SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SNF2-rel_dom | PF00176 | 268 - 472 | 1.7e-34 | SNF2-related domain |
| RING_XB3-XBAT31 | PF24921 | 527 - 560 | 5.4e-06 | E3 ubiquitin-protein ligase XB3/XBAT31 RING finger |
| zf-RING_UBOX | PF13445 | 528 - 559 | 1.5e-06 | RING-type zinc-finger |
| zf-C3HC4_2 | PF13923 | 528 - 553 | 4.7e-06 | Zinc finger, C3HC4 type (RING finger) |
| Helicase_C | PF00271 | 612 - 721 | 4.9e-13 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 267 |
| AccB1I | GGYRCC | 1 cut(s) | 1686 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1333 |
| AccIII | TCCGGA | 1 cut(s) | 199 |
| AciI | CCGC | 7 cut(s) | 100, 176, 340, 423, 1430, 2020, 2127 |
| AclWI | GGATC | 7 cut(s) | 367, 949, 1127, 1604, 1920, 2102, 2115 |
| AcoI | YGGCCR | 2 cut(s) | 84, 2289 |
| AcsI | RAATTY | 6 cut(s) | 75, 161, 313, 359, 539, 1851 |
| AcuI | CTGAAG | 6 cut(s) | 930, 1290, 1841, 1993, 2082, 2216 |
| AcvI | CACGTG | 1 cut(s) | 16 |
| AcyI | GRCGYC | 1 cut(s) | 1115 |
| AdeI | CACNNNGTG | 1 cut(s) | 1628 |
| AfaI | GTAC | 3 cut(s) | 29, 706, 1617 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 698, 784, 1333 |
| AflII | CTTAAG | 1 cut(s) | 1022 |
| AflIII | ACRYGT | 3 cut(s) | 13, 642, 1534 |
| AgsI | TTSAA | 9 cut(s) | 417, 484, 740, 1247, 1484, 1571, 1827, 1837, 2002 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1972 |
| AjnI | CCWGG | 3 cut(s) | 894, 1719, 1782 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1640, 1672 |
| AluBI | AGCT | 8 cut(s) | 114, 521, 962, 1274, 1753, 1831, 2066, 2230 |
| AluI | AGCT | 8 cut(s) | 114, 521, 962, 1274, 1753, 1831, 2066, 2230 |
| Alw21I | GWGCWC | 3 cut(s) | 116, 921, 1755 |
| Alw26I | GTCTC | 1 cut(s) | 1666 |
| AlwI | GGATC | 7 cut(s) | 367, 949, 1127, 1604, 1920, 2102, 2115 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1868 |
| Aor13HI | TCCGGA | 1 cut(s) | 199 |
| AoxI | GGCC | 7 cut(s) | 54, 84, 210, 597, 1169, 1898, 2289 |
| ApeKI | GCWGC | 5 cut(s) | 425, 962, 971, 2084, 2245 |
| ApoI | RAATTY | 6 cut(s) | 75, 161, 313, 359, 539, 1851 |
| AseI | ATTAAT | 2 cut(s) | 1106, 1710 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 644, 1851, 2006 |
| AspLEI | GCGC | 2 cut(s) | 355, 736 |
| AspS9I | GGNCC | 3 cut(s) | 34, 775, 2302 |
| AsuC2I | CCSGG | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 4 cut(s) | 62, 466, 820, 1142 |
