SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HIRAN | PF08797 | 144 - 236 | 4.6e-12 | HIRAN domain |
| ResIII | PF04851 | 347 - 574 | 9.1e-09 | Type III restriction enzyme, res subunit |
| SNF2-rel_dom | PF00176 | 350 - 705 | 5.6e-63 | SNF2-related domain |
| zf-C3HC4_2 | PF13923 | 760 - 787 | 3.8e-06 | Zinc finger, C3HC4 type (RING finger) |
| zf-C3HC4 | PF00097 | 761 - 800 | 2.6e-07 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_UBOX | PF13445 | 761 - 791 | 1.2e-06 | RING-type zinc-finger |
| zf-C3HC4_4 | PF15227 | 761 - 800 | 4.4e-07 | zinc finger of C3HC4-type, RING |
| Helicase_C | PF00271 | 836 - 944 | 2e-16 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2855 |
| AatII | GACGTC | 2 cut(s) | 305, 1746 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1388, 2381 |
| AccI | GTMKAC | 1 cut(s) | 1746 |
| AciI | CCGC | 3 cut(s) | 452, 652, 2917 |
| AclI | AACGTT | 1 cut(s) | 41 |
| AclWI | GGATC | 7 cut(s) | 229, 1829, 2169, 2303, 2592, 2771, 2784 |
| AcoI | YGGCCR | 1 cut(s) | 2366 |
| AcsI | RAATTY | 9 cut(s) | 385, 520, 625, 781, 815, 1985, 2472, 2820, 2979 |
| AcuI | CTGAAG | 1 cut(s) | 1709 |
| AcyI | GRCGYC | 2 cut(s) | 302, 1743 |
| AdeI | CACNNNGTG | 1 cut(s) | 2327 |
| AfaI | GTAC | 3 cut(s) | 1484, 2316, 2320 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 174, 770, 1388, 1432, 2381 |
| AflIII | ACRYGT | 1 cut(s) | 370 |
| AgeI | ACCGGT | 1 cut(s) | 167 |
| AhlI | ACTAGT | 3 cut(s) | 196, 461, 895 |
| AjnI | CCWGG | 2 cut(s) | 2783, 2960 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 156, 188, 531, 563, 833, 865 |
| Alw21I | GWGCWC | 3 cut(s) | 1027, 2332, 2935 |
| Alw26I | GTCTC | 5 cut(s) | 309, 1892, 2357, 2365, 2721 |
| Alw44I | GTGCAC | 1 cut(s) | 2328 |
| AlwI | GGATC | 7 cut(s) | 229, 1829, 2169, 2303, 2592, 2771, 2784 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1976 |
| Ama87I | CYCGRG | 1 cut(s) | 47 |
| AoxI | GGCC | 5 cut(s) | 96, 159, 1919, 2366, 2595 |
| ApaLI | GTGCAC | 1 cut(s) | 2328 |
| ApeKI | GCWGC | 6 cut(s) | 989, 1673, 2644, 2753, 2893, 2914 |
| ApoI | RAATTY | 9 cut(s) | 385, 520, 625, 781, 815, 1985, 2472, 2820, 2979 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2232, 2264 |
| AseI | ATTAAT | 2 cut(s) | 1731, 1808 |
| AsiGI | ACCGGT | 1 cut(s) | 167 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 42 |
| AspA2I | CCTAGG | 1 cut(s) | 188 |
| AspLEI | GCGC | 2 cut(s) | 667, 2041 |
