Rmu_sc0000383.1_g000032

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000383.1
Physical Location & Seq
Forward (+)
151500 .. 152922
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000383.1_g000032.1.cds

Sequence Viewer

Length: 1326 bp
atggattccaaagaggatgaaattcccatgggaattcccctcacgcctatgccaatgttggttaagcgcaggaataccagcaccggggctcgtatttcgaccgtgatcaagcaagagtggccggatgaggagtccgataagcgcgaaaagcttcccgtctcgaagattctaagctcgtcgtcgattgatgaggttcctgacacccaggaggaggagagaagtgttccgatcaaaatcaaggaagagtgctccgaggagatcgagcaggctgaaggatcgatgcggctaagcgaggccgaagcgatgagtgtggttcctgatagcctgggggatttggcgcaacaagaagcggaaaatgtttcgatccaggtacagagagttggatctgaggaggtggatgagcctgttttgatccaggtgaagagggaaggatctgaggaggtggaggaggccgaaacgatgagcgaggttcctgatagcctggctgaacaagaagctgaacctgtttcgattgaggcgaagaaagaaggatctgatgagatggatgaggccgaaaggcttcaggagtctaagcctgagaggttagagcagaatgaagttccagtcctgaatgtggagcctatttcgacgtttattaaattggaggatcatgaggaatatgaagccgaaaagcttttcgtgttgaagccgaaaggggtagtgaagaaggaagttgaagatggccgagagggtttgatcaagcaggaagagaatgtgaagaaaattcggtcggttctcgggtgtgaaatgcctgaatttgagattcttcgagcactttcagaatgcggtggagaccagaatgcagctgtcaatttcatcctggaaaatgcaggggcgattgtggttaagaaggctgatggggatgtggattcgtcgaagcctaagagcctggtgaagaaggaagtccctgactgtgaagtgatttcggttaagcaagtgaggccaccgaatttggaggatggggacttccctacagagagggattggcttgcggttggagggacagtagttactgcgctttcgacttccaaaggcaggaaattggtagacaatgagattgttaacctctcttttccttctgtaaattccagcaacaaaaccaggtggattgttcgtttctcaaccaaacgatctggagagattggtcgcttttcaatggaatgggcaaaatgtgttgttccacttgtacaatctggaaaggttaaggttcgtgggcggtgtatagctgcaccccaagtgctttccatgatgcaagagatcatgttgtatataaggtataggtcctag

Protein Analysis

441

Amino Acids

49.19

Weight (kDa)

