | 770, 3040 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2304 |
| EcoRI | GAATTC | 1 cut(s) | 33 |
| EcoT14I | CCWWGG | 4 cut(s) | 27, 2157, 2308, 2426 |
| EcoT38I | GRGCYC | 2 cut(s) | 91, 1659 |
| ErhI | CCWWGG | 4 cut(s) | 27, 2157, 2308, 2426 |
| Esp3I | CGTCTC | 1 cut(s) | 163 |
| FaqI | GGGAC | 8 cut(s) | 923, 1010, 1048, 1917, 2037, 2139, 2885, 2949 |
| FauI | CCCGC | 1 cut(s) | 1005 |
| FauNDI | CATATG | 2 cut(s) | 2194, 2969 |
| FbaI | TGATCA | 2 cut(s) | 105, 729 |
| FblI | GTMKAC | 1 cut(s) | 1080 |
| Fnu4HI | GCNGC | 8 cut(s) | 278, 837, 1260, 1626, 2208, 2211, 3130, 3391 |
| FriOI | GRGCYC | 2 cut(s) | 91, 1659 |
| Fsp4HI | GCNGC | 8 cut(s) | 278, 837, 1260, 1626, 2208, 2211, 3130, 3391 |
| FspBI | CTAG | 5 cut(s) | 1361, 1889, 1940, 2151, 2868 |
| GlaI | GCGC | 3 cut(s) | 143, 333, 1050 |
| GluI | GCNGC | 8 cut(s) | 278, 837, 1260, 1626, 2208, 2211, 3130, 3391 |
| GsaI | CCCAGC | 3 cut(s) | 1777, 2907, 3049 |
| GsuI | CTGGAG | 1 cut(s) | 1440 |
| HapII | CCGG | 3 cut(s) | 84, 122, 2361 |
| HhaI | GCGC | 3 cut(s) | 144, 334, 1051 |
| Hin6I | GCGC | 3 cut(s) | 142, 332, 1049 |
| HinP1I | GCGC | 3 cut(s) | 142, 332, 1049 |
| HincII | GTYRAC | 3 cut(s) | 1096, 1342, 2254 |
| HindII | GTYRAC | 3 cut(s) | 1096, 1342, 2254 |
| HindIII | AAGCTT | 3 cut(s) | 149, 665, 2843 |
| HpaI | GTTAAC | 1 cut(s) | 1096 |
| HpaII | CCGG | 3 cut(s) | 84, 122, 2361 |
| HphI | GGTGA | 8 cut(s) | 424, 937, 1310, 1324, 2320, 2492, 2825, 2960 |
| Hpy99I | CGWCG | 4 cut(s) | 181, 184, 625, 910 |
| HpyCH4III | ACNGT | 7 cut(s) | 103, 947, 1039, 1251, 1787, 1918, 2619 |
| HpyCH4IV | ACGT | 3 cut(s) | 623, 1480, 1498 |
| HpySE526I | ACGT | 3 cut(s) | 623, 1480, 1498 |
| HspAI | GCGC | 3 cut(s) | 142, 332, 1049 |
| Ksp22I | TGATCA | 2 cut(s) | 105, 729 |
| KspAI | GTTAAC | 1 cut(s) | 1096 |
| LmnI | GCTCC | 5 cut(s) | 211, 248, 610, 1519, 1654 |
| Lsp1109I | GCAGC | 5 cut(s) | 848, 1246, 2194, 2222, 3402 |
| LweI | GCATC | 6 cut(s) | 264, 1272, 1354, 1885, 2614, 2866 |
| MabI | ACCWGGT | 1 cut(s) | 1948 |
| MaeI | CTAG | 5 cut(s) | 1361, 1889, 1940, 2151, 2868 |
| MaeII | ACGT | 3 cut(s) | 623, 1480, 1498 |
| MaeIII | GTNAC | 1 cut(s) | 1042 |
| MbiI | CCGCTC | 1 cut(s) | 1012 |
| MfeI | CAATTG | 1 cut(s) | 1926 |
| MflI | RGATCY | 6 cut(s) | 377, 425, 524, 2389, 3265, 3276 |
| MhlI | GDGCHC | 6 cut(s) | 91, 245, 808, 1659, 2317, 3013 |
| MlyI | GAGTC | 4 cut(s) | 140, 569, 1607, 2788 |
| MmeI | TCCRAC | 7 cut(s) | 355, 1009, 1453, 1880, 2612, 2762, 3062 |
| MroXI | GAANNNNTTC | 6 cut(s) | 150, 552, 1500, 1549, 1826, 3359 |
| MslI | CAYNNNNRTG | 3 cut(s) | 47, 2133, 2712 |
| MspA1I | CMGCKG | 1 cut(s) | 839 |
| MspI | CCGG | 3 cut(s) | 84, 122, 2361 |
| MunI | CAATTG | 1 cut(s) | 1926 |
| Mva1269I | GAATGC | 2 cut(s) | 821, 838 |
| MvnI | CGCG | 1 cut(s) | 144 |
| NciI | CCSGG | 1 cut(s) | 85 |
| NcoI | CCATGG | 2 cut(s) | 27, 2426 |
| NdeI | CATATG | 2 cut(s) | 2194, 2969 |
| NheI | GCTAGC | 1 cut(s) | 2867 |
| NlaIV | GGNNCC | 9 cut(s) | 195, 213, 309, 465, 495, 612, 1552, 1656, 2306 |
| NmeAIII | GCCGAG | 2 cut(s) | 743, 2933 |
| NspI | RCATGY | 1 cut(s) | 2420 |
| OliI | CACNNNNGTG | 1 cut(s) | 2133 |
| PaeR7I | CTCGAG | 1 cut(s) | 3040 |