| AspS9I | GGNCC | 1 cut(s) | 96 |
| AsuC2I | CCSGG | 3 cut(s) | 48, 49, 1601 |
| AsuHPI | GGTGA | 6 cut(s) | 340, 811, 995, 1844, 2144, 2744 |
| AvaI | CYCGRG | 1 cut(s) | 47 |
| AvrII | CCTAGG | 1 cut(s) | 188 |
| BaeGI | GKGCMC | 1 cut(s) | 2332 |
| BamHI | GGATCC | 1 cut(s) | 2776 |
| BanII | GRGCYC | 3 cut(s) | 292, 1874, 2935 |
| BbsI | GAAGAC | 3 cut(s) | 27, 1277, 2478 |
| Bbv12I | GWGCWC | 3 cut(s) | 1027, 2332, 2935 |
| BbvCI | CCTCAGC | 1 cut(s) | 1668 |
| BbvI | GCAGC | 6 cut(s) | 1001, 1660, 2631, 2765, 2905, 2926 |
| BccI | CCATC | 8 cut(s) | 123, 389, 734, 1009, 1222, 1695, 1907, 2630 |
| BciT130I | CCWGG | 2 cut(s) | 2785, 2962 |
| BciVI | GTATCC | 1 cut(s) | 186 |
| BclI | TGATCA | 2 cut(s) | 9, 1963 |
| BcnI | CCSGG | 3 cut(s) | 48, 49, 1601 |
| BcoDI | GTCTC | 5 cut(s) | 309, 1892, 2357, 2365, 2721 |
| BcuI | ACTAGT | 3 cut(s) | 196, 461, 895 |
| BfaI | CTAG | 6 cut(s) | 189, 197, 462, 896, 2169, 2741 |
| BfmI | CTRYAG | 3 cut(s) | 1747, 2751, 2891 |
| BfuI | GTATCC | 1 cut(s) | 186 |
| BglII | AGATCT | 1 cut(s) | 2743 |
| BisI | GCNGC | 6 cut(s) | 990, 1674, 2645, 2754, 2894, 2915 |
| BlnI | CCTAGG | 1 cut(s) | 188 |
| BlsI | GCNGC | 6 cut(s) | 991, 1675, 2646, 2755, 2895, 2916 |
| Bme1390I | CCNGG | 5 cut(s) | 48, 49, 1601, 2785, 2962 |
| BmeT110I | CYCGRG | 1 cut(s) | 47 |
| BmgT120I | GGNCC | 1 cut(s) | 96 |
| BmiI | GGNNCC | 3 cut(s) | 150, 2539, 2778 |
| BmrFI | CCNGG | 5 cut(s) | 48, 49, 1601, 2785, 2962 |
| BmsI | GCATC | 7 cut(s) | 208, 675, 976, 1243, 1552, 1869, 2765 |
| BpiI | GAAGAC | 3 cut(s) | 27, 1277, 2478 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1668 |
| BpuEI | CTTGAG | 1 cut(s) | 2344 |
| BpuMI | CCSGG | 3 cut(s) | 48, 49, 1601 |
| BsaAI | YACGTR | 1 cut(s) | 2318 |
| BsaHI | GRCGYC | 2 cut(s) | 302, 1743 |
| BsaI | GGTCTC | 1 cut(s) | 2365 |
| BsaJI | CCNNGG | 7 cut(s) | 47, 188, 769, 1373, 1778, 2691, 2783 |
| BsaWI | WCCGGW | 2 cut(s) | 167, 2927 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 745, 775, 1702, 1732, 1917, 1947 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 174, 770, 1388, 1432, 2381 |
| Bse118I | RCCGGY | 1 cut(s) | 167 |
| Bse1I | ACTGG | 9 cut(s) | 1426, 1793, 1932, 1957, 2020, 2067, 2455, 2566, 2731 |
| Bse3DI | GCAATG | 2 cut(s) | 1263, 1693 |
| BseBI | CCWGG | 2 cut(s) | 2785, 2962 |
| BseDI | CCNNGG | 7 cut(s) | 47, 188, 769, 1373, 1778, 2691, 2783 |