4.68

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1086
AccII CGCG 1 cut(s) 144
AciI CCGC 5 cut(s) 283, 350, 825, 1031, 1255
AclWI GGATC 7 cut(s) 283, 358, 391, 406, 439, 538, 654
AcoI YGGCCR 2 cut(s) 119, 721
AcsI RAATTY 6 cut(s) 21, 33, 762, 794, 988, 1123
AcuI CTGAAG 2 cut(s) 291, 545
AfaI GTAC 2 cut(s) 372, 1227
AfiI CCNNNNNNNGG 4 cut(s) 84, 211, 613, 1074
AgsI TTSAA 3 cut(s) 685, 716, 1194
AjnI CCWGG 8 cut(s) 204, 324, 366, 414, 480, 858, 927, 1139
AluBI AGCT 6 cut(s) 151, 174, 497, 673, 845, 1265
AluI AGCT 6 cut(s) 151, 174, 497, 673, 845, 1265
Alw21I GWGCWC 2 cut(s) 251, 814
Alw26I GTCTC 2 cut(s) 163, 825
AlwI GGATC 7 cut(s) 283, 358, 391, 406, 439, 538, 654
Ama87I CYCGRG 1 cut(s) 776
AoxI GGCC 6 cut(s) 119, 294, 450, 549, 721, 980
ApeKI GCWGC 2 cut(s) 842, 1265
ApoI RAATTY 6 cut(s) 21, 33, 762, 794, 988, 1123
Asp700I GAANNNNTTC 2 cut(s) 150, 558
AspLEI GCGC 4 cut(s) 69, 144, 340, 1057
AspS9I GGNCC 1 cut(s) 1320
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 430, 943
AvaI CYCGRG 1 cut(s) 776
AvaII GGWCC 1 cut(s) 1320
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 2 cut(s) 251, 814
BbvI GCAGC 2 cut(s) 854, 1252
BccI CCATC 4 cut(s) 535, 713, 890, 992
BciT130I CCWGG 8 cut(s) 206, 326, 368, 416, 482, 860, 929, 1141
BclI TGATCA 2 cut(s) 105, 735
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 163, 825
BfaI CTAG 1 cut(s) 1324
BfmI CTRYAG 1 cut(s) 1011
BisI GCNGC 3 cut(s) 284, 843, 1266
BlpI GCTNAGC 1 cut(s) 287
BlsI GCNGC 3 cut(s) 285, 844, 1267
Bme1390I CCNGG 9 cut(s) 85, 206, 326, 368, 416, 482, 860, 929, 1141
Bme18I GGWCC 1 cut(s) 1320
BmeT110I CYCGRG 1 cut(s) 776
BmgT120I GGNCC 1 cut(s) 1320
BmiI GGNNCC 4 cut(s) 195, 315, 471, 618
BmrFI CCNGG 9 cut(s) 85, 206, 326, 368, 416, 482, 860, 929, 1141
BmsI GCATC 2 cut(s) 270, 1278
BpmI CTGGAG 1 cut(s) 1194
Bpu1102I GCTNAGC 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 85
Bsa29I ATCGAT 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 825
BsaJI CCNNGG 5 cut(s) 27, 84, 204, 252, 325
BsaXI ACNNNNNCTCC 2 cut(s) 1029, 1059
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 211, 613, 1074
Bse1I ACTGG 1 cut(s) 602
Bse8I GATNNNNATC 1 cut(s) 233
BseBI CCWGG 8 cut(s) 206, 326, 368, 416, 482, 860, 929, 1141
BseCI ATCGAT 1 cut(s) 278
BseDI CCNNGG 5 cut(s) 27, 84, 204, 252, 325
BseGI GGATG 7 cut(s) 22, 130, 403, 550, 855, 907, 1003
BseJI GATNNNNATC 1 cut(s) 233
BseLI CCNNNNNNNGG 4 cut(s) 84, 211, 613, 1074
BseMII CTCAG 3 cut(s) 378, 426, 567
BseNI ACTGG 1 cut(s) 602
BseRI GAGGAG 7 cut(s) 143, 224, 227, 269, 404, 452, 461
BseXI GCAGC 2 cut(s) 854, 1252
BsgI GTGCAG 1 cut(s) 1251
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 2 cut(s) 102, 770
BshFI GGCC 6 cut(s) 121, 296, 452, 551, 723, 982
BshVI ATCGAT 1 cut(s) 278
BsiEI CGRYCG 2 cut(s) 102, 770
BsiHKAI GWGCWC 2 cut(s) 251, 814
BsiHKCI CYCGRG 1 cut(s) 776
BsiSI CCGG 2 cut(s) 84, 122
BslFI GGGAC 3 cut(s) 929, 1016, 1054
BslI CCNNNNNNNGG 4 cut(s) 84, 211, 613, 1074
BsmAI GTCTC 2 cut(s) 163, 825
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 3 cut(s) 929, 1016, 1054
BsmI GAATGC 2 cut(s) 827, 844
BsnI GGCC 6 cut(s) 121, 296, 452, 551, 723, 982
Bso31I GGTCTC 1 cut(s) 825
BsoBI CYCGRG 1 cut(s) 776
Bsp1286I GDGCHC 3 cut(s) 91, 251, 814
Bsp1407I TGTACA 1 cut(s) 1225
Bsp1720I GCTNAGC 1 cut(s) 287
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 5 cut(s) 283, 350, 825, 1031, 1255
