Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000759

Physical Location & Seq

Genomic Coordinates Reverse (-)

7100678 .. 7102144

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36455

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTGCAGGGAGTGTCTGTTCTTGAGGTGGGAGAGACAAAAAAGATGGCACCCCCTTGATCGTTTTGGCATTAATCAATGCCAGGTATGTTGGGAATGGATGGACAAAACTGAGCTCAAAACTTGCACATTAGAAAACTGTTTCCAGGTTGGAGTCGAGGAAAACTGGAAGGAGTCTTCTAAGGTTTCAAAGCTCTTGAACATCTTGGAACAAATTCTTCAGTCAGGTTCTGATGAAAAGTGCATCATTTTCAGTCAGTGGCCTTCATTTTTGGATCTCTTGGAGATCTCTATGAAGAGAAGAAATATCGTGTTTCAGAGGATTGATGACAATCTGTCGGAGGATAAGAGGGATAGGGTTTTGAAGGACTTCAGCCTTTACCGCACCAAAGATAAACAGGACTTGTTGATATGTTTAAGAACTGAAGCTGGTTACGATTTAAGTGCAGCATCTAATATCTTTTTAATGGATCCATGGTGGAATCCACCCGCTGAGGAGAAAATACTAATGAGAATTATACGCAGTAGAAAAGATGGAACTGTTGTTAGAAGATTTATTGTCAAGGACACAGTGGAGGAACGCATGCAACAGCTTCAGTCTAGAAAGCAGCAAATGAGTGTGGAAGTTGTCCCTGTTGAGAAAGATCGATCGGCCAGAATTGAGGACCTCAAAATGATTTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

228

Amino Acids

27.43

Weight (kDa)

8.39

Isoelectric Point (pI)

