Rroxscaffold_5G00337140

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000759
Physical Location & Seq
Reverse (-)
5184840 .. 5190232
5393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00337140.1

Sequence Viewer

Length: 1533 bp
ATGGATACAGAACACGTGGCTGATCGGCACAAAGTCCCATCAGTTATCGGTGAGCTCATCAATTCCGATCAAGAAATTCCGACGGCCGTGACGGTCAAGAGGACGAACACGAGCTCCGGGGCTCGCATTTCGACTCTGATCAAGCAAGAGTGCATTGAGGATTTTGATGAAGTTTTGATTCCGGAGCCGAAGGCCAAGAGGGTAAAGGAGGAAGTTGCTGATTGTGAAGTGGTGTCAGTGCAACAGGTGAGACCTCAGAATTTGGAGGATGGCGATTTCAATATTGAACCGGATTGGTTCTTGGCGGGAAGCACATTGGTTTCTGTGGTTTCGACTAGTAAAGGCATGAAATTGTTGGACAATGAGATTGTTCATCTCTCTTTTCCTTCCTCAAATTCCAGCTACTACCTGACTATCTATATTGGTCGGTTTCCAATGGAATGGACAAAATGTGTTGTTCCTCTTGTGAATTCTGGTAAGGTTAAAGTCCTTGGGCGGTTTATAGGTGTGCCGAAATTCCTATCTATGATGCAAGAGATCATATTGTCTGTTGACTGGTATAGGGTGGTGCTCGATGAAGCTGATACTCTTGGATCTTCAAGGGCAAAAAAAGCTGCTAAGGTTGCTTCTATGTTGTCCTCTCATTGCCGATGGTGGTTGACAGGAACCCCACTTAAGACACCTTATGAACATGGTGATCCAAGAGGATTGAGATTGATAAAGGACATTTTGAGGCCATTGATGTTAAGAAGAACAAAGAAGGCAAAGGAGAAAGATGGAAGCCCCATACTCATTCTTCCTCCTGACATTGAAACCATTGAGTGTCATCAGTCTGAAGCTGAACAAGAGTTCTATGATGCCCTTTTTAAGAGATCAAAAGTTCCGTTTGACCAGTTTGTGGCACAAGGCAAGGTTCTTCACAACTATGAAAATGCCCTTGGGCTACTGCTTTGTTTAAGGCAGTACTTGGACAAGCCTGCTAGAAGATTCCTTGAAACCCATCATGATTCTCCAAGTTCAGATCAGATTCTCCCCACCCAATTACATGTCGGAGAGGTTGTTGAGCGTATCTGTAGGGTTGGAAATACAGTGTGTCCCATATGCTTGGATTGCACATATGATCCTGTACTTACACCATGTGGGCATAAGATGTGCAGGGAGTGTCTGTTCTCAAGGTGGGAGAGACAGAGATGGGCCCTTGGTCGTTTTGGCATTAATCAATGCCAAGTATGTTGGGATTGGATGGAGAAAACTGAGCTCAAAACTTGCACATTAGAAAACTGCTTCCAGGTTGGAGTTGAGGAAAACTGGAAGGAGTCTTCTAAGGTTTCAAAGCTCTTGGACATCTTGGAACAAATTCTTCAGTCAGGTTCTGATGAAAAGTGCATCATTTTCAGTCAGTGGACTTCATTTTTGGATCTCTTGGAGATCTCTATGAAGAGAAGAAATATCGTGTTTCAGAGGATTGATGGCAATCTGGCAACTAGCATGGCAAATTCATCATTGAAAGACAAGCATGCTGCAGCCATTTAG

Protein Analysis

510

Amino Acids

58.02

Weight (kDa)