BspANI GGCC 6 cut(s) 121, 296, 452, 551, 723, 982
BspCNI CTCAG 3 cut(s) 379, 427, 568
BspDI ATCGAT 1 cut(s) 278
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 4 cut(s) 195, 315, 471, 618
BspPI GGATC 7 cut(s) 283, 358, 391, 406, 439, 538, 654
BspTNI GGTCTC 1 cut(s) 825
BsrGI TGTACA 1 cut(s) 1225
BsrI ACTGG 1 cut(s) 602
BssECI CCNNGG 5 cut(s) 27, 84, 204, 252, 325
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 8 cut(s) 206, 326, 368, 416, 482, 860, 929, 1141
Bst4CI ACNGT 3 cut(s) 103, 953, 1045
Bst6I CTCTTC 3 cut(s) 237, 416, 741
BstAUI TGTACA 1 cut(s) 1225
BstC8I GCNNGC 2 cut(s) 267, 1029
BstDEI CTNAG 7 cut(s) 170, 287, 387, 435, 570, 576, 921
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 7 cut(s) 22, 130, 403, 550, 855, 907, 1003
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 4 cut(s) 69, 144, 340, 1057
BstMAI GTCTC 2 cut(s) 163, 825
BstMCI CGRYCG 2 cut(s) 102, 770
BstMWI GCNNNNNNNGC 3 cut(s) 118, 148, 979
BstNI CCWGG 8 cut(s) 206, 326, 368, 416, 482, 860, 929, 1141
BstSCI CCNGG 9 cut(s) 83, 204, 324, 366, 414, 480, 858, 927, 1139
BstSFI CTRYAG 1 cut(s) 1011
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 854, 1252
BstX2I RGATCY 3 cut(s) 383, 431, 530
BstYI RGATCY 3 cut(s) 383, 431, 530
Bsu15I ATCGAT 1 cut(s) 278
BsuRI GGCC 6 cut(s) 121, 296, 452, 551, 723, 982
BsuTUI ATCGAT 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 317
BtsCI GGATG 7 cut(s) 22, 130, 403, 550, 855, 907, 1003
Cac8I GCNNGC 2 cut(s) 267, 1029
CciI TCATGA 1 cut(s) 649
CfoI GCGC 4 cut(s) 69, 144, 340, 1057
Cfr13I GGNCC 1 cut(s) 1320
ClaI ATCGAT 1 cut(s) 278
CsiI ACCWGGT 1 cut(s) 1139
Csp6I GTAC 2 cut(s) 371, 1226
CspCI CAANNNNNGTGG 2 cut(s) 972, 1007
CviAII CATG 4 cut(s) 28, 650, 1285, 1300
CviQI GTAC 2 cut(s) 371, 1226
DdeI CTNAG 7 cut(s) 170, 287, 387, 435, 570, 576, 921
EaeI YGGCCR 2 cut(s) 119, 721
Eam1104I CTCTTC 3 cut(s) 237, 416, 741
EarI CTCTTC 3 cut(s) 237, 416, 741
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 825
Eco47I GGWCC 1 cut(s) 1320
Eco57I CTGAAG 2 cut(s) 291, 545
Eco88I CYCGRG 1 cut(s) 776
EcoO109I RGGNCCY 1 cut(s) 1320
EcoRI GAATTC 1 cut(s) 33
EcoRII CCWGG 8 cut(s) 204, 324, 366, 414, 480, 858, 927, 1139
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 4 cut(s) 31, 653, 1288, 1303
FaqI GGGAC 3 cut(s) 929, 1016, 1054
FatI CATG 4 cut(s) 27, 649, 1284, 1299
FbaI TGATCA 2 cut(s) 105, 735
FblI GTMKAC 1 cut(s) 1086
Fnu4HI GCNGC 3 cut(s) 284, 843, 1266
FokI GGATG 7 cut(s) 29, 137, 410, 557, 842, 914, 1010
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 3 cut(s) 284, 843, 1266
FspBI CTAG 1 cut(s) 1324
GlaI GCGC 4 cut(s) 68, 143, 339, 1056
GluI GCNGC 3 cut(s) 284, 843, 1266
GsuI CTGGAG 1 cut(s) 1194
HaeIII GGCC 6 cut(s) 121, 296, 452, 551, 723, 982
HapII CCGG 2 cut(s) 84, 122
HhaI GCGC 4 cut(s) 69, 144, 340, 1057
Hin1II CATG 4 cut(s) 31, 653, 1288, 1303
Hin6I GCGC 4 cut(s) 67, 142, 338, 1055
HinP1I GCGC 4 cut(s) 67, 142, 338, 1055
HincII GTYRAC 1 cut(s) 1102
HindII GTYRAC 1 cut(s) 1102
HindIII AAGCTT 2 cut(s) 149, 671
HinfI GANTC 6 cut(s) 5, 131, 166, 566, 802, 908
HpaI GTTAAC 1 cut(s) 1102
HpaII CCGG 2 cut(s) 84, 122
HphI GGTGA 2 cut(s) 430, 943
Hpy166II GTNNAC 2 cut(s) 1087, 1102
Hpy188I TCNGA 7 cut(s) 136, 228, 253, 388, 436, 535, 820
Hpy188III TCNNGA 9 cut(s) 160, 197, 317, 473, 563, 607, 650, 1173, 1233
Hpy8I GTNNAC 2 cut(s) 1087, 1102
Hpy99I CGWCG 4 cut(s) 181, 184, 631, 916