| AvaII | GGWCC | 3 cut(s) | 34, 775, 2302 |
| BamHI | GGATCC | 1 cut(s) | 2107 |
| BanI | GGYRCC | 1 cut(s) | 1686 |
| BanII | GRGCYC | 3 cut(s) | 116, 124, 1755 |
| BauI | CACGAG | 1 cut(s) | 109 |
| BbrPI | CACGTG | 1 cut(s) | 16 |
| BbsI | GAAGAC | 3 cut(s) | 432, 1044, 1806 |
| Bbv12I | GWGCWC | 3 cut(s) | 116, 921, 1755 |
| BbvCI | CCTCAGC | 1 cut(s) | 2130 |
| BbvI | GCAGC | 5 cut(s) | 412, 949, 958, 2096, 2257 |
| BccI | CCATC | 8 cut(s) | 65, 803, 993, 1205, 1497, 1569, 1677, 1732 |
| BceAI | ACGGC | 2 cut(s) | 71, 99 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2063, 2097 |
| BciT130I | CCWGG | 3 cut(s) | 896, 1721, 1784 |
| BciVI | GTATCC | 2 cut(s) | 474, 1568 |
| BcnI | CCSGG | 1 cut(s) | 118 |
| BcoDI | GTCTC | 1 cut(s) | 1666 |
| BfaI | CTAG | 2 cut(s) | 1470, 2238 |
| BfmI | CTRYAG | 2 cut(s) | 1045, 1449 |
| BfrI | CTTAAG | 1 cut(s) | 1022 |
| BfuI | GTATCC | 2 cut(s) | 474, 1568 |
| BglII | AGATCT | 1 cut(s) | 1923 |
| BisI | GCNGC | 5 cut(s) | 426, 963, 972, 2085, 2246 |
| BlsI | GCNGC | 5 cut(s) | 427, 964, 973, 2086, 2247 |
| Bme1390I | CCNGG | 4 cut(s) | 118, 896, 1721, 1784 |
| Bme18I | GGWCC | 3 cut(s) | 34, 775, 2302 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1972 |
| BmgT120I | GGNCC | 3 cut(s) | 34, 775, 2302 |
| BmiI | GGNNCC | 5 cut(s) | 36, 204, 1015, 1688, 2109 |
| BmrFI | CCNGG | 4 cut(s) | 118, 896, 1721, 1784 |
| BmrI | ACTGGG | 1 cut(s) | 1096 |
| BmsI | GCATC | 4 cut(s) | 721, 916, 1282, 1890 |
| BmuI | ACTGGG | 1 cut(s) | 1096 |
| BpiI | GAAGAC | 3 cut(s) | 432, 1044, 1806 |
| Bpu10I | CCTNAGC | 2 cut(s) | 966, 2130 |
| BpuEI | CTTGAG | 2 cut(s) | 693, 1681 |
| BpuMI | CCSGG | 1 cut(s) | 118 |
| Bsa29I | ATCGAT | 1 cut(s) | 2284 |
| BsaAI | YACGTR | 1 cut(s) | 16 |
| BsaBI | GATNNNNATC | 2 cut(s) | 462, 1968 |
| BsaHI | GRCGYC | 1 cut(s) | 1115 |
| BsaJI | CCNNGG | 6 cut(s) | 117, 804, 1076, 1372, 1693, 2111 |
| BsaWI | WCCGGW | 1 cut(s) | 199 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 698, 784, 1333 |
| Bse1I | ACTGG | 4 cut(s) | 908, 1091, 1327, 1808 |
| Bse3DI | GCAATG | 1 cut(s) | 991 |
| Bse8I | GATNNNNATC | 2 cut(s) | 462, 1968 |
| BseAI | TCCGGA | 1 cut(s) | 199 |
| BseBI | CCWGG | 3 cut(s) | 896, 1721, 1784 |
| BseCI | ATCGAT | 1 cut(s) | 2284 |
| BseDI | CCNNGG | 6 cut(s) | 117, 804, 1076, 1372, 1693, 2111 |