6.35

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 175 - 226 1.5e-08 SNF2-related domain
zf-RING_UBOX PF13445 365 - 398 9.7e-09 RING-type zinc-finger
zf-C3HC4 PF00097 365 - 411 1.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 365 - 390 1.4e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 365 - 396 6.7e-07 zinc finger of C3HC4-type, RING
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 898
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 2 cut(s) 305, 496
AclWI GGATC 4 cut(s) 601, 692, 1115, 1425
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 7 cut(s) 75, 259, 394, 469, 515, 1356, 1495
AcuI CTGAAG 2 cut(s) 855, 1346
AcvI CACGTG 1 cut(s) 16
AdeI CACNNNGTG 1 cut(s) 1139
AfaI GTAC 2 cut(s) 965, 1128
AfiI CCNNNNNNNGG 1 cut(s) 898
AflII CTTAAG 1 cut(s) 674
AflIII ACRYGT 2 cut(s) 13, 1045
AgsI TTSAA 7 cut(s) 280, 287, 600, 812, 995, 1332, 1507
AhlI ACTAGT 1 cut(s) 335
AjnI CCWGG 1 cut(s) 1287
AjuI GAANNNNNNNTTGG 2 cut(s) 921, 953
AloI GAACNNNNNNTCC 4 cut(s) 98, 130, 1151, 1183
AluBI AGCT 8 cut(s) 55, 114, 402, 581, 614, 839, 1258, 1336
AluI AGCT 8 cut(s) 55, 114, 402, 581, 614, 839, 1258, 1336
Alw21I GWGCWC 4 cut(s) 57, 116, 573, 1260
Alw26I GTCTC 2 cut(s) 244, 1177
AlwI GGATC 4 cut(s) 601, 692, 1115, 1425
AlwNI CAGNNNCTG 1 cut(s) 1373
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 4 cut(s) 84, 192, 734, 1194
ApaI GGGCCC 1 cut(s) 1198
ApeKI GCWGC 3 cut(s) 614, 1520, 1523
ApoI RAATTY 7 cut(s) 75, 259, 394, 469, 515, 1356, 1495
ArsI GACNNNNNNTTYG 2 cut(s) 1396, 1428
AseI ATTAAT 1 cut(s) 1215
Asp700I GAANNNNTTC 1 cut(s) 1356
AspS9I GGNCC 2 cut(s) 1194, 1195
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 3 cut(s) 62, 259, 707
BaeGI GKGCMC 1 cut(s) 1198
BanII GRGCYC 5 cut(s) 57, 116, 124, 1198, 1260
BauI CACGAG 1 cut(s) 109
BbrPI CACGTG 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 1311
Bbv12I GWGCWC 4 cut(s) 57, 116, 573, 1260
BbvI GCAGC 2 cut(s) 601, 1507
BccI CCATC 8 cut(s) 46, 263, 645, 770, 1008, 1185, 1237, 1463
BceAI ACGGC 2 cut(s) 71, 99
BciT130I CCWGG 1 cut(s) 1289
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 244, 1177
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 3 cut(s) 336, 981, 1485
BfmI CTRYAG 2 cut(s) 1072, 1521
BfrI CTTAAG 1 cut(s) 674
BglII AGATCT 1 cut(s) 1428
BisI GCNGC 3 cut(s) 615, 1521, 1524
BlsI GCNGC 3 cut(s) 616, 1522, 1525
BmcAI AGTACT 1 cut(s) 965
Bme1390I CCNGG 2 cut(s) 118, 1289
BmgT120I GGNCC 2 cut(s) 1194, 1195
BmiI GGNNCC 3 cut(s) 186, 667, 1196
BmrFI CCNGG 2 cut(s) 118, 1289
BmsI GCATC 3 cut(s) 519, 847, 1395
BpiI GAAGAC 1 cut(s) 1311
Bpu10I CCTNAGC 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 1156
BpuMI CCSGG 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 1473