| BseGI | GGATG | 9 cut(s) | 34, 400, 745, 1077, 1123, 1441, 1797, 1953, 2925 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 174, 770, 1388, 1432, 2381 |
| BseMI | GCAATG | 2 cut(s) | 1263, 1693 |
| BseMII | CTCAG | 9 cut(s) | 320, 395, 1031, 1203, 1401, 1412, 1659, 2169, 2667 |
| BseNI | ACTGG | 9 cut(s) | 1426, 1793, 1932, 1957, 2020, 2067, 2455, 2566, 2731 |
| BseRI | GAGGAG | 7 cut(s) | 158, 161, 753, 1025, 1251, 2345, 2816 |
| BseSI | GKGCMC | 1 cut(s) | 2332 |
| BseXI | GCAGC | 6 cut(s) | 1001, 1660, 2631, 2765, 2905, 2926 |
| BseYI | CCCAGC | 1 cut(s) | 1131 |
| BsgI | GTGCAG | 1 cut(s) | 2362 |
| BshFI | GGCC | 5 cut(s) | 98, 161, 1921, 2368, 2597 |
| BshTI | ACCGGT | 1 cut(s) | 167 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1027, 2332, 2935 |
| BsiHKCI | CYCGRG | 1 cut(s) | 47 |
| BsiSI | CCGG | 6 cut(s) | 48, 168, 416, 1600, 2648, 2928 |
| BslFI | GGGAC | 4 cut(s) | 1275, 1641, 2268, 2675 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 174, 770, 1388, 1432, 2381 |
| BsmAI | GTCTC | 5 cut(s) | 309, 1892, 2357, 2365, 2721 |
| BsmBI | CGTCTC | 2 cut(s) | 309, 1892 |
| BsmFI | GGGAC | 4 cut(s) | 1275, 1641, 2268, 2675 |
| BsnI | GGCC | 5 cut(s) | 98, 161, 1921, 2368, 2597 |
| Bso31I | GGTCTC | 1 cut(s) | 2365 |
| BsoBI | CYCGRG | 1 cut(s) | 47 |
| Bsp1286I | GDGCHC | 5 cut(s) | 292, 1027, 1874, 2332, 2935 |
| Bsp19I | CCATGG | 2 cut(s) | 1373, 1778 |
| BspACI | CCGC | 3 cut(s) | 452, 652, 2917 |
| BspANI | GGCC | 5 cut(s) | 98, 161, 1921, 2368, 2597 |
| BspCNI | CTCAG | 9 cut(s) | 319, 394, 1032, 1202, 1402, 1413, 1660, 2168, 2668 |
| BspHI | TCATGA | 1 cut(s) | 2191 |
| BspLI | GGNNCC | 3 cut(s) | 150, 2539, 2778 |
| BspMAI | CTGCAG | 2 cut(s) | 2755, 2895 |
| BspPI | GGATC | 7 cut(s) | 229, 1829, 2169, 2303, 2592, 2771, 2784 |
| BspQI | GCTCTTC | 1 cut(s) | 861 |
| BspTNI | GGTCTC | 1 cut(s) | 2365 |
| BsrDI | GCAATG | 2 cut(s) | 1263, 1693 |
| BsrFI | RCCGGY | 1 cut(s) | 167 |
| BsrI | ACTGG | 9 cut(s) | 1426, 1793, 1932, 1957, 2020, 2067, 2455, 2566, 2731 |
| BssAI | RCCGGY | 1 cut(s) | 167 |
| BssECI | CCNNGG | 7 cut(s) | 47, 188, 769, 1373, 1778, 2691, 2783 |
| BssNI | GRCGYC | 2 cut(s) | 302, 1743 |
| BssT1I | CCWWGG | 4 cut(s) | 188, 769, 1373, 1778 |
| Bst2UI | CCWGG | 2 cut(s) | 2785, 2962 |
| Bst4CI | ACNGT | 7 cut(s) | 350, 757, 924, 1276, 2450, 2738, 2878 |
| Bst6I | CTCTTC | 5 cut(s) | 861, 1125, 2235, 2600, 2605 |
| BstACI | GRCGYC | 2 cut(s) | 302, 1743 |
| BstBAI | YACGTR | 1 cut(s) | 2318 |