72.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	66 - 175	8.9e-14	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43530
fragaria_vesca	FvH4_4g03130 FvH4_4g03131 FvH4_4g03132 FvH4_4g03180 FvH4_4g03180 FvH4_4g03180
malus_domestica	MD16G1213200.v1.1
prunus_persica	Prupe.1G034800_v2.0.a1
pyrus_communis	pycom16g17900 pycom16g17910
rosa_chinensis	RchiOBHm_Chr4g0391421 RchiOBHm_Chr4g0391471 RchiOBHm_Chr4g0391481 RchiOBHm_Chr4g0391501 RchiOBHm_Chr4g0391631 RchiOBHm_Chr4g0391741 RchiOBHm_Chr4g0391801
rosa_laevigata	RLG00000009859 RLG00000009860 RLG00000009864 RLG00000009865 RLG00000009866 RLG00000028882 RLG00000034555
rosa_multiflora	Rmu_sc0000383.1_g000032 Rmu_sc0001174.1_g000001 Rmu_sc0001174.1_g000027 Rmu_sc0001174.1_g000030 Rmu_sc0004862.1_g000001 Rmu_sc0004862.1_g000022 Rmu_sc0007466.1_g000001 Rmu_sc0021280.1_g000001 Rmu_sc0023741.1_g000005
rosa_roxburghii	Rroxscaffold_5G00337130 Rroxscaffold_5G00337140 Rroxscaffold_5G00337170 Rroxscaffold_7G00197540
rosa_rugosa	Rorug03G0335900 Rorug03G0336000 Rorug03G0336100 Rorug03G0336400
rosa_samantha	Rh4AG037500 Rh4AG037600 Rh4AG037700 Rh4AG038300 Rh4AG038400 Rh4AG038500 Rh4AG038800 Rh4BG031800 Rh4BG032300 Rh4BG032500 Rh4BG032600 Rh4BG033000 Rh4BG137700 Rh4CG040500 Rh4CG040700 Rh4CG040800 Rh4CG041400 Rh4CG269500 Rh4DG035000 Rh4DG035100 Rh4DG035200 Rh4DG036200 Rh6DG188300
rosa_wichuraiana	Rw4G002920 Rw4G002930 Rw4G002970 Rw4G003010 Rw5G048340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	48
AciI	CCGC	2 cut(s)	382, 489
AclWI	GGATC	3 cut(s)	282, 464, 477
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	4 cut(s)	203, 355, 444, 578
AgsI	TTSAA	3 cut(s)	189, 199, 364
AhdI	GACNNNNNGTC	1 cut(s)	334
AjnI	CCWGG	2 cut(s)	81, 144
AloI	GAACNNNNNNTCC	1 cut(s)	34
AluBI	AGCT	4 cut(s)	115, 193, 428, 592
AluI	AGCT	4 cut(s)	115, 193, 428, 592
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	3 cut(s)	282, 464, 477
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	2 cut(s)	260, 651
ApeKI	GCWGC	2 cut(s)	446, 607
ApoI	RAATTY	1 cut(s)	213
AseI	ATTAAT	1 cut(s)	72
Asp700I	GAANNNNTTC	2 cut(s)	213, 368
AspS9I	GGNCC	1 cut(s)	664
AvaII	GGWCC	1 cut(s)	664
BamHI	GGATCC	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	458, 619
BccI	CCATC	3 cut(s)	39, 94, 527
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	2 cut(s)	83, 146
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	600
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	2 cut(s)	447, 608
BlsI	GCNGC	2 cut(s)	448, 609
Bme1390I	CCNGG	2 cut(s)	83, 146
Bme18I	GGWCC	1 cut(s)	664
BmeRI	GACNNNNNGTC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	664
BmiI	GGNNCC	2 cut(s)	50, 471
BmrFI	CCNGG	2 cut(s)	83, 146
BmsI	GCATC	2 cut(s)	252, 458
BpiI	GAAGAC	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	43
Bsa29I	ATCGAT	1 cut(s)	646
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	473
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	83, 146
BseCI	ATCGAT	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	102, 483
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	2 cut(s)	458, 619
BsgI	GTGCAG	2 cut(s)	25, 465
Bsh1285I	CGRYCG	1 cut(s)	650
BshFI	GGCC	2 cut(s)	262, 653
BshNI	GGYRCC	1 cut(s)	48
BshVI	ATCGAT	1 cut(s)	646
BsiEI	CGRYCG	1 cut(s)	650
BsiHKAI	GWGCWC	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	614
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	262, 653
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	6 cut(s)	58, 274, 285, 469, 643, 647
Bsp19I	CCATGG	1 cut(s)	473
BspACI	CCGC	2 cut(s)	382, 489
BspANI	GGCC	2 cut(s)	262, 653
BspCNI	CTCAG	2 cut(s)	103, 484
BspDI	ATCGAT	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	50, 471
BspPI	GGATC	3 cut(s)	282, 464, 477
BspT107I	GGYRCC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	6 cut(s)	58, 274, 285, 469, 643, 647
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	2 cut(s)	83, 146
Bst4CI	ACNGT	3 cut(s)	140, 541, 571
Bst6I	CTCTTC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	584
BstDEI	CTNAG	3 cut(s)	111, 180, 492
BstDSI	CCRYGG	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	6 cut(s)	61, 277, 288, 472, 646, 650
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	6 cut(s)	58, 274, 285, 469, 643, 647
BstMCI	CGRYCG	1 cut(s)	650
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNI	CCWGG	2 cut(s)	83, 146
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	2 cut(s)	81, 144
BstV1I	GCAGC	2 cut(s)	458, 619
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	3 cut(s)	274, 285, 469