| BseGI | GGATG | 3 cut(s) | 537, 583, 1743 |
| BseJI | GATNNNNATC | 2 cut(s) | 462, 1968 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 698, 784, 1333 |
| BseMI | GCAATG | 1 cut(s) | 991 |
| BseMII | CTCAG | 3 cut(s) | 663, 1740, 2121 |
| BseNI | ACTGG | 4 cut(s) | 908, 1091, 1327, 1808 |
| BseRI | GAGGAG | 2 cut(s) | 711, 2147 |
| BseX3I | CGGCCG | 1 cut(s) | 84 |
| BseXI | GCAGC | 5 cut(s) | 412, 949, 958, 2096, 2257 |
| BseYI | CCCAGC | 1 cut(s) | 591 |
| BsgI | GTGCAG | 2 cut(s) | 1663, 2103 |
| Bsh1285I | CGRYCG | 2 cut(s) | 87, 2288 |
| BshFI | GGCC | 7 cut(s) | 56, 86, 212, 599, 1171, 1900, 2291 |
| BshNI | GGYRCC | 1 cut(s) | 1686 |
| BshVI | ATCGAT | 1 cut(s) | 2284 |
| BsiEI | CGRYCG | 2 cut(s) | 87, 2288 |
| BsiHKAI | GWGCWC | 3 cut(s) | 116, 921, 1755 |
| BsiSI | CCGG | 2 cut(s) | 117, 200 |
| BslFI | GGGAC | 2 cut(s) | 20, 2252 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 698, 784, 1333 |
| BsmAI | GTCTC | 1 cut(s) | 1666 |
| BsmFI | GGGAC | 2 cut(s) | 20, 2252 |
| BsnI | GGCC | 7 cut(s) | 56, 86, 212, 599, 1171, 1900, 2291 |
| Bsp1286I | GDGCHC | 4 cut(s) | 116, 124, 921, 1755 |
| Bsp13I | TCCGGA | 1 cut(s) | 199 |
| Bsp19I | CCATGG | 2 cut(s) | 1076, 2111 |
| BspACI | CCGC | 7 cut(s) | 100, 176, 340, 423, 1430, 2020, 2127 |
| BspANI | GGCC | 7 cut(s) | 56, 86, 212, 599, 1171, 1900, 2291 |
| BspCNI | CTCAG | 3 cut(s) | 662, 1741, 2122 |
| BspDI | ATCGAT | 1 cut(s) | 2284 |
| BspEI | TCCGGA | 1 cut(s) | 199 |
| BspHI | TCATGA | 2 cut(s) | 70, 1492 |
| BspLI | GGNNCC | 5 cut(s) | 36, 204, 1015, 1688, 2109 |
| BspMAI | CTGCAG | 1 cut(s) | 1453 |
| BspPI | GGATC | 7 cut(s) | 367, 949, 1127, 1604, 1920, 2102, 2115 |
| BspT107I | GGYRCC | 1 cut(s) | 1686 |
| BspTI | CTTAAG | 1 cut(s) | 1022 |
| BsrDI | GCAATG | 1 cut(s) | 991 |
| BsrI | ACTGG | 4 cut(s) | 908, 1091, 1327, 1808 |
| BssECI | CCNNGG | 6 cut(s) | 117, 804, 1076, 1372, 1693, 2111 |
| BssNI | GRCGYC | 1 cut(s) | 1115 |
| BssSI | CACGAG | 1 cut(s) | 109 |
| BssT1I | CCWWGG | 4 cut(s) | 1076, 1372, 1693, 2111 |
| Bst2BI | CACGAG | 1 cut(s) | 109 |
| Bst2UI | CCWGG | 3 cut(s) | 896, 1721, 1784 |
| Bst4CI | ACNGT | 6 cut(s) | 94, 884, 1579, 1778, 2179, 2209 |
| Bst6I | CTCTTC | 2 cut(s) | 585, 1928 |
| BstACI | GRCGYC | 1 cut(s) | 1115 |
| BstAFI | CTTAAG | 1 cut(s) | 1022 |
| BstBAI | YACGTR | 1 cut(s) | 16 |