| PagI | TCATGA | 2 cut(s) | 643, 2775 |
| PceI | AGGCCT | 1 cut(s) | 2467 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 509 |
| PctI | GAATGC | 2 cut(s) | 821, 838 |
| PdmI | GAANNNNTTC | 6 cut(s) | 150, 552, 1500, 1549, 1826, 3359 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3062 |
| PfoI | TCCNGGA | 1 cut(s) | 852 |
| PkrI | GCNGC | 8 cut(s) | 279, 838, 1261, 1627, 2209, 2212, 3131, 3392 |
| PleI | GAGTC | 4 cut(s) | 139, 568, 1606, 2787 |
| PpsI | GAGTC | 4 cut(s) | 139, 568, 1606, 2787 |
| PpuMI | RGGWCCY | 1 cut(s) | 2304 |
| PshBI | ATTAAT | 1 cut(s) | 2456 |
| PsiI | TTATAA | 1 cut(s) | 3422 |
| Psp5II | RGGWCCY | 1 cut(s) | 2304 |
| PspFI | CCCAGC | 3 cut(s) | 1773, 2903, 3045 |
| PspN4I | GGNNCC | 9 cut(s) | 195, 213, 309, 465, 495, 612, 1552, 1656, 2306 |
| PspPI | GGNCC | 3 cut(s) | 2304, 3065, 3199 |
| PspPPI | RGGWCCY | 1 cut(s) | 2304 |
| PstI | CTGCAG | 1 cut(s) | 2212 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2627, 3221 |
| PsuI | RGATCY | 6 cut(s) | 377, 425, 524, 2389, 3265, 3276 |
| PvuII | CAGCTG | 1 cut(s) | 839 |
| RsaI | GTAC | 3 cut(s) | 366, 1221, 2172 |
| RsaNI | GTAC | 3 cut(s) | 365, 1220, 2171 |
| RseI | CAYNNNNRTG | 3 cut(s) | 47, 2133, 2712 |
| SatI | GCNGC | 8 cut(s) | 278, 837, 1260, 1626, 2208, 2211, 3130, 3391 |
| Sau96I | GGNCC | 3 cut(s) | 2304, 3065, 3199 |
| SchI | GAGTC | 4 cut(s) | 140, 569, 1607, 2788 |
| SduI | GDGCHC | 6 cut(s) | 91, 245, 808, 1659, 2317, 3013 |
| SexAI | ACCWGGT | 1 cut(s) | 1948 |
| SfaNI | GCATC | 6 cut(s) | 264, 1272, 1354, 1885, 2614, 2866 |
| SfcI | CTRYAG | 3 cut(s) | 1005, 2208, 2395 |
| Sfr274I | CTCGAG | 1 cut(s) | 3040 |
| SinI | GGWCC | 3 cut(s) | 2304, 3065, 3199 |
| SlaI | CTCGAG | 1 cut(s) | 3040 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 47, 2133, 2712 |
| SmlI | CTYRAG | 2 cut(s) | 1266, 3040 |
| SmoI | CTYRAG | 2 cut(s) | 1266, 3040 |
| SpeI | ACTAGT | 1 cut(s) | 2150 |
| SseBI | AGGCCT | 1 cut(s) | 2467 |
| SsiI | CCGC | 8 cut(s) | 277, 344, 491, 819, 1012, 1025, 1625, 3130 |
| SspI | AATATT | 2 cut(s) | 1492, 2856 |
| SspMI | CTAG | 5 cut(s) | 1361, 1889, 1940, 2151, 2868 |
| StuI | AGGCCT | 1 cut(s) | 2467 |
| StyI | CCWWGG | 4 cut(s) | 27, 2157, 2308, 2426 |
| TaaI | ACNGT | 7 cut(s) | 103, 947, 1039, 1251, 1787, 1918, 2619 |
| TaiI | ACGT | 3 cut(s) | 626, 1483, 1501 |
| TaqII | GACCGA | 2 cut(s) | 750, 1166 |
| TatI | WGTACW | 2 cut(s) | 1219, 2170 |
| TauI | GCSGC | 3 cut(s) | 280, 1628, 3132 |
| TscAI | CASTG | 4 cut(s) | 2078, 2529, 2756, 3254 |
| TseI | GCWGC | 5 cut(s) | 836, 1259, 2207, 2210, 3390 |
| TspGWI | ACGGA | 1 cut(s) | 2930 |
| TspRI | CASTG | 4 cut(s) | 2078, 2529, 2756, 3254 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3062 |
| VpaK11BI | GGWCC | 3 cut(s) | 2304, 3065, 3199 |
| VspI | ATTAAT | 1 cut(s) | 2456 |
| XapI | RAATTY | 6 cut(s) | 21, 33, 756, 788, 1117, 1850 |
| XceI | RCATGY | 1 cut(s) | 2420 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2433 |
| XhoI | CTCGAG | 1 cut(s) | 3040 |
| XmiI | GTMKAC | 1 cut(s) | 1080 |
| XmnI | GAANNNNTTC | 6 cut(s) | 150, 552, 1500, 1549, 1826, 3359 |
| XspI | CTAG | 5 cut(s) | 1361, 1889, 1940, 2151, 2868 |