Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

5002829 .. 5003679

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04431.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCGCAGATTCCTCAACATTACCGTCTGGGTGGACTAGCTTTAGCAGCAACTTTTTGCCAAACCAGTCTTCCTGCAGCACTTGTTCTTTTTATTTCAGTTGTATTCCAAGGTTGCTGGTTTATGAACATGGGATTCATGCTCTGGGTTCCTAAGCTTGTTCCAAAGGGTTGTGTTGTCAGTTTCATTGAGGGTAGCATTGATAACGTGCTTGGATCATCAGTAACTTGTAGATCAAGTGAGTCTGAATTTAGAGCAAGGGCATTGGCCAACTTGCAGTTTAGTTGGATACTTTCTGGGATTTTGATATTCATAGCATGTACATGCCTGAAGTTTGCTGGCAAATGCATTCAAAGAGACCTGTCTATAGAGAGTATGAGCAACTCCATAGTAGCAGAGGAGCAGATGTCCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

139

Amino Acids

15.14

Weight (kDa)

6.55

Isoelectric Point (pI)

63.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	14 - 109	7.6e-26	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	353
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	2 cut(s)	41, 157
AluI	AGCT	2 cut(s)	41, 157
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	47, 77
ApoI	RAATTY	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	59, 89
BciVI	GTATCC	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	2 cut(s)	75, 366
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	2 cut(s)	48, 78
BlsI	GCNGC	2 cut(s)	49, 79
BmiI	GGNNCC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	109
BsaXI	ACNNNNNCTCC	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	2 cut(s)	59, 89
BshFI	GGCC	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	351
Bsp1407I	TGTACA	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	215, 233
BspANI	GGCC	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	150
BspMAI	CTGCAG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	351
BsrGI	TGTACA	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	215, 233
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	153
BstKTI	GATC	2 cut(s)	218, 236
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	2 cut(s)	215, 233
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	2 cut(s)	321, 327
BstSFI	CTRYAG	2 cut(s)	75, 366
BstV1I	GCAGC	2 cut(s)	59, 89
BstV2I	GAAGAC	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	4 cut(s)	130, 139, 318, 324
CviJI	RGCY	3 cut(s)	41, 157, 269
CviKI_1	RGCY	3 cut(s)	41, 157, 269
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	2 cut(s)	217, 235
DpnII	GATC	2 cut(s)	215, 233
EaeI	YGGCCR	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	4 cut(s)	133, 142, 321, 327
FaiI	YATR	9 cut(s)	125, 131, 140, 314, 319, 325, 368, 377, 389
FatI	CATG	4 cut(s)	129, 138, 317, 323
Fnu4HI	GCNGC	2 cut(s)	48, 78
Fsp4HI	GCNGC	2 cut(s)	48, 78
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	2 cut(s)	48, 78
HaeIII	GGCC	1 cut(s)	269
Hin1II	CATG	4 cut(s)	133, 142, 321, 327
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	3 cut(s)	10, 135, 242
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	247, 412
Hpy8I	GTNNAC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	77, 277, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	4 cut(s)	133, 142, 321, 327
Kzo9I	GATC	2 cut(s)	215, 233
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	9 cut(s)	14, 79, 87, 103, 130, 282, 324, 341, 374
Lsp1109I	GCAGC	2 cut(s)	59, 89
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	217, 235
MboI	GATC	2 cut(s)	215, 233
MboII	GAAGA	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	1 cut(s)	248
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	3 cut(s)	24, 184, 391
Mox20I	TGGCCA	1 cut(s)	269
Mph1103I	ATGCAT	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	269
MslI	CAYNNNNRTG	1 cut(s)	322
Msp20I	TGGCCA	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	2 cut(s)	215, 233
NlaIII	CATG	4 cut(s)	133, 142, 321, 327
NlaIV	GGNNCC	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	350
NspI	RCATGY	2 cut(s)	321, 327
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	10, 135
PkrI	GCNGC	2 cut(s)	49, 79
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	322
SatI	GCNGC	2 cut(s)	48, 78
Sau3AI	GATC	2 cut(s)	215, 233
SchI	GAGTC	1 cut(s)	251
SetI	ASST	5 cut(s)	43, 115, 159, 210, 363
SfcI	CTRYAG	2 cut(s)	75, 366
SmiMI	CAYNNNNRTG	1 cut(s)	322
Sse9I	AATT	1 cut(s)	248
SspMI	CTAG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	210
TasI	AATT	1 cut(s)	248
TatI	WGTACW	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	10, 135
TseI	GCWGC	2 cut(s)	47, 77
TspDTI	ATGAA	4 cut(s)	127, 140, 175, 301
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	2 cut(s)	321, 327
XspI	CTAG	1 cut(s)	38
Zsp2I	ATGCAT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.