Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004862.1

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Forward (+)

96548 .. 96997

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004862.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggatacagaacacgtggctgatcggcacaaagtcccatcagttatcggtgagcccaccaattccgatcaagaaattccgacggccgtgacggttaagcggacgaatacaagctccggggctcgcgtttcgactcttatcaagcaagagtgcattgaggattttgatgaagttgcggaaagtcgaagcactttgattccggagcctaaggtcaacagggtaaagaaggaagttcctgactgtgaactggtgtcagtgcaacaggtgagacctcagaatttggaggatggcgatttcaagattgagccggattggttcttggtgggaagcacatcggtttctgcggtttcgactagtaaaggcatgaaattgttggacaatgagattgttcatctctcttttccttcctcaaattccagctacaaaacccaatggattgttcgtttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

149

Amino Acids

16.62

Weight (kDa)

5.08

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	3 cut(s)	100, 176, 344
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	3 cut(s)	75, 277, 412
AcvI	CACGTG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	298
AhlI	ACTAGT	1 cut(s)	353
AjuI	GAANNNNNNNTTGG	1 cut(s)	423
AluBI	AGCT	2 cut(s)	114, 420
AluI	AGCT	2 cut(s)	114, 420
Alw26I	GTCTC	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	1 cut(s)	84
ApoI	RAATTY	3 cut(s)	75, 277, 412
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	62, 277
AxyI	CCTNAGG	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	57, 124
BbrPI	CACGTG	1 cut(s)	16
BccI	CCATC	2 cut(s)	46, 281
BceAI	ACGGC	2 cut(s)	71, 99
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	262
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	2 cut(s)	354, 448
Bme1390I	CCNGG	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	252
Bse21I	CCTNAGG	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	252
BseX3I	CGGCCG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	87
BsiSI	CCGG	3 cut(s)	117, 200, 308
BslFI	GGGAC	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	57, 124
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	22, 67
BspACI	CCGC	3 cut(s)	100, 176, 344
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	286
BspEI	TCCGGA	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	22, 67
Bst4CI	ACNGT	2 cut(s)	94, 242
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	207, 273
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	25, 70
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	2 cut(s)	22, 67
BstMCI	CGRYCG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	116
BstUI	CGCG	1 cut(s)	126
BstZI	CGGCCG	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	124
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	8 cut(s)	20, 55, 86, 114, 122, 205, 307, 420
CviKI_1	RGCY	8 cut(s)	20, 55, 86, 114, 122, 205, 307, 420
DdeI	CTNAG	2 cut(s)	207, 273
DpnI	GATC	2 cut(s)	24, 69
DpnII	GATC	2 cut(s)	22, 67
EaeI	YGGCCR	1 cut(s)	84
EagI	CGGCCG	1 cut(s)	84
EclXI	CGGCCG	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	57, 124
Eco31I	GGTCTC	1 cut(s)	262
Eco52I	CGGCCG	1 cut(s)	84
Eco72I	CACGTG	1 cut(s)	16
Eco81I	CCTNAGG	1 cut(s)	207
EcoT38I	GRGCYC	2 cut(s)	57, 124
FaeI	CATG	1 cut(s)	367
FaiI	YATR	1 cut(s)	365
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	363
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	2 cut(s)	57, 124
FspBI	CTAG	2 cut(s)	354, 448
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	3 cut(s)	117, 200, 308
Hin1II	CATG	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	133, 196
HpaII	CCGG	3 cut(s)	117, 200, 308
HphI	GGTGA	2 cut(s)	62, 277
Hpy166II	GTNNAC	2 cut(s)	214, 245
Hpy188I	TCNGA	3 cut(s)	67, 81, 276
Hpy188III	TCNNGA	4 cut(s)	71, 200, 236, 298
Hpy8I	GTNNAC	2 cut(s)	214, 245
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	220, 414
HpyCH4III	ACNGT	2 cut(s)	94, 242
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	153, 259
HpyF3I	CTNAG	2 cut(s)	207, 273
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	367
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	22, 67
LmnI	GCTCC	2 cut(s)	119, 202
LpnPI	CCDG	8 cut(s)	130, 202, 213, 233, 248, 249, 321, 430
MaeI	CTAG	2 cut(s)	354, 448
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	24, 69
MboI	GATC	2 cut(s)	22, 67
MhlI	GDGCHC	2 cut(s)	57, 124
MluCI	AATT	5 cut(s)	61, 75, 277, 368, 412
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	104, 354
MnlI	CCTC	4 cut(s)	151, 277, 282, 418
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	1 cut(s)	96
MspI	CCGG	3 cut(s)	117, 200, 308
MspR9I	CCNGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	126
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	2 cut(s)	22, 67
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	127
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	16
PspCI	CACGTG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	22, 67
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	57, 124
SetI	ASST	6 cut(s)	18, 116, 213, 267, 274, 422
SpeI	ACTAGT	1 cut(s)	353
Sse9I	AATT	5 cut(s)	61, 75, 277, 368, 412
SsiI	CCGC	3 cut(s)	100, 176, 344
SspMI	CTAG	2 cut(s)	354, 448
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	94, 242
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	131, 184, 350
TasI	AATT	5 cut(s)	61, 75, 277, 368, 412
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	3 cut(s)	183, 380, 380
TspRI	CASTG	1 cut(s)	261
XapI	RAATTY	3 cut(s)	75, 277, 412
XspI	CTAG	2 cut(s)	354, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.