Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

6923797 .. 6924869

Gene Structure 1073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36430

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAGCAACTGGGCATGAAATTAATTCAGACGCCTTATGAAAATGGTGATCCAAGAGGATTGAGATTGATAAAGGACATTTTGAGGCCATTGATGTTAAGAAGAACAAAGGAGGCAAAGGAGAAAGATGGAAGCCCCATATTCATACTTCCTCCTGACGTTGAAACTATTGAATGTCATCAGTCTGAAGCTGAACAAGAGTTCTATGATGCCCTTTTTAAGAGATCAAAAGTTCAGTTTGACCAGTTTGTGGCACAAGGCAAGGTTCTTCACAACTATGCACATGCCCTTGGGCTATTGCTTCGTTTAAGGCAGTGTTGCAACCACCCATTTTTTGTTTCGAGTCCGCATGATTCACAAAACTCTGCAGACTTGGACAAGCCTGCTAGAAGATTCCTTGAAACCCATCATGATTCTCCAAGTTCAGATCAGATTCTCCCCACCCAATCACATGTAGGAGAGGTTGTTGAGGGTATCCATCGGTTGAAAATACTGTGTGTCCCATATGCTTTGATTGCACATATGATCCTGTACTTACACCATGTGGACATAAGATGTGCAGGAAGTGTCTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

192

Amino Acids

21.9

Weight (kDa)

6.63

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	7 - 111	5.6e-10	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	250
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	2 cut(s)	44, 520
AcuI	CTGAAG	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	32
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	164, 173, 401, 487
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
AlwI	GGATC	2 cut(s)	44, 520
AoxI	GGCC	1 cut(s)	86
AseI	ATTAAT	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	59
BccI	CCATC	3 cut(s)	122, 414, 486
BciVI	GTATCC	1 cut(s)	485
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	485
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	2 cut(s)	15, 244
BseDI	CCNNGG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseNI	ACTGG	2 cut(s)	15, 244
BsgI	GTGCAG	1 cut(s)	579
BshFI	GGCC	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	88
Bsp143I	GATC	4 cut(s)	49, 224, 427, 525
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	2 cut(s)	44, 520
BsrI	ACTGG	2 cut(s)	15, 244
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	4 cut(s)	49, 224, 427, 525
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	495
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	384
BstKTI	GATC	4 cut(s)	52, 227, 430, 528
BstMBI	GATC	4 cut(s)	49, 224, 427, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNSI	RCATGY	2 cut(s)	287, 455
BstSFI	CTRYAG	1 cut(s)	366
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	320
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	1 cut(s)	409
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	6 cut(s)	16, 284, 350, 410, 452, 542
CviJI	RGCY	5 cut(s)	88, 135, 191, 295, 382
CviKI_1	RGCY	5 cut(s)	88, 135, 191, 295, 382
CviQI	GTAC	1 cut(s)	532
DpnI	GATC	4 cut(s)	51, 226, 429, 527
DpnII	GATC	4 cut(s)	49, 224, 427, 525
DraIII	CACNNNGTG	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	6 cut(s)	19, 287, 353, 413, 455, 545
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	6 cut(s)	15, 283, 349, 409, 451, 541
FauNDI	CATATG	2 cut(s)	505, 522
FspBI	CTAG	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	88
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	6 cut(s)	19, 287, 353, 413, 455, 545
HinfI	GANTC	5 cut(s)	343, 353, 393, 413, 433
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	4 cut(s)	30, 187, 427, 432
Hpy188III	TCNNGA	3 cut(s)	155, 410, 576
Hpy8I	GTNNAC	1 cut(s)	547
HpyCH4III	ACNGT	1 cut(s)	495
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	5 cut(s)	281, 321, 368, 518, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	6 cut(s)	19, 287, 353, 413, 455, 545
Kzo9I	GATC	4 cut(s)	49, 224, 427, 525
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	168, 257, 396, 542, 546
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	159
MalI	GATC	4 cut(s)	51, 226, 429, 527
MboI	GATC	4 cut(s)	49, 224, 427, 525
MboII	GAAGA	3 cut(s)	114, 260, 402
MluCI	AATT	2 cut(s)	20, 24
MlyI	GAGTC	1 cut(s)	352
MnlI	CCTC	6 cut(s)	50, 78, 106, 162, 454, 463
MseI	TTAA	4 cut(s)	23, 98, 219, 308
MslI	CAYNNNNRTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	515
NdeI	CATATG	2 cut(s)	505, 522
NdeII	GATC	4 cut(s)	49, 224, 427, 525
NlaIII	CATG	6 cut(s)	19, 287, 353, 413, 455, 545
NspI	RCATGY	2 cut(s)	287, 455
PagI	TCATGA	1 cut(s)	409
PciI	ACATGT	1 cut(s)	451
PfeI	GAWTC	4 cut(s)	353, 393, 413, 433
PflMI	CCANNNNNTGG	1 cut(s)	250
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
PscI	ACATGT	1 cut(s)	451
PshBI	ATTAAT	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	370
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	4 cut(s)	23, 98, 219, 308
Sau3AI	GATC	4 cut(s)	49, 224, 427, 525
SchI	GAGTC	1 cut(s)	352
SetI	ASST	4 cut(s)	162, 193, 267, 465
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	20, 24
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	495
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	341
TasI	AATT	2 cut(s)	20, 24
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	4 cut(s)	353, 393, 413, 433
Tru1I	TTAA	4 cut(s)	23, 98, 219, 308
Tru9I	TTAA	4 cut(s)	23, 98, 219, 308
TscAI	CASTG	1 cut(s)	320
TspDTI	ATGAA	3 cut(s)	32, 54, 133
TspRI	CASTG	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	250
VspI	ATTAAT	1 cut(s)	23
XceI	RCATGY	2 cut(s)	287, 455
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.