| BstC8I | GCNNGC | 4 cut(s) | 124, 1093, 1467, 2222 |
| BstDEI | CTNAG | 5 cut(s) | 649, 966, 1749, 1818, 2130 |
| BstDSI | CCRYGG | 3 cut(s) | 804, 1076, 2111 |
| BstF5I | GGATG | 3 cut(s) | 537, 583, 1743 |
| BstHHI | GCGC | 2 cut(s) | 355, 736 |
| BstMAI | GTCTC | 1 cut(s) | 1666 |
| BstMCI | CGRYCG | 2 cut(s) | 87, 2288 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 959, 968, 971, 1072, 1599, 2019 |
| BstNI | CCWGG | 3 cut(s) | 896, 1721, 1784 |
| BstNSI | RCATGY | 6 cut(s) | 646, 1070, 1095, 1370, 1538, 2224 |
| BstSCI | CCNGG | 4 cut(s) | 116, 894, 1719, 1782 |
| BstSFI | CTRYAG | 2 cut(s) | 1045, 1449 |
| BstV1I | GCAGC | 5 cut(s) | 412, 949, 958, 2096, 2257 |
| BstV2I | GAAGAC | 3 cut(s) | 432, 1044, 1806 |
| BstX2I | RGATCY | 4 cut(s) | 941, 1912, 1923, 2107 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 285 |
| BstYI | RGATCY | 4 cut(s) | 941, 1912, 1923, 2107 |
| BstZI | CGGCCG | 1 cut(s) | 84 |
| Bsu15I | ATCGAT | 1 cut(s) | 2284 |
| BsuI | GTATCC | 2 cut(s) | 474, 1568 |
| BsuRI | GGCC | 7 cut(s) | 56, 86, 212, 599, 1171, 1900, 2291 |
| BsuTUI | ATCGAT | 1 cut(s) | 2284 |
| BtgI | CCRYGG | 3 cut(s) | 804, 1076, 2111 |
| BtsCI | GGATG | 3 cut(s) | 537, 583, 1743 |
| BtsI | GCAGTG | 1 cut(s) | 1403 |
| BtsIMutI | CAGTG | 5 cut(s) | 261, 889, 1403, 1901, 2214 |
| Cac8I | GCNNGC | 4 cut(s) | 124, 1093, 1467, 2222 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1868 |
| CciI | TCATGA | 2 cut(s) | 70, 1492 |
| CfoI | GCGC | 2 cut(s) | 355, 736 |
| Cfr13I | GGNCC | 3 cut(s) | 34, 775, 2302 |
| ClaI | ATCGAT | 1 cut(s) | 2284 |
| CseI | GACGC | 2 cut(s) | 1123, 2076 |
| CsiI | ACCWGGT | 1 cut(s) | 894 |
| Csp6I | GTAC | 3 cut(s) | 28, 705, 1616 |
| CviQI | GTAC | 3 cut(s) | 28, 705, 1616 |
| DdeI | CTNAG | 5 cut(s) | 649, 966, 1749, 1818, 2130 |
| DraIII | CACNNNGTG | 1 cut(s) | 1628 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 267 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1972 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 267 |
| EaeI | YGGCCR | 2 cut(s) | 84, 2289 |
| EagI | CGGCCG | 1 cut(s) | 84 |
| Eam1104I | CTCTTC | 2 cut(s) | 585, 1928 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1972 |
| EarI | CTCTTC | 2 cut(s) | 585, 1928 |
| Ecl136II | GAGCTC | 2 cut(s) | 114, 1753 |
| EclXI | CGGCCG | 1 cut(s) | 84 |
| Eco130I | CCWWGG | 4 cut(s) | 1076, 1372, 1693, 2111 |