| BstC8I | GCNNGC | 1 cut(s) | 2166 |
| BstDSI | CCRYGG | 3 cut(s) | 1373, 1778, 2691 |
| BstF5I | GGATG | 9 cut(s) | 34, 400, 745, 1077, 1123, 1441, 1797, 1953, 2925 |
| BstHHI | GCGC | 2 cut(s) | 667, 2041 |
| BstMAI | GTCTC | 5 cut(s) | 309, 1892, 2357, 2365, 2721 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 218, 1317, 1673, 1758, 2653 |
| BstNI | CCWGG | 2 cut(s) | 2785, 2962 |
| BstNSI | RCATGY | 3 cut(s) | 374, 2235, 2656 |
| BstSCI | CCNGG | 5 cut(s) | 46, 47, 1599, 2783, 2960 |
| BstSFI | CTRYAG | 3 cut(s) | 1747, 2751, 2891 |
| BstSLI | GKGCMC | 1 cut(s) | 2332 |
| BstSNI | TACGTA | 1 cut(s) | 2318 |
| BstV1I | GCAGC | 6 cut(s) | 1001, 1660, 2631, 2765, 2905, 2926 |
| BstV2I | GAAGAC | 3 cut(s) | 27, 1277, 2478 |
| BstX2I | RGATCY | 4 cut(s) | 2174, 2584, 2743, 2776 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 597, 2293 |
| BstYI | RGATCY | 4 cut(s) | 2174, 2584, 2743, 2776 |
| BsuI | GTATCC | 1 cut(s) | 186 |
| BsuRI | GGCC | 5 cut(s) | 98, 161, 1921, 2368, 2597 |
| BtgI | CCRYGG | 3 cut(s) | 1373, 1778, 2691 |
| BtsCI | GGATG | 9 cut(s) | 34, 400, 745, 1077, 1123, 1441, 1797, 1953, 2925 |
| BtsI | GCAGTG | 1 cut(s) | 2105 |
| BtsIMutI | CAGTG | 6 cut(s) | 1433, 1964, 2074, 2105, 2573, 2937 |
| Cac8I | GCNNGC | 1 cut(s) | 2166 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1976 |
| CciI | TCATGA | 1 cut(s) | 2191 |
| CfoI | GCGC | 2 cut(s) | 667, 2041 |
| Cfr10I | RCCGGY | 1 cut(s) | 167 |
| Cfr13I | GGNCC | 1 cut(s) | 96 |
| Cfr9I | CCCGGG | 1 cut(s) | 47 |
| Csp6I | GTAC | 3 cut(s) | 1483, 2315, 2319 |
| CspAI | ACCGGT | 1 cut(s) | 167 |
| CviQI | GTAC | 3 cut(s) | 1483, 2315, 2319 |
| DraIII | CACNNNGTG | 1 cut(s) | 2327 |
| EaeI | YGGCCR | 1 cut(s) | 2366 |
| Eam1104I | CTCTTC | 5 cut(s) | 861, 1125, 2235, 2600, 2605 |
| EarI | CTCTTC | 5 cut(s) | 861, 1125, 2235, 2600, 2605 |
| Ecl136II | GAGCTC | 1 cut(s) | 2933 |
| Eco105I | TACGTA | 1 cut(s) | 2318 |
| Eco130I | CCWWGG | 4 cut(s) | 188, 769, 1373, 1778 |
| Eco147I | AGGCCT | 1 cut(s) | 2597 |
| Eco24I | GRGCYC | 3 cut(s) | 292, 1874, 2935 |
| Eco31I | GGTCTC | 1 cut(s) | 2365 |
| Eco32I | GATATC | 3 cut(s) | 694, 1107, 1552 |
| Eco53kI | GAGCTC | 1 cut(s) | 2933 |
| Eco57I | CTGAAG | 1 cut(s) | 1709 |
| Eco88I | CYCGRG | 1 cut(s) | 47 |
| EcoICRI | GAGCTC | 1 cut(s) | 2933 |
| EcoRI | GAATTC | 3 cut(s) | 625, 815, 2820 |
| EcoRII | CCWGG | 2 cut(s) | 2783, 2960 |
| EcoRV | GATATC | 3 cut(s) | 694, 1107, 1552 |
