Rroxscaffold_2G00119950

Belongs to the helicase family. Dicer subfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
52047386 .. 52050342
2957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119950.1

Sequence Viewer

Length: 348 bp
ATGGTCCAGTTGACAACTATAGCTATGCAGAGCAAAGATTGCCGTAGGTTGTATCAATTGGAACTGTGTATGAAAGATTTGGAGGAGAACATAATTGTCTATCTGGAAACTGGTTGTGGAAAGACCCACATAGCCGTGTTGCCTATGTATGAACCAGTTGATACTCAAACCTCAGAAGGACATGTGTGTTCTGGATCAAATTGCTCCCAATGGATTATTGCAATAGAGAGTTTGAAGCCTGACATGTTTCTAAAGAAGATGGAGAGAGAGGTTAGAAGAAGAGGAAGAGGAAGAGGAGTCACTGAGATGTCCCAGCTAGTGTCACAGAATAGGCTCTTTGCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006351 GO:0006353 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009798 GO:0009888 GO:0009892 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010050 GO:0010073 GO:0010074 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010599 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0018130 GO:0019222 GO:0019438 GO:0019827 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048507 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097659 GO:0098542 GO:0098586 GO:0098727 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling

Protein Analysis

115

Amino Acids

13.19

Weight (kDa)

6.72

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 202
AflIII ACRYGT 2 cut(s) 181, 243
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 2 cut(s) 23, 316
AluI AGCT 2 cut(s) 23, 316
AlwI GGATC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BccI CCATC 1 cut(s) 253
BceAI ACGGC 2 cut(s) 27, 119
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
Bse1I ACTGG 3 cut(s) 7, 115, 155
BseMII CTCAG 2 cut(s) 186, 294
BseNI ACTGG 3 cut(s) 7, 115, 155
BseRI GAGGAG 2 cut(s) 98, 309
BseYI CCCAGC 1 cut(s) 312
BslFI GGGAC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 295
Bsp143I GATC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 185, 295
BspPI GGATC 1 cut(s) 202
BsrI ACTGG 3 cut(s) 7, 115, 155
BssMI GATC 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 3 cut(s) 274, 280, 286
BstAPI GCANNNNNTGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 172, 303
BstKTI GATC 1 cut(s) 197
BstMBI GATC 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNSI RCATGY 2 cut(s) 185, 247
BstSFI CTRYAG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 2 cut(s) 182, 244
CviJI RGCY 5 cut(s) 23, 134, 238, 316, 334
CviKI_1 RGCY 5 cut(s) 23, 134, 238, 316, 334
DdeI CTNAG 2 cut(s) 172, 303
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
Eam1104I CTCTTC 3 cut(s) 274, 280, 286
EarI CTCTTC 3 cut(s) 274, 280, 286
Eco47I GGWCC 1 cut(s) 4
FaeI CATG 2 cut(s) 185, 247
FaiI YATR 9 cut(s) 20, 26, 71, 92, 131, 146, 150, 183, 245
FaqI GGGAC 1 cut(s) 295
FatI CATG 2 cut(s) 181, 243
FspBI CTAG 1 cut(s) 317
GsaI CCCAGC 1 cut(s) 316
Hin1II CATG 2 cut(s) 185, 247
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 2 cut(s) 104, 192
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 3 cut(s) 28, 221, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 2 cut(s) 172, 303
Hsp92II CATG 2 cut(s) 185, 247
Kzo9I GATC 1 cut(s) 194
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 7 cut(s) 20, 89, 96, 168, 177, 252, 326
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 298, 321
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 5 cut(s) 268, 288, 291, 297, 303
MfeI CAATTG 1 cut(s) 56
MluCI AATT 3 cut(s) 56, 93, 199
MlyI GAGTC 1 cut(s) 306
MnlI CCTC 6 cut(s) 76, 181, 262, 275, 281, 287
MseI TTAA 1 cut(s) 346
MslI CAYNNNNRTG 2 cut(s) 134, 305
MunI CAATTG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 39
NdeII GATC 1 cut(s) 194
NlaIII CATG 2 cut(s) 185, 247
NmuCI GTSAC 2 cut(s) 298, 321
NspI RCATGY 2 cut(s) 185, 247
PciI ACATGT 2 cut(s) 181, 243
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PscI ACATGT 2 cut(s) 181, 243
PspFI CCCAGC 1 cut(s) 312
PspPI GGNCC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 134, 305
SaqAI TTAA 1 cut(s) 346
Sau3AI GATC 1 cut(s) 194
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 306
SetI ASST 5 cut(s) 25, 50, 173, 273, 318
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 134, 305
Sse9I AATT 3 cut(s) 56, 93, 199
SspMI CTAG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 66
TasI AATT 3 cut(s) 56, 93, 199
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 2 cut(s) 298, 321
Tsp45I GTSAC 2 cut(s) 298, 321
TspDTI ATGAA 2 cut(s) 86, 165
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 2 cut(s) 185, 247
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.