Rorug03G0336400

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
39531325 .. 39535798
4474 bp
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UTR
Exon/CDS
Intron
Rorug03G0336400.1

Sequence Viewer

Length: 219 bp
ATGATTGACCAAATGCTTCAACAGACTCAATCACAGGATGTTGGGTACAAAGCTACTTCATATATAGATTGTGCAGGAGGGGAAAGATACAGTTCATGTAATCTCAATCAAGTCAAGCTGGCTTGCAATCTCTTGCCGGTTATTCTCCATGGATTCTATTGGGGCAAACCTCAGAATAACATTAATATCGCGGATGCTATCAATGTTTTAGTTGTGTGA

Protein Analysis

72

Amino Acids

7.99

Weight (kDa)

5.45

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 191
AfaI GTAC 1 cut(s) 47
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 2 cut(s) 53, 118
AluI AGCT 2 cut(s) 53, 118
AseI ATTAAT 1 cut(s) 183
BmsI GCATC 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 43, 199
BseMII CTCAG 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 137
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 184
BspFNI CGCG 1 cut(s) 191
BsrFI RCCGGY 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 120, 124
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 2 cut(s) 43, 199
BstFNI CGCG 1 cut(s) 191
BstUI CGCG 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 2 cut(s) 43, 199
Cac8I GCNNGC 2 cut(s) 120, 124
Cfr10I RCCGGY 1 cut(s) 136
Csp6I GTAC 1 cut(s) 46
CviAII CATG 2 cut(s) 96, 149
CviJI RGCY 3 cut(s) 53, 118, 122
CviKI_1 RGCY 3 cut(s) 53, 118, 122
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 99, 152
FaiI YATR 5 cut(s) 61, 63, 65, 97, 150
FatI CATG 2 cut(s) 95, 148
FokI GGATG 2 cut(s) 50, 206
HapII CCGG 1 cut(s) 137
Hin1II CATG 2 cut(s) 99, 152
HinfI GANTC 2 cut(s) 25, 153
HpaII CCGG 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 174
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 74, 126
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 2 cut(s) 99, 152
LpnPI CCDG 4 cut(s) 20, 60, 104, 150
LweI GCATC 1 cut(s) 184
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 2 cut(s) 71, 180
MseI TTAA 1 cut(s) 183
MspI CCGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 191
NcoI CCATGG 1 cut(s) 148
NlaIII CATG 2 cut(s) 99, 152
PfeI GAWTC 1 cut(s) 153
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 183
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 183
SchI GAGTC 1 cut(s) 19
SetI ASST 3 cut(s) 55, 120, 172
SfaNI GCATC 1 cut(s) 184
SsiI CCGC 1 cut(s) 191
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 92
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TspDTI ATGAA 2 cut(s) 48, 84
VspI ATTAAT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.