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 4 cut(s) 117, 490, 937, 1198
BsaWI WCCGGW 2 cut(s) 181, 289
BsaXI ACNNNNNCTCC 6 cut(s) 98, 128, 1044, 1074, 1151, 1181
Bsc4I CCNNNNNNNGG 1 cut(s) 898
Bse1I ACTGG 3 cut(s) 560, 892, 1313
Bse3DI GCAATG 1 cut(s) 643
Bse8I GATNNNNATC 1 cut(s) 1473
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 1 cut(s) 1289
BseDI CCNNGG 4 cut(s) 117, 490, 937, 1198
BseGI GGATG 2 cut(s) 274, 1248
BseJI GATNNNNATC 1 cut(s) 1473
BseLI CCNNNNNNNGG 1 cut(s) 898
BseMI GCAATG 1 cut(s) 643
BseMII CTCAG 2 cut(s) 269, 1245
BseNI ACTGG 3 cut(s) 560, 892, 1313
BseSI GKGCMC 1 cut(s) 1198
BseX3I CGGCCG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 601, 1507
BsgI GTGCAG 1 cut(s) 1174
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 4 cut(s) 86, 194, 736, 1196
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 4 cut(s) 57, 116, 573, 1260
BsiSI CCGG 3 cut(s) 117, 182, 290
BslFI GGGAC 2 cut(s) 20, 1080
BslI CCNNNNNNNGG 1 cut(s) 898
BsmAI GTCTC 2 cut(s) 244, 1177
BsmFI GGGAC 2 cut(s) 20, 1080
BsnI GGCC 4 cut(s) 86, 194, 736, 1196
Bso31I GGTCTC 1 cut(s) 244
Bsp120I GGGCCC 1 cut(s) 1194
Bsp1286I GDGCHC 6 cut(s) 57, 116, 124, 573, 1198, 1260
Bsp13I TCCGGA 1 cut(s) 181
BspACI CCGC 2 cut(s) 305, 496
BspANI GGCC 4 cut(s) 86, 194, 736, 1196
BspCNI CTCAG 2 cut(s) 268, 1246
BspEI TCCGGA 1 cut(s) 181
BspHI TCATGA 1 cut(s) 1003
BspLI GGNNCC 3 cut(s) 186, 667, 1196
BspMAI CTGCAG 1 cut(s) 1525
BspPI GGATC 4 cut(s) 601, 692, 1115, 1425
BspTI CTTAAG 1 cut(s) 674
BspTNI GGTCTC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 643
BsrI ACTGG 3 cut(s) 560, 892, 1313
BssECI CCNNGG 4 cut(s) 117, 490, 937, 1198
BssSI CACGAG 1 cut(s) 109
BssT1I CCWWGG 3 cut(s) 490, 937, 1198
Bst2BI CACGAG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 1289
Bst4CI ACNGT 2 cut(s) 94, 1090
Bst6I CTCTTC 1 cut(s) 1433
BstAFI CTTAAG 1 cut(s) 674
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 124, 978, 1518
BstDEI CTNAG 4 cut(s) 255, 618, 1254, 1323
BstF5I GGATG 2 cut(s) 274, 1248
BstMAI GTCTC 2 cut(s) 244, 1177
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 3 cut(s) 611, 623, 1110
BstNI CCWGG 1 cut(s) 1289
BstNSI RCATGY 2 cut(s) 1049, 1520
BstSCI CCNGG 2 cut(s) 116, 1287
BstSFI CTRYAG 2 cut(s) 1072, 1521
BstSLI GKGCMC 1 cut(s) 1198
BstV1I GCAGC 2 cut(s) 601, 1507
BstV2I GAAGAC 1 cut(s) 1311
BstX2I RGATCY 3 cut(s) 593, 1417, 1428
BstXI CCANNNNNNTGG 2 cut(s) 441, 1105
BstYI RGATCY 3 cut(s) 593, 1417, 1428
BstZI CGGCCG 1 cut(s) 84
BsuRI GGCC 4 cut(s) 86, 194, 736, 1196
BtsCI GGATG 2 cut(s) 274, 1248
BtsIMutI CAGTG 3 cut(s) 243, 1095, 1406
Cac8I GCNNGC 3 cut(s) 124, 978, 1518
CaiI CAGNNNCTG 1 cut(s) 1373
CciI TCATGA 1 cut(s) 1003
Cfr13I GGNCC 2 cut(s) 1194, 1195
Csp6I GTAC 2 cut(s) 964, 1127