| Eco147I | AGGCCT | 1 cut(s) | 599 |
| Eco24I | GRGCYC | 3 cut(s) | 116, 124, 1755 |
| Eco47I | GGWCC | 3 cut(s) | 34, 775, 2302 |
| Eco52I | CGGCCG | 1 cut(s) | 84 |
| Eco53kI | GAGCTC | 2 cut(s) | 114, 1753 |
| Eco57I | CTGAAG | 6 cut(s) | 930, 1290, 1841, 1993, 2082, 2216 |
| Eco72I | CACGTG | 1 cut(s) | 16 |
| EcoICRI | GAGCTC | 2 cut(s) | 114, 1753 |
| EcoO109I | RGGNCCY | 2 cut(s) | 34, 2302 |
| EcoRI | GAATTC | 1 cut(s) | 313 |
| EcoRII | CCWGG | 3 cut(s) | 894, 1719, 1782 |
| EcoT14I | CCWWGG | 4 cut(s) | 1076, 1372, 1693, 2111 |
| EcoT38I | GRGCYC | 3 cut(s) | 116, 124, 1755 |
| ErhI | CCWWGG | 4 cut(s) | 1076, 1372, 1693, 2111 |
| FaqI | GGGAC | 2 cut(s) | 20, 2252 |
| FauI | CCCGC | 1 cut(s) | 2134 |
| FauNDI | CATATG | 2 cut(s) | 1589, 1606 |
| Fnu4HI | GCNGC | 5 cut(s) | 426, 963, 972, 2085, 2246 |
| FokI | GGATG | 3 cut(s) | 544, 570, 1750 |
| FriOI | GRGCYC | 3 cut(s) | 116, 124, 1755 |
| Fsp4HI | GCNGC | 5 cut(s) | 426, 963, 972, 2085, 2246 |
| FspBI | CTAG | 2 cut(s) | 1470, 2238 |
| GlaI | GCGC | 2 cut(s) | 354, 735 |
| GluI | GCNGC | 5 cut(s) | 426, 963, 972, 2085, 2246 |
| GsaI | CCCAGC | 1 cut(s) | 595 |
| HaeIII | GGCC | 7 cut(s) | 56, 86, 212, 599, 1171, 1900, 2291 |
| HapII | CCGG | 2 cut(s) | 117, 200 |
| HgaI | GACGC | 2 cut(s) | 1123, 2076 |
| HhaI | GCGC | 2 cut(s) | 355, 736 |
| Hin1I | GRCGYC | 1 cut(s) | 1115 |
| Hin6I | GCGC | 2 cut(s) | 353, 734 |
| HinP1I | GCGC | 2 cut(s) | 353, 734 |
| HincII | GTYRAC | 2 cut(s) | 901, 1008 |
| HindII | GTYRAC | 2 cut(s) | 901, 1008 |
| HpaII | CCGG | 2 cut(s) | 117, 200 |
| HphI | GGTGA | 4 cut(s) | 62, 466, 820, 1142 |
| Hpy166II | GTNNAC | 4 cut(s) | 640, 901, 1008, 1631 |
| Hpy8I | GTNNAC | 4 cut(s) | 640, 901, 1008, 1631 |
| Hpy99I | CGWCG | 1 cut(s) | 85 |
| HpyAV | CCTTC | 7 cut(s) | 180, 202, 541, 710, 1801, 1911, 1996 |
| HpyCH4III | ACNGT | 6 cut(s) | 94, 884, 1579, 1778, 2179, 2209 |
| HpyCH4IV | ACGT | 3 cut(s) | 15, 703, 1242 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 959, 968, 971, 1072, 1599, 2019 |
| HpyF3I | CTNAG | 5 cut(s) | 649, 966, 1749, 1818, 2130 |
| HpySE526I | ACGT | 3 cut(s) | 15, 703, 1242 |
| Hsp92I | GRCGYC | 1 cut(s) | 1115 |
| HspAI | GCGC | 2 cut(s) | 353, 734 |
| Kpn2I | TCCGGA | 1 cut(s) | 199 |
| LmnI | GCTCC | 3 cut(s) | 119, 202, 1080 |