BstYI	RGATCY	3 cut(s)	274, 285, 469
Bsu15I	ATCGAT	1 cut(s)	646
BsuRI	GGCC	2 cut(s)	262, 653
BsuTUI	ATCGAT	1 cut(s)	646
BtgI	CCRYGG	1 cut(s)	473
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	263, 576
Cac8I	GCNNGC	1 cut(s)	584
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	664
ClaI	ATCGAT	1 cut(s)	646
CviAII	CATG	2 cut(s)	474, 583
CviJI	RGCY	7 cut(s)	115, 193, 262, 375, 428, 592, 653
CviKI_1	RGCY	7 cut(s)	115, 193, 262, 375, 428, 592, 653
DdeI	CTNAG	3 cut(s)	111, 180, 492
DpnI	GATC	6 cut(s)	60, 276, 287, 471, 645, 649
DpnII	GATC	6 cut(s)	58, 274, 285, 469, 643, 647
DriI	GACNNNNNGTC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	1 cut(s)	290
Eam1105I	GACNNNNNGTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	664
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	4 cut(s)	203, 355, 444, 578
EcoICRI	GAGCTC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	81, 144
EcoT14I	CCWWGG	1 cut(s)	473
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	2 cut(s)	477, 586
FaiI	YATR	6 cut(s)	88, 293, 412, 475, 518, 584
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	2 cut(s)	473, 582
FauI	CCCGC	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	447, 608
FokI	GGATG	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	447, 608
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	2 cut(s)	447, 608
HaeIII	GGCC	2 cut(s)	262, 653
Hin1II	CATG	2 cut(s)	477, 586
HinfI	GANTC	3 cut(s)	153, 173, 481
Hpy188I	TCNGA	4 cut(s)	232, 318, 340, 683
Hpy188III	TCNNGA	3 cut(s)	22, 196, 600
HpyAV	CCTTC	3 cut(s)	163, 273, 358
HpyCH4III	ACNGT	3 cut(s)	140, 541, 571
HpyCH4V	TGCA	5 cut(s)	6, 126, 243, 446, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpyF3I	CTNAG	3 cut(s)	111, 180, 492
Hsp92II	CATG	2 cut(s)	477, 586
Kzo9I	GATC	6 cut(s)	58, 274, 285, 469, 643, 647
Lsp1109I	GCAGC	2 cut(s)	458, 619
LweI	GCATC	2 cut(s)	252, 458
MaeI	CTAG	1 cut(s)	600
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	6 cut(s)	60, 276, 287, 471, 645, 649
MboI	GATC	6 cut(s)	58, 274, 285, 469, 643, 647
MboII	GAAGA	5 cut(s)	168, 209, 307, 312, 561
MflI	RGATCY	3 cut(s)	274, 285, 469
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	3 cut(s)	213, 513, 657
MlyI	GAGTC	2 cut(s)	162, 182
MmeI	TCCRAC	2 cut(s)	130, 318
MnlI	CCTC	9 cut(s)	18, 151, 312, 334, 342, 487, 568, 655, 677
MroXI	GAANNNNTTC	2 cut(s)	213, 368
MseI	TTAA	4 cut(s)	72, 416, 440, 464
MspA1I	CMGCKG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	83, 146
MvaI	CCWGG	2 cut(s)	83, 146
MwoI	GCNNNNNNNGC	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	473
NdeII	GATC	6 cut(s)	58, 274, 285, 469, 643, 647
NlaIII	CATG	2 cut(s)	477, 586
NlaIV	GGNNCC	2 cut(s)	50, 471
NspI	RCATGY	1 cut(s)	586
PaeI	GCATGC	1 cut(s)	586
PdmI	GAANNNNTTC	2 cut(s)	213, 368
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	2 cut(s)	448, 609
Ple19I	CGATCG	1 cut(s)	650
PleI	GAGTC	2 cut(s)	161, 181
PpsI	GAGTC	2 cut(s)	161, 181
PpuMI	RGGWCCY	1 cut(s)	664
PshBI	ATTAAT	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	664
Psp6I	CCWGG	2 cut(s)	81, 144
PspGI	CCWGG	2 cut(s)	81, 144
PspN4I	GGNNCC	2 cut(s)	50, 471
PspPI	GGNCC	1 cut(s)	664
PspPPI	RGGWCCY	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	3 cut(s)	274, 285, 469
PvuI	CGATCG	1 cut(s)	650
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	4 cut(s)	72, 416, 440, 464
SatI	GCNGC	2 cut(s)	447, 608
Sau3AI	GATC	6 cut(s)	58, 274, 285, 469, 643, 647
Sau96I	GGNCC	1 cut(s)	664
SchI	GAGTC	2 cut(s)	162, 182
ScrFI	CCNGG	2 cut(s)	83, 146
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	252, 458
SinI	GGWCC	1 cut(s)	664
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SphI	GCATGC	1 cut(s)	586
Sse9I	AATT	3 cut(s)	213, 513, 657
SsiI	CCGC	2 cut(s)	382, 489
SspMI	CTAG	1 cut(s)	600
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	81, 144
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	3 cut(s)	140, 541, 571
TaqI	TCGA	2 cut(s)	156, 646
TasI	AATT	3 cut(s)	213, 513, 657
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	4 cut(s)	72, 416, 440, 464
Tru9I	TTAA	4 cut(s)	72, 416, 440, 464
TscAI	CASTG	2 cut(s)	263, 576
TseI	GCWGC	2 cut(s)	446, 607
TspDTI	ATGAA	3 cut(s)	249, 255, 308
TspRI	CASTG	2 cut(s)	263, 576
VpaK11BI	GGWCC	1 cut(s)	664
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	1 cut(s)	213
XbaI	TCTAGA	1 cut(s)	599
XceI	RCATGY	1 cut(s)	586
XmnI	GAANNNNTTC	2 cut(s)	213, 368
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.