RchiOBHm_Chr6g0260061

Family of unknown function (DUF716)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001745
Physical Location & Seq
Reverse (-)
15171578 .. 15171802
225 bp
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UTR
Exon/CDS
Intron
PRQ23320

Sequence Viewer

Length: 225 bp
ATGGGCACGTTCATTGGGTACATAGTACCTGGCTTTGCCCTCACCCTTCTTGGTTTATGGCACACTGTTAACACTATCAGATCTTATTTTCTCAAAAGCCCTAGTAACTTTGGAGTAAGGTCTTGGTGCCCATTGAACTGCCCTTTTTCCAAAATTAAACACTTGGAACTCATTTTCATCTTATCTTTCTCTGTATTTGCAATTATTAAGACTTCCCTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF716

Protein Analysis

74

Amino Acids

8.34

Weight (kDa)

9.78

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 126
AfaI GTAC 2 cut(s) 20, 27
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 34
BaeGI GKGCMC 2 cut(s) 8, 131
BanI GGYRCC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 30
BfaI CTAG 1 cut(s) 102
BglII AGATCT 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 30
BseSI GKGCMC 2 cut(s) 8, 131
BshNI GGYRCC 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 8, 131
Bsp143I GATC 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 126
BssMI GATC 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 67
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstSLI GKGCMC 2 cut(s) 8, 131
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 63
Csp6I GTAC 2 cut(s) 19, 26
CviJI RGCY 2 cut(s) 33, 99
CviKI_1 RGCY 2 cut(s) 33, 99
CviQI GTAC 2 cut(s) 19, 26
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 28
FaiI YATR 2 cut(s) 23, 58
FspBI CTAG 1 cut(s) 102
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HpaI GTTAAC 1 cut(s) 70
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 8
KspAI GTTAAC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 80
LpnPI CCDG 2 cut(s) 15, 42
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 2 cut(s) 8, 131
MluCI AATT 2 cut(s) 153, 201
MnlI CCTC 1 cut(s) 50
MseI TTAA 4 cut(s) 69, 156, 207, 223
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
NdeII GATC 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 2 cut(s) 20, 27
RsaNI GTAC 2 cut(s) 19, 26
SaqAI TTAA 4 cut(s) 69, 156, 207, 223
Sau3AI GATC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 2 cut(s) 8, 131
SetI ASST 3 cut(s) 11, 31, 122
SgeI CNNG 7 cut(s) 19, 41, 42, 62, 114, 135, 175
Sse9I AATT 2 cut(s) 153, 201
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 11
TasI AATT 2 cut(s) 153, 201
Tru1I TTAA 4 cut(s) 69, 156, 207, 223
Tru9I TTAA 4 cut(s) 69, 156, 207, 223
TscAI CASTG 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 166
TspRI CASTG 1 cut(s) 70
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.