| Lsp1109I | GCAGC | 5 cut(s) | 412, 949, 958, 2096, 2257 |
| LweI | GCATC | 4 cut(s) | 721, 916, 1282, 1890 |
| MabI | ACCWGGT | 1 cut(s) | 894 |
| MaeI | CTAG | 2 cut(s) | 1470, 2238 |
| MaeII | ACGT | 3 cut(s) | 15, 703, 1242 |
| MaeIII | GTNAC | 2 cut(s) | 88, 2069 |
| MflI | RGATCY | 4 cut(s) | 941, 1912, 1923, 2107 |
| MhlI | GDGCHC | 4 cut(s) | 116, 124, 921, 1755 |
| MlyI | GAGTC | 4 cut(s) | 127, 761, 1435, 1820 |
| MmeI | TCCRAC | 4 cut(s) | 104, 523, 1768, 1956 |
| MroI | TCCGGA | 1 cut(s) | 199 |
| MroXI | GAANNNNTTC | 3 cut(s) | 644, 1851, 2006 |
| MslI | CAYNNNNRTG | 3 cut(s) | 635, 726, 1359 |
| MspA1I | CMGCKG | 2 cut(s) | 425, 2129 |
| MspCI | CTTAAG | 1 cut(s) | 1022 |
| MspI | CCGG | 2 cut(s) | 117, 200 |
| MspR9I | CCNGG | 4 cut(s) | 118, 896, 1721, 1784 |
| MvaI | CCWGG | 3 cut(s) | 896, 1721, 1784 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 959, 968, 971, 1072, 1599, 2019 |
| NciI | CCSGG | 1 cut(s) | 118 |
| NcoI | CCATGG | 2 cut(s) | 1076, 2111 |
| NdeI | CATATG | 2 cut(s) | 1589, 1606 |
| NlaIV | GGNNCC | 5 cut(s) | 36, 204, 1015, 1688, 2109 |
| NmuCI | GTSAC | 1 cut(s) | 88 |
| NspI | RCATGY | 6 cut(s) | 646, 1070, 1095, 1370, 1538, 2224 |
| PaeI | GCATGC | 2 cut(s) | 1095, 2224 |
| PagI | TCATGA | 2 cut(s) | 70, 1492 |
| PceI | AGGCCT | 1 cut(s) | 599 |
| PciI | ACATGT | 2 cut(s) | 642, 1534 |
| PdmI | GAANNNNTTC | 3 cut(s) | 644, 1851, 2006 |
| PfeI | GAWTC | 7 cut(s) | 196, 458, 1436, 1476, 1496, 1516, 2119 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1333 |
| PkrI | GCNGC | 5 cut(s) | 427, 964, 973, 2086, 2247 |
| Ple19I | CGATCG | 1 cut(s) | 2288 |
| PleI | GAGTC | 4 cut(s) | 127, 760, 1434, 1819 |
| PmaCI | CACGTG | 1 cut(s) | 16 |
| PmlI | CACGTG | 1 cut(s) | 16 |
| PpsI | GAGTC | 4 cut(s) | 127, 760, 1434, 1819 |
| Ppu21I | YACGTR | 1 cut(s) | 16 |
| PpuMI | RGGWCCY | 2 cut(s) | 34, 2302 |
| PscI | ACATGT | 2 cut(s) | 642, 1534 |
| PshBI | ATTAAT | 2 cut(s) | 1106, 1710 |
| Psp124BI | GAGCTC | 2 cut(s) | 116, 1755 |
| Psp5II | RGGWCCY | 2 cut(s) | 34, 2302 |
| Psp6I | CCWGG | 3 cut(s) | 894, 1719, 1782 |
| PspCI | CACGTG | 1 cut(s) | 16 |
| PspFI | CCCAGC | 1 cut(s) | 591 |
| PspGI | CCWGG | 3 cut(s) | 894, 1719, 1782 |
| PspN4I | GGNNCC | 5 cut(s) | 36, 204, 1015, 1688, 2109 |
| PspPI | GGNCC | 3 cut(s) | 34, 775, 2302 |
| PspPPI | RGGWCCY | 2 cut(s) | 34, 2302 |