CviAII CATG 7 cut(s) 346, 692, 1004, 1046, 1137, 1489, 1517
CviQI GTAC 2 cut(s) 964, 1127
DdeI CTNAG 4 cut(s) 255, 618, 1254, 1323
DraIII CACNNNGTG 1 cut(s) 1139
EaeI YGGCCR 1 cut(s) 84
EagI CGGCCG 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 1433
EarI CTCTTC 1 cut(s) 1433
Ecl136II GAGCTC 3 cut(s) 55, 114, 1258
EclXI CGGCCG 1 cut(s) 84
Eco130I CCWWGG 3 cut(s) 490, 937, 1198
Eco24I GRGCYC 5 cut(s) 57, 116, 124, 1198, 1260
Eco31I GGTCTC 1 cut(s) 244
Eco52I CGGCCG 1 cut(s) 84
Eco53kI GAGCTC 3 cut(s) 55, 114, 1258
Eco57I CTGAAG 2 cut(s) 855, 1346
Eco72I CACGTG 1 cut(s) 16
EcoICRI GAGCTC 3 cut(s) 55, 114, 1258
EcoO109I RGGNCCY 1 cut(s) 1195
EcoRI GAATTC 1 cut(s) 469
EcoRII CCWGG 1 cut(s) 1287
EcoT14I CCWWGG 3 cut(s) 490, 937, 1198
EcoT38I GRGCYC 5 cut(s) 57, 116, 124, 1198, 1260
ErhI CCWWGG 3 cut(s) 490, 937, 1198
FaeI CATG 7 cut(s) 349, 695, 1007, 1049, 1140, 1492, 1520
FaqI GGGAC 2 cut(s) 20, 1080
FatI CATG 7 cut(s) 345, 691, 1003, 1045, 1136, 1488, 1516
FauI CCCGC 1 cut(s) 298
FauNDI CATATG 2 cut(s) 1100, 1117
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 615, 1521, 1524
FokI GGATG 2 cut(s) 281, 1255
FriOI GRGCYC 5 cut(s) 57, 116, 124, 1198, 1260
Fsp4HI GCNGC 3 cut(s) 615, 1521, 1524
FspBI CTAG 3 cut(s) 336, 981, 1485
GluI GCNGC 3 cut(s) 615, 1521, 1524
HaeIII GGCC 4 cut(s) 86, 194, 736, 1196
HapII CCGG 3 cut(s) 117, 182, 290
Hin1II CATG 7 cut(s) 349, 695, 1007, 1049, 1140, 1492, 1520
HincII GTYRAC 2 cut(s) 553, 660
HindII GTYRAC 2 cut(s) 553, 660
HinfI GANTC 6 cut(s) 133, 178, 987, 1007, 1027, 1316
HpaII CCGG 3 cut(s) 117, 182, 290
HphI GGTGA 3 cut(s) 62, 259, 707
Hpy166II GTNNAC 3 cut(s) 553, 660, 1404
Hpy188III TCNNGA 5 cut(s) 71, 97, 182, 803, 1004
Hpy8I GTNNAC 3 cut(s) 553, 660, 1404
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 4 cut(s) 184, 396, 754, 1306
HpyCH4III ACNGT 2 cut(s) 94, 1090
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 8 cut(s) 153, 241, 532, 1113, 1155, 1269, 1386, 1523
HpyF10VI GCNNNNNNNGC 3 cut(s) 611, 623, 1110
HpyF3I CTNAG 4 cut(s) 255, 618, 1254, 1323
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 7 cut(s) 349, 695, 1007, 1049, 1140, 1492, 1520
Kpn2I TCCGGA 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 138
LmnI GCTCC 2 cut(s) 119, 184
Lsp1109I GCAGC 2 cut(s) 601, 1507
LweI GCATC 3 cut(s) 519, 847, 1395
MaeI CTAG 3 cut(s) 336, 981, 1485
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 88
MboII GAAGA 9 cut(s) 588, 762, 788, 908, 996, 1311, 1352, 1450, 1455
MflI RGATCY 3 cut(s) 593, 1417, 1428
MhlI GDGCHC 6 cut(s) 57, 116, 124, 573, 1198, 1260
MlyI GAGTC 2 cut(s) 127, 1325
MmeI TCCRAC 5 cut(s) 104, 336, 1030, 1060, 1273
MroI TCCGGA 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 1356