| EcoT14I | CCWWGG | 4 cut(s) | 188, 769, 1373, 1778 |
| EcoT22I | ATGCAT | 2 cut(s) | 848, 2658 |
| EcoT38I | GRGCYC | 3 cut(s) | 292, 1874, 2935 |
| ErhI | CCWWGG | 4 cut(s) | 188, 769, 1373, 1778 |
| Esp3I | CGTCTC | 2 cut(s) | 309, 1892 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 939, 971 |
| FaqI | GGGAC | 4 cut(s) | 1275, 1641, 2268, 2675 |
| FauNDI | CATATG | 1 cut(s) | 2288 |
| FbaI | TGATCA | 2 cut(s) | 9, 1963 |
| FblI | GTMKAC | 1 cut(s) | 1746 |
| Fnu4HI | GCNGC | 6 cut(s) | 990, 1674, 2645, 2754, 2894, 2915 |
| FokI | GGATG | 9 cut(s) | 41, 407, 752, 1084, 1110, 1448, 1804, 1940, 2932 |
| FriOI | GRGCYC | 3 cut(s) | 292, 1874, 2935 |
| Fsp4HI | GCNGC | 6 cut(s) | 990, 1674, 2645, 2754, 2894, 2915 |
| FspBI | CTAG | 6 cut(s) | 189, 197, 462, 896, 2169, 2741 |
| GlaI | GCGC | 2 cut(s) | 666, 2040 |
| GluI | GCNGC | 6 cut(s) | 990, 1674, 2645, 2754, 2894, 2915 |
| GsaI | CCCAGC | 1 cut(s) | 1135 |
| HaeIII | GGCC | 5 cut(s) | 98, 161, 1921, 2368, 2597 |
| HapII | CCGG | 6 cut(s) | 48, 168, 416, 1600, 2648, 2928 |
| HhaI | GCGC | 2 cut(s) | 667, 2041 |
| Hin1I | GRCGYC | 2 cut(s) | 302, 1743 |
| Hin6I | GCGC | 2 cut(s) | 665, 2039 |
| HinP1I | GCGC | 2 cut(s) | 665, 2039 |
| HincII | GTYRAC | 2 cut(s) | 1180, 1539 |
| HindII | GTYRAC | 2 cut(s) | 1180, 1539 |
| HindIII | AAGCTT | 1 cut(s) | 2162 |
| HpaII | CCGG | 6 cut(s) | 48, 168, 416, 1600, 2648, 2928 |
| HphI | GGTGA | 6 cut(s) | 340, 811, 995, 1844, 2144, 2744 |
| Hpy166II | GTNNAC | 6 cut(s) | 1180, 1483, 1539, 1747, 2321, 2330 |
| Hpy8I | GTNNAC | 6 cut(s) | 1180, 1483, 1539, 1747, 2321, 2330 |
| Hpy99I | CGWCG | 2 cut(s) | 304, 562 |
| HpyCH4III | ACNGT | 7 cut(s) | 350, 757, 924, 1276, 2450, 2738, 2878 |
| HpyCH4IV | ACGT | 5 cut(s) | 41, 302, 1485, 1743, 2317 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 218, 1317, 1673, 1758, 2653 |
| HpySE526I | ACGT | 5 cut(s) | 41, 302, 1485, 1743, 2317 |
| Hsp92I | GRCGYC | 2 cut(s) | 302, 1743 |
| HspAI | GCGC | 2 cut(s) | 665, 2039 |
| Ksp22I | TGATCA | 2 cut(s) | 9, 1963 |
| LguI | GCTCTTC | 1 cut(s) | 861 |
| LmnI | GCTCC | 4 cut(s) | 148, 217, 1325, 2930 |
| Lsp1109I | GCAGC | 6 cut(s) | 1001, 1660, 2631, 2765, 2905, 2926 |
| LweI | GCATC | 7 cut(s) | 208, 675, 976, 1243, 1552, 1869, 2765 |
| MaeI | CTAG | 6 cut(s) | 189, 197, 462, 896, 2169, 2741 |
| MaeII | ACGT | 5 cut(s) | 41, 302, 1485, 1743, 2317 |
| MaeIII | GTNAC | 3 cut(s) | 1458, 1496, 2732 |