| PstI | CTGCAG | 1 cut(s) | 1453 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1868 |
| PsuI | RGATCY | 4 cut(s) | 941, 1912, 1923, 2107 |
| PvuI | CGATCG | 1 cut(s) | 2288 |
| RsaI | GTAC | 3 cut(s) | 29, 706, 1617 |
| RsaNI | GTAC | 3 cut(s) | 28, 705, 1616 |
| RseI | CAYNNNNRTG | 3 cut(s) | 635, 726, 1359 |
| SacI | GAGCTC | 2 cut(s) | 116, 1755 |
| SatI | GCNGC | 5 cut(s) | 426, 963, 972, 2085, 2246 |
| Sau96I | GGNCC | 3 cut(s) | 34, 775, 2302 |
| SchI | GAGTC | 4 cut(s) | 127, 761, 1435, 1820 |
| ScrFI | CCNGG | 4 cut(s) | 118, 896, 1721, 1784 |
| SduI | GDGCHC | 4 cut(s) | 116, 124, 921, 1755 |
| SexAI | ACCWGGT | 1 cut(s) | 894 |
| SfaNI | GCATC | 4 cut(s) | 721, 916, 1282, 1890 |
| SfcI | CTRYAG | 2 cut(s) | 1045, 1449 |
| SinI | GGWCC | 3 cut(s) | 34, 775, 2302 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 635, 726, 1359 |
| SmlI | CTYRAG | 3 cut(s) | 708, 1022, 1660 |
| SmoI | CTYRAG | 3 cut(s) | 708, 1022, 1660 |
| SphI | GCATGC | 2 cut(s) | 1095, 2224 |
| SseBI | AGGCCT | 1 cut(s) | 599 |
| SsiI | CCGC | 7 cut(s) | 100, 176, 340, 423, 1430, 2020, 2127 |
| SspMI | CTAG | 2 cut(s) | 1470, 2238 |
| SstI | GAGCTC | 2 cut(s) | 116, 1755 |
| StuI | AGGCCT | 1 cut(s) | 599 |
| StyD4I | CCNGG | 4 cut(s) | 116, 894, 1719, 1782 |
| StyI | CCWWGG | 4 cut(s) | 1076, 1372, 1693, 2111 |
| TaaI | ACNGT | 6 cut(s) | 94, 884, 1579, 1778, 2179, 2209 |
| TaiI | ACGT | 3 cut(s) | 18, 706, 1245 |
| TaqI | TCGA | 7 cut(s) | 131, 184, 561, 755, 921, 1424, 2284 |
| TatI | WGTACW | 1 cut(s) | 1615 |
| TfiI | GAWTC | 7 cut(s) | 196, 458, 1436, 1476, 1496, 1516, 2119 |
| TscAI | CASTG | 5 cut(s) | 261, 889, 1403, 1901, 2214 |
| TseFI | GTSAC | 1 cut(s) | 88 |
| TseI | GCWGC | 5 cut(s) | 425, 962, 971, 2084, 2245 |
| Tsp45I | GTSAC | 1 cut(s) | 88 |
| TspRI | CASTG | 5 cut(s) | 261, 889, 1403, 1901, 2214 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1333 |
| Vha464I | CTTAAG | 1 cut(s) | 1022 |
| VpaK11BI | GGWCC | 3 cut(s) | 34, 775, 2302 |
| VspI | ATTAAT | 2 cut(s) | 1106, 1710 |
| XapI | RAATTY | 6 cut(s) | 75, 161, 313, 359, 539, 1851 |
| XbaI | TCTAGA | 1 cut(s) | 2237 |
| XceI | RCATGY | 6 cut(s) | 646, 1070, 1095, 1370, 1538, 2224 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 802, 1083 |
| XmnI | GAANNNNTTC | 3 cut(s) | 644, 1851, 2006 |
| XspI | CTAG | 2 cut(s) | 1470, 2238 |