HpyAV CCTTC 7 cut(s) 266, 422, 521, 700, 883, 931, 1125
HpyCH4III ACNGT 3 cut(s) 103, 953, 1045
HpyCH4IV ACGT 1 cut(s) 629
HpyCH4V TGCA 4 cut(s) 842, 869, 1268, 1291
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 148, 979
HpyF3I CTNAG 7 cut(s) 170, 287, 387, 435, 570, 576, 921
HpySE526I ACGT 1 cut(s) 629
Hsp92II CATG 4 cut(s) 31, 653, 1288, 1303
HspAI GCGC 4 cut(s) 67, 142, 338, 1055
Ksp22I TGATCA 2 cut(s) 105, 735
KspAI GTTAAC 1 cut(s) 1102
LmnI GCTCC 2 cut(s) 254, 616
Lsp1109I GCAGC 2 cut(s) 854, 1252
LweI GCATC 2 cut(s) 270, 1278
MabI ACCWGGT 1 cut(s) 1139
MaeI CTAG 1 cut(s) 1324
MaeII ACGT 1 cut(s) 629
MaeIII GTNAC 1 cut(s) 1048
MflI RGATCY 3 cut(s) 383, 431, 530
MhlI GDGCHC 3 cut(s) 91, 251, 814
MluCI AATT 9 cut(s) 21, 33, 638, 762, 794, 850, 988, 1079, 1123
MlyI GAGTC 2 cut(s) 140, 575
MmeI TCCRAC 2 cut(s) 361, 1015
MroXI GAANNNNTTC 2 cut(s) 150, 558
MseI TTAA 6 cut(s) 63, 636, 885, 969, 1101, 1242
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 845
MspI CCGG 2 cut(s) 84, 122
MspR9I CCNGG 9 cut(s) 85, 206, 326, 368, 416, 482, 860, 929, 1141
Mva1269I GAATGC 2 cut(s) 827, 844
MvaI CCWGG 8 cut(s) 206, 326, 368, 416, 482, 860, 929, 1141
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 118, 148, 979
NciI CCSGG 1 cut(s) 85
NcoI CCATGG 1 cut(s) 27
NlaIII CATG 4 cut(s) 31, 653, 1288, 1303
NlaIV GGNNCC 4 cut(s) 195, 315, 471, 618
NmeAIII GCCGAG 1 cut(s) 749
PagI TCATGA 1 cut(s) 649
PcsI WCGNNNNNNNCGW 1 cut(s) 515
PctI GAATGC 2 cut(s) 827, 844
PdmI GAANNNNTTC 2 cut(s) 150, 558
PfeI GAWTC 4 cut(s) 5, 166, 802, 908
PfoI TCCNGGA 1 cut(s) 858
PkrI GCNGC 3 cut(s) 285, 844, 1267
PleI GAGTC 2 cut(s) 139, 574
PpsI GAGTC 2 cut(s) 139, 574
PpuMI RGGWCCY 1 cut(s) 1320
Psp5II RGGWCCY 1 cut(s) 1320
Psp6I CCWGG 8 cut(s) 204, 324, 366, 414, 480, 858, 927, 1139
PspGI CCWGG 8 cut(s) 204, 324, 366, 414, 480, 858, 927, 1139
PspN4I GGNNCC 4 cut(s) 195, 315, 471, 618
PspPI GGNCC 1 cut(s) 1320
PspPPI RGGWCCY 1 cut(s) 1320
PsuI RGATCY 3 cut(s) 383, 431, 530
PvuII CAGCTG 1 cut(s) 845
RsaI GTAC 2 cut(s) 372, 1227
RsaNI GTAC 2 cut(s) 371, 1226
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 6 cut(s) 63, 636, 885, 969, 1101, 1242
SatI GCNGC 3 cut(s) 284, 843, 1266
Sau96I GGNCC 1 cut(s) 1320
SchI GAGTC 2 cut(s) 140, 575
ScrFI CCNGG 9 cut(s) 85, 206, 326, 368, 416, 482, 860, 929, 1141
SduI GDGCHC 3 cut(s) 91, 251, 814
SexAI ACCWGGT 1 cut(s) 1139
SfaNI GCATC 2 cut(s) 270, 1278
SfcI CTRYAG 1 cut(s) 1011
SinI GGWCC 1 cut(s) 1320
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 9 cut(s) 21, 33, 638, 762, 794, 850, 988, 1079, 1123
SsiI CCGC 5 cut(s) 283, 350, 825, 1031, 1255
SspMI CTAG 1 cut(s) 1324
StyD4I CCNGG 9 cut(s) 83, 204, 324, 366, 414, 480, 858, 927, 1139
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 3 cut(s) 103, 953, 1045
TaiI ACGT 1 cut(s) 632
TaqII GACCGA 1 cut(s) 756
TasI AATT 9 cut(s) 21, 33, 638, 762, 794, 850, 988, 1079, 1123
TatI WGTACW 1 cut(s) 1225
TauI GCSGC 1 cut(s) 286
TfiI GAWTC 4 cut(s) 5, 166, 802, 908
Tru1I TTAA 6 cut(s) 63, 636, 885, 969, 1101, 1242
Tru9I TTAA 6 cut(s) 63, 636, 885, 969, 1101, 1242
TseI GCWGC 2 cut(s) 842, 1265
TspDTI ATGAA 4 cut(s) 33, 609, 675, 844
VpaK11BI GGWCC 1 cut(s) 1320
XapI RAATTY 6 cut(s) 21, 33, 762, 794, 988, 1123
XmiI GTMKAC 1 cut(s) 1086
XmnI GAANNNNTTC 2 cut(s) 150, 558
XspI CTAG 1 cut(s) 1324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.