| MfeI | CAATTG | 2 cut(s) | 1284, 2202 |
| MflI | RGATCY | 4 cut(s) | 2174, 2584, 2743, 2776 |
| MhlI | GDGCHC | 5 cut(s) | 292, 1027, 1874, 2332, 2935 |
| MlyI | GAGTC | 8 cut(s) | 17, 320, 971, 1051, 1421, 1466, 2147, 2492 |
| MmeI | TCCRAC | 4 cut(s) | 1049, 1056, 1238, 2439 |
| Mph1103I | ATGCAT | 2 cut(s) | 848, 2658 |
| MroXI | GAANNNNTTC | 1 cut(s) | 42 |
| MseI | TTAA | 7 cut(s) | 639, 779, 1731, 1808, 2088, 2403, 2466 |
| MspA1I | CMGCKG | 1 cut(s) | 2917 |
| MspI | CCGG | 6 cut(s) | 48, 168, 416, 1600, 2648, 2928 |
| MspR9I | CCNGG | 5 cut(s) | 48, 49, 1601, 2785, 2962 |
| MunI | CAATTG | 2 cut(s) | 1284, 2202 |
| MvaI | CCWGG | 2 cut(s) | 2785, 2962 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 218, 1317, 1673, 1758, 2653 |
| NciI | CCSGG | 3 cut(s) | 48, 49, 1601 |
| NcoI | CCATGG | 2 cut(s) | 1373, 1778 |
| NdeI | CATATG | 1 cut(s) | 2288 |
| NlaIV | GGNNCC | 3 cut(s) | 150, 2539, 2778 |
| NmeAIII | GCCGAG | 1 cut(s) | 2394 |
| NmuCI | GTSAC | 3 cut(s) | 1458, 1496, 2732 |
| NsiI | ATGCAT | 2 cut(s) | 848, 2658 |
| NspI | RCATGY | 3 cut(s) | 374, 2235, 2656 |
| PagI | TCATGA | 1 cut(s) | 2191 |
| PceI | AGGCCT | 1 cut(s) | 2597 |
| PciI | ACATGT | 1 cut(s) | 370 |
| PciSI | GCTCTTC | 1 cut(s) | 861 |
| PdmI | GAANNNNTTC | 1 cut(s) | 42 |
| PfeI | GAWTC | 8 cut(s) | 279, 833, 1355, 1646, 2135, 2195, 2531, 2788 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1388, 2381 |
| PfoI | TCCNGGA | 1 cut(s) | 2960 |
| PinAI | ACCGGT | 1 cut(s) | 167 |
| PkrI | GCNGC | 6 cut(s) | 991, 1675, 2646, 2755, 2895, 2916 |
| PleI | GAGTC | 8 cut(s) | 17, 319, 970, 1050, 1420, 1465, 2147, 2491 |
| PpsI | GAGTC | 8 cut(s) | 17, 319, 970, 1050, 1420, 1465, 2147, 2491 |
| Ppu21I | YACGTR | 1 cut(s) | 2318 |
| PscI | ACATGT | 1 cut(s) | 370 |
| PshBI | ATTAAT | 2 cut(s) | 1731, 1808 |
| PsiI | TTATAA | 1 cut(s) | 2855 |
| Psp124BI | GAGCTC | 1 cut(s) | 2935 |
| Psp1406I | AACGTT | 1 cut(s) | 41 |
| Psp6I | CCWGG | 2 cut(s) | 2783, 2960 |
| PspFI | CCCAGC | 1 cut(s) | 1131 |
| PspGI | CCWGG | 2 cut(s) | 2783, 2960 |
| PspN4I | GGNNCC | 3 cut(s) | 150, 2539, 2778 |
| PspPI | GGNCC | 1 cut(s) | 96 |
| PstI | CTGCAG | 2 cut(s) | 2755, 2895 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1976 |
| PsuI | RGATCY | 4 cut(s) | 2174, 2584, 2743, 2776 |
| RsaI | GTAC | 3 cut(s) | 1484, 2316, 2320 |
| RsaNI | GTAC | 3 cut(s) | 1483, 2315, 2319 |
| SacI | GAGCTC | 1 cut(s) | 2935 |