MseI TTAA 6 cut(s) 483, 675, 746, 867, 956, 1215
MslI CAYNNNNRTG 1 cut(s) 924
MspCI CTTAAG 1 cut(s) 674
MspI CCGG 3 cut(s) 117, 182, 290
MspR9I CCNGG 2 cut(s) 118, 1289
MvaI CCWGG 1 cut(s) 1289
MwoI GCNNNNNNNGC 3 cut(s) 611, 623, 1110
NciI CCSGG 1 cut(s) 118
NdeI CATATG 2 cut(s) 1100, 1117
NlaIII CATG 7 cut(s) 349, 695, 1007, 1049, 1140, 1492, 1520
NlaIV GGNNCC 3 cut(s) 186, 667, 1196
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 2 cut(s) 1049, 1520
PaeI GCATGC 1 cut(s) 1520
PagI TCATGA 1 cut(s) 1003
PciI ACATGT 1 cut(s) 1045
PdmI GAANNNNTTC 1 cut(s) 1356
PfeI GAWTC 4 cut(s) 178, 987, 1007, 1027
PflMI CCANNNNNTGG 1 cut(s) 898
PkrI GCNGC 3 cut(s) 616, 1522, 1525
PleI GAGTC 2 cut(s) 127, 1324
PmaCI CACGTG 1 cut(s) 16
PmlI CACGTG 1 cut(s) 16
PpsI GAGTC 2 cut(s) 127, 1324
Ppu21I YACGTR 1 cut(s) 16
PscI ACATGT 1 cut(s) 1045
PshBI ATTAAT 1 cut(s) 1215
Psp124BI GAGCTC 3 cut(s) 57, 116, 1260
Psp6I CCWGG 1 cut(s) 1287
PspCI CACGTG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 1287
PspN4I GGNNCC 3 cut(s) 186, 667, 1196
PspOMI GGGCCC 1 cut(s) 1194
PspPI GGNCC 2 cut(s) 1194, 1195
PstI CTGCAG 1 cut(s) 1525
PstNI CAGNNNCTG 1 cut(s) 1373
PsuI RGATCY 3 cut(s) 593, 1417, 1428
RsaI GTAC 2 cut(s) 965, 1128
RsaNI GTAC 2 cut(s) 964, 1127
RseI CAYNNNNRTG 1 cut(s) 924
SacI GAGCTC 3 cut(s) 57, 116, 1260
SaqAI TTAA 6 cut(s) 483, 675, 746, 867, 956, 1215
SatI GCNGC 3 cut(s) 615, 1521, 1524
Sau96I GGNCC 2 cut(s) 1194, 1195
ScaI AGTACT 1 cut(s) 965
SchI GAGTC 2 cut(s) 127, 1325
ScrFI CCNGG 2 cut(s) 118, 1289
SduI GDGCHC 6 cut(s) 57, 116, 124, 573, 1198, 1260
SfaNI GCATC 3 cut(s) 519, 847, 1395
SfcI CTRYAG 2 cut(s) 1072, 1521
SmiMI CAYNNNNRTG 1 cut(s) 924
SmlI CTYRAG 2 cut(s) 674, 1171
SmoI CTYRAG 2 cut(s) 674, 1171
SpeI ACTAGT 1 cut(s) 335
SphI GCATGC 1 cut(s) 1520
SsiI CCGC 2 cut(s) 305, 496
SspI AATATT 1 cut(s) 283
SspMI CTAG 3 cut(s) 336, 981, 1485
SstI GAGCTC 3 cut(s) 57, 116, 1260
StyD4I CCNGG 2 cut(s) 116, 1287
StyI CCWWGG 3 cut(s) 490, 937, 1198
TaaI ACNGT 2 cut(s) 94, 1090
TaiI ACGT 1 cut(s) 18
TaqI TCGA 3 cut(s) 131, 332, 573
TatI WGTACW 2 cut(s) 963, 1126
TfiI GAWTC 4 cut(s) 178, 987, 1007, 1027
Tru1I TTAA 6 cut(s) 483, 675, 746, 867, 956, 1215
Tru9I TTAA 6 cut(s) 483, 675, 746, 867, 956, 1215
TscAI CASTG 3 cut(s) 243, 1095, 1406
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 3 cut(s) 614, 1520, 1523
Tsp45I GTSAC 1 cut(s) 88
TspGWI ACGGA 1 cut(s) 873
TspRI CASTG 3 cut(s) 243, 1095, 1406
Van91I CCANNNNNTGG 1 cut(s) 898
Vha464I CTTAAG 1 cut(s) 674
VspI ATTAAT 1 cut(s) 1215
XapI RAATTY 7 cut(s) 75, 259, 394, 469, 515, 1356, 1495
XceI RCATGY 2 cut(s) 1049, 1520
XmnI GAANNNNTTC 1 cut(s) 1356
XspI CTAG 3 cut(s) 336, 981, 1485
ZrmI AGTACT 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.