| SapI | GCTCTTC | 1 cut(s) | 861 |
| SaqAI | TTAA | 7 cut(s) | 639, 779, 1731, 1808, 2088, 2403, 2466 |
| SatI | GCNGC | 6 cut(s) | 990, 1674, 2645, 2754, 2894, 2915 |
| Sau96I | GGNCC | 1 cut(s) | 96 |
| SchI | GAGTC | 8 cut(s) | 17, 320, 971, 1051, 1421, 1466, 2147, 2492 |
| ScrFI | CCNGG | 5 cut(s) | 48, 49, 1601, 2785, 2962 |
| SduI | GDGCHC | 5 cut(s) | 292, 1027, 1874, 2332, 2935 |
| SfaNI | GCATC | 7 cut(s) | 208, 675, 976, 1243, 1552, 1869, 2765 |
| SfcI | CTRYAG | 3 cut(s) | 1747, 2751, 2891 |
| SmaI | CCCGGG | 1 cut(s) | 49 |
| SmlI | CTYRAG | 1 cut(s) | 2359 |
| SmoI | CTYRAG | 1 cut(s) | 2359 |
| SnaBI | TACGTA | 1 cut(s) | 2318 |
| SpeI | ACTAGT | 3 cut(s) | 196, 461, 895 |
| SseBI | AGGCCT | 1 cut(s) | 2597 |
| SsiI | CCGC | 3 cut(s) | 452, 652, 2917 |
| SspI | AATATT | 1 cut(s) | 1330 |
| SspMI | CTAG | 6 cut(s) | 189, 197, 462, 896, 2169, 2741 |
| SstI | GAGCTC | 1 cut(s) | 2935 |
| StuI | AGGCCT | 1 cut(s) | 2597 |
| StyD4I | CCNGG | 5 cut(s) | 46, 47, 1599, 2783, 2960 |
| StyI | CCWWGG | 4 cut(s) | 188, 769, 1373, 1778 |
| TaaI | ACNGT | 7 cut(s) | 350, 757, 924, 1276, 2450, 2738, 2878 |
| TaiI | ACGT | 5 cut(s) | 44, 305, 1488, 1746, 2320 |
| TfiI | GAWTC | 8 cut(s) | 279, 833, 1355, 1646, 2135, 2195, 2531, 2788 |
| Tru1I | TTAA | 7 cut(s) | 639, 779, 1731, 1808, 2088, 2403, 2466 |
| Tru9I | TTAA | 7 cut(s) | 639, 779, 1731, 1808, 2088, 2403, 2466 |
| TscAI | CASTG | 6 cut(s) | 1433, 1964, 2074, 2105, 2573, 2944 |
| TseFI | GTSAC | 3 cut(s) | 1458, 1496, 2732 |
| TseI | GCWGC | 6 cut(s) | 989, 1673, 2644, 2753, 2893, 2914 |
| Tsp45I | GTSAC | 3 cut(s) | 1458, 1496, 2732 |
| TspGWI | ACGGA | 3 cut(s) | 752, 2708, 2851 |
| TspMI | CCCGGG | 1 cut(s) | 47 |
| TspRI | CASTG | 6 cut(s) | 1433, 1964, 2074, 2105, 2573, 2944 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1388, 2381 |
| VneI | GTGCAC | 1 cut(s) | 2328 |
| VspI | ATTAAT | 2 cut(s) | 1731, 1808 |
| XapI | RAATTY | 9 cut(s) | 385, 520, 625, 781, 815, 1985, 2472, 2820, 2979 |
| XbaI | TCTAGA | 1 cut(s) | 2740 |
| XceI | RCATGY | 3 cut(s) | 374, 2235, 2656 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1225, 1785, 2698 |
| XmaI | CCCGGG | 1 cut(s) | 47 |
| XmaJI | CCTAGG | 1 cut(s) | 188 |
| XmiI | GTMKAC | 1 cut(s) | 1746 |
| XmnI | GAANNNNTTC | 1 cut(s) | 42 |
| XspI | CTAG | 6 cut(s) | 189, 197, 462, 896, 2169, 2741 |
| ZraI | GACGTC | 2 cut(s) | 303, 1744 |
| Zsp2I | ATGCAT | 2 cut(s) | 848, 2658 |